>input_sequence_84428
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----------ATGGCATCCCTGAAGGCCGTGAAGCCAACCGGACTTGACGGGAAGGCCAAGGAGCCTACCAAGGTTAGTG
CCACCAAGGGACCTGCAAAGCTCAGTGCCACGGCGACCAAGCCAGCAGCCGCCAAGGGTGGCATCAAGAAGGCTGAGTCA
AAGCCACGGGAGCCTAAGAAGAGGGTACAACCTGCAGCTGATGTTATATTGAGATCC-TATAACCTTCACCTTGCATGCT
CTTTCCCTGATGA--TCTGGTGTTTTTTCAAATGACAGCAGGTGAAGAGCACCAAGCCAGCAGCAGCAAAAAACTGA---
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----
>chr3D_1_TraesCS3D01G222300
TGCGCTCGCGAGCCTCGTGATGGTGTGTGACTGCAAACCGATGGTACATGATATACAAAGACGGAACTAAAGGAGCTTAT
TTGACAGTGATTAGAGATTTTTCACTTTATAGGTCCAACTTTAGTAGTTGCAGTTTTATTTTTAAAAGTAGAACATCGAA
TGTTGATGCGCATAATCTAGCCAAACACTCCCTTTTG----------------------------CTTGATCAGGTTCAT
CACTTGTGGCTCATTTCTCCGCATGACCCAGTACGCATCCCTCTTAATGCTCAAATGAATCAATCAAGTGTTGGCGCCCC
T---CAACAACAACAAAAAACAGTCCCTCAACAGAAAGAAGTACG-----------------------------------
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-----------------------------------------------------AAACAGAGTACAAGGAGGCACTCACTA
ATACAATCTCCTAAAAAACTACTCCCACGATCTCATAACATAAGACGTTTTTTAGTGTCAAAAAAGTCTTACATTATGGG
ACGGAAAGAGTACGAAACAGAGCACAAACCACCCTTCTCAAG--------------------------------------
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----------------------------------------------GACACATGCAACTAAATTATTACAAATCCCATAG
AACCAGC----AAAAAACAAAAAAGACATCATAGCAACTTGCCAAACGCAACACAAGCTATA-CCGAGTCCCCTACGTCG
GAGGGG--GAGATCATCCAGACACCAACAGAAACCAGGCAGCAAACCTTCTTGTACAAGATTTATTCTTTCGGAAGCTTC
CTGGTGCCATTATGCGTTAATGACTCAGGGAATAATATACCTCAAACATTTCGAATGGAAAACTTCACGTCCGGTGAGTT
GCACCTCCTACCAGGCTACAAGGCATCCAATTCTGTAAGAAAGCATCCAACTGCACCGTGCCATCAATCACTTGCTACAA
TAATTCAGGACGCCTTTATTCTTGCTTCATGTAGGATTTGTACTCTGCACACTTGGGAGACCCAAGAAGCGGCCTATAAA
TACCTTGGTCCATCCATTCCCCAGTTCATCAAGCACACGACAGCTTAAGTTTCTAAGCCTTCCAGTGCCGGAACAGAGCA
GCATATAAGAATGGCATCCCTGAAGGCCGTGAAGCCAACCGGACTTGACGGGAAGGCCAAGGAGCCTACCAAGGTTAGTG
CCACCAAGGGACCTGCAAAGCTCAGTGCCACGGCGACCAAGCCAGCAGCCGCCAAGGGTGGCATCAAGAAGGCTGAGTCA
AAGCCACGGGAGCCTAAGAAGAGGGTACAACCTGCAGCTGATGTTATATTGAGATCC-TATAACCTTCACCTTGCATGCT
CTTTCCCTGATGA--TCTGGTGTTTTTTCAAATGACAGCAGGTGAAGAGCACCAAGCCAGCAGCAGCAAAAAACTGACAA
CGGCAGCAGGAGAAATGGAGCTTGCGTAGCTATCTCCATGGTGCTATGACTTATATATGAATCCCACCTTTCCCTTCCTC
TGTCTCCCATGATGTCGATCACGCCTAGACAGGGTGTACTCA--------CAATCCATGTGA-GAATATTACAAATAAGA
CGTGTAGTTCTGCCATCTGCTTCATCTTATCCTGCTTGATGTTTCACTGCACTCTCCCATTTTACGTGCGTTTGTTCGGG
TTCGGTTGGCAAATACAATAACATGAACACCAGTCGCACGAGATCCTAAGAAGTAACATCTCCGCCGTGTCATCTG----
AAAAAAAAGTGAAACCCATTATGCTAACAATAATAAGAGTACATAACAAACGATTATCATGATCCTACACAACCGT----
-----------------------------AACTGTTACAAAGTCACAAAACCAATCACCGTAAACGATGATGATATCTCA
AAAAGGAACACTACATGAATGACCAGCCACACTCACCCAAAAATTAGAAGAACACACACTTGGTAAGTTATAAAAAGAAA
AGTCAAAGGTTGGCACTTCCGCAATTACCCTGATGCATTTAGAAACAACAAGAAAACTTCCTAGACCAACTTCTATATTA
CCTATACAGTGACTTCCTAGTTTTGTGTTCGACACAAATTAGAACATTGCAGTCTGCAGAACACATTATTACAAGCCTTT
GTGAGTGATATAAGGTACACCTCATCTACAACTTCGAAAACA-AAGGGGGAAATGAACGCATAGTTTCGACTCATGTAGG
TTCTTCCACCTGAAATGGATAGCAGGTAAAGAAATGTACAGGTCGACACGCCAGGTAGCGGTGAACCAAAAGCTCACATA
GCTCACGAGCTTAATGAACGCTCGGTTACTTGGCTCTTAAGCTTGCAGCTCGCTTCTTAATGAAGAGAGCCAATCACTTA
TTTCAGCTTGTTAAACTTAACGATGTTAATGAGCGAGCTAACGAGTTTCACAAGCAGCTCGTTAAGCTTGCTAATACAAC
ACAA
>chr3A_10
---------GAGCCTCGTGGTGGTGTGTGACAGCAAACCGAAGGTACATGATATAC-AAGACAGAACTAAATGAGCTTAT
TTGACAGTGATTAGAGAGATTTCACTTTATAGGTGCAACTTTAGTAGTTGCAGTTTTATTTTTAGAAGTAGAACATCGAA
TGTTGATGCGCATAATCTAGCCAAACATTCCCTTTTGCTTGATCAGGGCCAAACATTCCCTTTTGCTTGATCAGGGTCAT
CACTTGTGGCTCATTTCTCCGCATG------TACGCATCCCTCTTAATGTTCAAATGAATCAATCAAGTGTTGGCACCTC
TCAACAACAACAACAAAAAACAGTCCCTCAACAGAAACAAGTAC------------------------------------
------------------TCCCTCCGTTCGGAATTACTTGTCTCAGAAATGGATGCATCTAGAACTAAAATACGTCTAGA
TACATC---------CATTTCTGCGACAAGTAATTCCGAACGGAGGGAGTACAAAACAGAGTACAAGGAGGCACTCACTA
ATACAATCTCCTAAAAAACTACTCCCACTATCCCATAACATAAGACGTCTTTTAGTGTTAAAAAAGTCTTGCATTATGGG
ACGGAGGGAGTACGAAACAGAGTACAAGCCATCCTTCTCAAG--------------------------------------
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----------------------------------------------GACACATGCAACTAAACTATTACAAATCCCATAG
AATCAGC----AAAAAACAAAAAAGACGTCATGGCAATTTGCCAAACGCAACACAAGCTATAGCCGAGTCCCCTACGTCG
GAGGGG--GAGATCATCCAGACACCAACAGAAACCAGGCAGCAAACCTTCTTGTACAAGATTTTATCTTTCGGAAGCTTC
CTGGTGCCATTGTGCGTTAATGACTCAGGGAATAATATACCTCAAACATTTCGAATGGAAAACTTCACGTCCGGTAAGTT
GCACCTCCTACCAGGCTACAAGGCATCCAATTCTGTAAGAAAGCATCCAACTGCACCGTGCCATCAATCACTTGCTACAA
TAATTCAGGACGCCTTTATTCTTGCTTCATGTAGGATTTGTACTCTGCACACTTGGGAGACCCAAGAAGCGGCCTATAAA
TACCTTGGTCCATCCATTCCCCAGTTCATCAAGCACACGACAG-------TTCTAAGCCTTCCAGTGCCGGAACAGAGCA
GCATATAAGAATGGCATCCCTGAAGGCCGTGAAGCCAACCGGACTTGAAGGGCAGGCCAAGGAGCCTACCAAGGTTAGTG
CCGCCAAGGGGCCTGCGAAGCTCAGTGCCACGGCGACCAAGCCAGCAGCCGCCAAGGGTGGCATCAAGAAGGCCGAGTCA
AAGCCACGGGAGCCTAAGAAGAGGGTACAACCTGCAGCTGATGTCATATTGAGATCCTTATAACCTTCACCTTGCATGCT
CTTTCCCTGATGA--TGGTG---TTTTTCAAATGACAGCAGGTGAAGAGCTCCAAGCCAGCAGCAGCAAAAAACTGACAA
CGGCAGCAGAAGAAATGGAGCTTGCAT-GCTATCTTCATGGTGCTATGAATTATATATGAATCCCGCCTTTCCCTTCCTC
TGTCTCCCATGATGTCGATCATGCCTCGACAGGCGCTGACAGTGTGTGCGCAATCCATGTGACGAATATTACAAATAAGA
CGTGTAGTTCTGCCATCTGCTTCATCTTATCCTGCTTGATGTTTCACTGCTTTCTCCCATTTTACGTGTGTTTGTTTGGC
TTTGATTGGCAAATACAATAACACAAACACCAATCACCCGAGACCCTAAGAATCATCATCTCTGTGGTGTCGTCTG-AAA
AAAAAGAAGCAAAACCCATTATGCCAACGATAATAGGAGTACATGACAAACGATTATCATGATCCTACACAACCGCAATC
ATCAAACAAACAGAAATTTCAGGACACAGAACTGTTACAAAATCACACAACCAATCACCATAAACGCTGATGATGTCTCA
AAAAGTAACACTACGTGAATGACCAGCCACACTTACCCAAAAATTAGAAGAACACACACTTGGTAA-TTATGAACAGAAA
AGTCAAAGGTGGGCACTTCTGAAATTATCCTGGCGCATTTAGAAACAACAAAAAAACTTCCTCAATCAACTTTTATATTA
CCTATACAGTGACTTCCTAGTTTT-TGTTCGATACAAATTAGAACATTGCAG-------AACCCATGATTACAAGCCCTT
GTGAGTGATATAAAGTACACCTCATCTACAAGTTCAAAAACAGAAGGGGTAAAAGAAGGCGTTGTTTCGACTCATGTAGG
TTCCTCCTTAAAC---GGATAGCAGGTAAAGAAGTGTACAGGCCAACATGCCAGG-------------------------
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----
>chr3B_10
---------GAGCCTCATGGTGGTGTGTGACTGCAAACCGATGGTACATGATATAC-AAGACAGAACTAAAGGAGCTTAT
TTGACAGTGATTAGAGAGATTTCACTTTATAGGTCCAACTTTAGTAGT-GCAGTTTTACTTTTGAAAGTAGAACATCGAA
TG-TGATGCACATAATCTAGCCAAACACTCCCTTTTG----------------------------CTTGATCAGGGTCAT
CACTTGTCGCTCATTTCTCCGCATGCCCAA-TACGCATCCCTCTTAATGTTCAAATGAATCAATGAAGTGCTGGCACCCT
TAA--------AAAAGAAAATAGTCCCTCAACAAAAAGAAGTACGAAACAAAGGCACTTACTGATACAATATCCCAAAAA
CTACTCCCTCCGTCCTACTCCCTCCGTCCGAAAATATTTGTCAAAAGAATGAATGTATCTAGACGTATTTTAGTTTTAGA
TACATCCATTTTATGCATTTCTACGACAAGTATTTCCGAACGGAGGGAGTGAGTATAATTTAAG----------------
----------------------------------------------------------------------ACGTAATGGG
ACGGAGGGAGTATGAAACAGAGTACTCTCTCCATTCCTAAATATTTGTCTTTCTAGAGATTTCAACAAATGGCTACATAC
AAAACAAAATAAAACAAAATAAGTGAATCTACACTTTAAAATATGTCTATATTCATAGGTATGTGGTAGTCTATTTGAAA
TCTCTAAAAAAACAAATATTTAGGAACTACTCCGTCTAATATTTAGTAACTACTCCCTCCGTCCTATAATTTAGGACGTA
ATGGGACGGAGGGAGTTTGAAACAAAGTACTGTACAAGACACCCTTGACACATGCAACTTAATTATTATAAATCCCATAG
GATCAACGAAAAAAAAACAAAAAAGACGTCATGGCAACTTGCCAAACGCAACACAAGCTATAGCCGTGTCCCCTACGTCG
GAGGGGGAGAGATCATCCAGACACCAACAGAAACCAGGCAGCAAACC---------------------TTCGGAAGCTTC
CTGGTGCCATTGTGCGTTAATGACTCAGGGAATAATATACCTCAAACATTTCGAATGGAAAACTTCGCGTCCGGTAAGTT
GCACCTCCTGCCAGGCTACAAGGCATCCAATTCTGTAAGAA-GCATCCAACTGCACCGTGCCATCAATCACTTGCTACAA
TAATTCAGGAAGCCTTTATTCTTGCTTCATGTAGGATTTGTACTCTGCACACTTGGGAGACCCAAGAAGCGGCCTATAAA
TACCTTGGTCCATCCATTCCCCAGTTCATCAAGCACACGACAGCTTAAGCTTCTGAGCCTTCCAGTGCCGGAACAGAGCA
GCATATAAGAATGGCATCCCTGAAGGCCGTGAAGCCAACCGGACTTGAAGGGCAGGCCAAGGAGCCTACCAAGGTTAGTG
CCACCAAGGGGCCTGCAAAGCTCAGTGCCACGGCGACCAAGCCAGCAGCCGCCAAGGGCGGCATCAAGAAGGCTGAGTCA
AAGCCACGGGAGCCTAAGAAGAGGGTACAACCTGCAGCTGATGTCGTATTGAGATCCTTATAACCTTCACCTTGCATGCT
CTTTCCCTGATGATCTGGTG---TTTTTCAAATGACAGCAGGTGAAGAGCTCCAAGCCAGCAGCAGCAAAAAACTGACAA
CGGCAGCAGAAGAAATGGAGCTTGCAT-GCTATCTTCATGGTGCTATGAATTATATATGAATCCCGCCTTTCCCTTCCTC
TGTCTCCCATGATGTCGATCATGCCTCGACAGGCGCTGACAGTGTGTGTGCAATCCATGGGACGAATATTACAAATAAGA
CGTGTAGTTCTGCCATCTGCTTCATCTTATCTTGCTTGATGTTTCACTGCTTTCCCCCATTTTACGTGTGTTTGTTTGGG
TTCGATTGGCAAATACAGTAACACAAACGCCAATCG-CCGAGACCCTAAGAATCATCATCTCCGCGGTGTCGTCTGTAAA
AAAAAAAAGCAAAACCCATTATGCCAACAATAATAGGAGTACATGACAAACGATTATCATGATCCTACACAACCGCAA--
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----
>SNPs
SSSSSSSSS----------S------------------------------------S-----S-----------------
-----------------SS-------------------------------------------------------------
---------------------------------------------------------------------------S----
-------------------------S--S-S------------------S-------------------------S----
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----------------------------S---S---------------S---------S---------------------
-----SS---------------S----S----------------------------------------------------
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--S------------------------S----S-----------------------------------------------
---------------------------------------------------------------SS---------------
-----------S---------------------------------------------------------------S----
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-------------------------------------------------S------------------------------
------------------------------------------------S---S---------------------------
----------S---------------------------------------------------------------------
--------------------------------------------S-----------------------------------
----------------SSS-SSS---------------------------S-----------------------------
---------S---------------S-S-------S-------------S---------------S--------------
---------------------S----S------SSS-SSSSS--------------------------------------
--------------------------------------------------SS----------------S-------S---
----S------------------SS-------S----S-----S--------SS-S---------S-----S--------
---------SS-------------S----------S--------S------------------------------S----
-----------------------------------------S-----S-----------S------S-------S-----
-----S--------S------------------S--------------------------------S----S--S-----
----------S--------S-S-----S----SS-----------------S----------SS-S------S-------
------------------------S-------S-------------------SSSSSSS---S---S----------S--
-------------S-----------------S---S-------------S---S---S--S-S-----------------
---S---SSSSSSSSS-----------------S--------S-S---S------SSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSS
>forward_266
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------TGGCTCATTTCTCCGCATGA------------------------------------------------------
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----
>reverse_2053
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----------------------------------------------------GTAACATCTCCGCCGTGTCA--------
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----
