>input_sequence_84424
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-----------------------------------------------------------ATGGCGAGAACCCTTTTTGGT
TTCGTCGCCGCCCCCGCGCTCCTCCTCGCCGTCTTCATGCCGGCCCTCGCCGCCGCGCAGGCCCCCGCGCCGGCGCCCAC
CAGCGACGGTGAGCCATCAAACTCCAGCATCTTCCCC-TTCTGAATTGCTTTTCCCTTCTGGATTTCCTCACACTTGTTT
CTCGTCGATGCGTGCAGCGTCCTCGGTCGACCAGGGCGTTGCCTACTTTCTGATGATCCTGGCGCTGGTGCTCACCTACC
TCATCCACCCGTTGGACGCCTCCTCCCCGTACAAGCTCTTCTGA------------------------------------
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>chr1A_1_TraesCS1A01G113100
TCAAAGGATTTCGCATGCTTTCCATGGAATGACAGAATTCCCCTTGCTTAGTTTTCGCTCCGCTCGTGCGTGGCACTCCT
TACTTGCGGAGCGGCATATCGGAAAAAGAAGGATTGACTTTCTATACGGGCCTGTCCCCTCTTACCCCTAATTAACAATT
ATGCTGCAACCAAGTGGGCAGTGGTAAGCAAAGTAAGCAGAGGGTTCTCGCTCCGGTTGTGCGAAGGTTCCATGCCTGTT
TTTACTGATTTTGGTAACCTTCTACAAGATTTTTAAACCAGTTTTCTCTTCGTTGTTGCTTTTTTTTACCCTTTTTCCCG
GTCTTTCAATTTTTGTTTCTTTTTCTATTTTTCATAAATTCACAAATTTCAAGAAATGTTCAAACTCTTTAAAATCTGTT
CAGAATTTTAAAAATTCTTTGCTTTAAAAAAAACTTTCAGAATTACAAAAAATGTTTGGAATT---TACAAATTTTGTCA
CAAGGAGC-GTCTTACAGGACCTGCCATCTACCACCGTGTAGGCAACTAAACACGCCCCGGTGATTTGATTTTCGTAA--
----TTTTGTATTCGCCGGCTGCAAGTACTTGCTAGCAATATAATGCGCATTAATCAAAACCTGAATTCTATTCGCATGT
AGTGAATCTGATTCGGCGTCACGTCCAACCAAACCAGTAAACAAACGGGAATGTTTCTGCGGCCAGATGATTGCGCAGCA
CAACCAAACGCATAGACAGCCAACCTCAATCCAGGATCCAGACTGTAAAGACGGAAAAGAAATTCAGCAACGGTCGCCCA
TGTGAGCGGGCCCCGGCGCTGGCGCAAGACGCCATCGCGATCCCAGCGAGGTCCAGCGAATTCCAGGAGAGGGAA-----
AGAGAGCCGTTATATAATCAATCAATTATCAGGGGAGGTT----ATATAATGGCACAAGAAGCGGCAGAACGTGAGGACA
AGGCAAGGAGTCAAGGAGAGAGATAGAGGCATCTTCTATTCACAAGATACGCGGCTGCCATGGCGAGAACCCTTTTTGGT
TTCGTCGCCGCCCCCGCGCTCCTCCTCGCCGTCTTCATGCCGGCCCTCGCCGCCGCGCAGGCCCCCGCGCCGGCGCCCAC
CAGCGACGGTGAGCCATCAAACTCCAGCATCTTCCCC-TTCTGAATTGCTTTTCCCTTCTGGATTTCCTCACACTTGTTT
CTCGTCGATGCGTGCAGCGTCCTCGGTCGACCAGGGCGTTGCCTACTTTCTGATGATCCTGGCGCTGGTGCTCACCTACC
TCATCCACCCGTTGGACGCCTCCTCCCCGTACAAGCTCTTCTGAGCCTGTACATGCGCAGAGGCTTCTCATTCTTTTGTT
CATCTTTCTGTTGTCCGTCGATCGATAAGCTAGTGGATTCTTGAGAGATTGGTTGTGTGAGATTCGATTTGAATTCATTA
ATTTGTTGCTCCTGTACTCTGGTGGATTCGCACGCACGCGTGCATATTTTTGTTCCAATGCTCCTCAGGTCTGTTGCCAC
TAATTATGCGTACTAGTCATCAGCCCGTGTGG--------GCTAGCAATTCAT-----GCATGCATAGTACTCTCTTTAA
TCCAAAATAAATGTCGTGGTTTTAGTTCAAAAATGAACTGTCGTGGCACGACACTTATCTTAGATCGGAGAGAGTACTAT
AT--ATATGTAATTTCATAAAAGAATGAAAATATAGGTAGAAACCTTG------------------AAGAATATTTTTTA
AGTGGTTTACATTAGAATATGTAGTACTTAGTTATTCTGGTTATCCATGGGCCAAAAAAAGGGAACTCCATTC-TTTCTA
TTGGGTTCTAATTAGGGGGTGTTAAGTGAATTGGAAGAATGACGATGTAGGACATATGAACGATAGTTGGCTCTTGACAA
CTCTAGAATACGAAAAATATGCCCCGTAAAACATTCA----TTTTCGAATGAGTCAATGTAGAAAAAGTTTTTCTTTTGG
AACAAAATTAGCACCTTATGTTGAAGAGCCATGCTGGACATGAACGGTAGAAATGCAAACTTTAAAAGTGGTTTTCAATT
TCTGTGTAAATAAATGAGTTTTTTTTAGAGAATGTAAATAGATGAGTTAGTGCAGTTAAAACTTTTCAAACTTTGACAGT
ACTAGTTGATAAAAAAATCTTTATATTGGCAAGATGATAGTAGTACTAATAAATTGCATTAACATGCGCCTTCGCTAATT
CTGTCGACGAACCATGCTGGACACTAATGGTAAATATTAAAAACTCATGTGTCAATGTGAATTGAAAATGGTGATGTTGA
ATTTGCACGCTTGGTACAATCAAATACTATATACATCTACCA
>chr1D_163
GCTAGC--------------------------------------------------------------------------
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-------AACCAAGTGGGCAGCGGCAAGCAAAGTAAGCAGAGGGTTCTCGTTCCGGTTGTGCGAAGGTTCCATGCCGTTT
TTTCGTAATTTTGGAAACCG--TAGAAGATTTTTAAACCGGTTTTCTCTTTGTTGTTGCTTTCTTTACCC---TTTCCTG
GTCTTTTATTTTTTGTTTCTTTTCCTAT-TTTCATAAATTCACAAATTTCAAAAAATGTTCAAACTCTTCAAAAACTGTT
CAGAATTTTTAAAAATGTTTGCTTTTAAAAAAACTTTCAGAATTTCAAAAAACGTTTAGAATTTAGTACAAATTTTGTCA
CAAGGAGC-GTCTTGCAGGACCTGCCATCTACCACCGTGTTGGCAACTAAACACGCCCTAGTGATTTGATTTTCCTAT--
----TTTTGTATTCCCAGGCTGCAAGTACTTGCTAGCAATATAATGCGCATTAATAAAAACTTGAATTCTATTCGCATGT
AGTGAATCTGATTCGGCGTCCCGTCCAACCAAACCAGTAAACAAACGGGAATGTTTCTGCGGCCAGATGATTGCGCAGCA
CAACCGAACGCATAGACAGCCAATCTCAATCCAGGATCCAGACTGTAAAGACGGAAAAGAAATTCGGCAACGGTCGCCCA
TGTGAGCGGGCCCCGGCGCTGGCGCAAGACGCCATCGCGATCCCAGCGAGGTCCAGCGAATTCCAGGAGAGGCAAAGAGG
AGAGAGCCGTTATATAATCAATCAATTATCAAGGGAGGTTGGTTATATAATGGCACAAGAGGCGGCAGAACGTGAGGACA
AGGCAAAGAGTCAAGGAGAGAGATAGAGGCATCTATTC-TCACAAGATACGCGGCTGCCATGGCGAGAACCCTCTTTGGT
TTCGTCGTCGCCGCAGCGCTCGTCCTCGCCGTCTTCATGCCGGCCCTCGCCGCCGCGCAGGCCCCCGCGCCGGCGCCCAC
CAGCGACGGTGAGTCATCAAACTCTAGCATCTT-CCC-TTCTGAATTGTTTTTCCCTTCTGAATTTCCTCTCACTTGTTT
CCTGTCGATGCGTGCAGCATCCTCGGTCGACCAAGGCGTTGCCTATTTTCTGATGATCCTGGCGCTGGTGCTCACCTACC
TCATCCACCCGTTGGACGCCTCCTCCCCGTACAAGCTCTTCTGAGCCTGTATATGCGCAGAGGCTTCTCATTCTTTTGTT
CTTCTTTCTGTTGTTCGTTGGTCGATAAGCTAGTGGATTCTTGAGAGATTGGTTGTGTGAGATTCGATTTGGATTCATTA
ATTTGTTGCTCTTGTACTCTGGTGGATTCGCACGCACGCGTGCATATTTTTGTTCCAATGCTTCTCAGGTCTGTTGCCAC
TAATTATGCGTACTAGTCATCAGCCCGCATGGCGGCATGGGCTAGCAATTCATCAAGTGCATGAATAGTACCCCCTCCAA
TCTAAAATAAGTGTCGTGC--------------------------------------------------GGGAGTACTAT
AT--ATATGTAATTTCATAAAAGAATGAAAATATAGGTAGAAACTTTGAAGAATGTTAAAACTTTGAAGAATATTTTTTA
AATGGTTTACATTAGAATATGTAGTACTTA----TTCTGGTTATTCATGGGGCAAAAAA-GGGAATTACATTC-TTCCTA
TT-GGTTCTAATTAGGGGGTATTAAGTGAATTGGAGGAATGACGATGTAGGACATATGAACGATACTTGGCTCTTGGCGA
CTCTA-AATACGAAAAATATGCCCTGTAAATCATTTTTCATTTTTCGAATGGGTCAATGTAGAAAAAGTTTTCCTTTTGG
AACAAAATTAGCACCTTATGTTGAAGAACCATGCTGGACATGAACGGTAGAAATGCAAACTTTAAAAGTGGTTT------
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>chr1B_360
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---------------------------------------TCAAAAATTTCAAAAAAAATTCAAACTCTTCAAAAACTGTT
TAGAATTTAAAAAAAAATTTGCTTTATTTTT---TTTCAGAATTTCAAAAGATGTTTGGAATT---TACAAATTTTGTCG
CAAGGAGGGGTCGTATTGGACCTGTCATCTACCAC----TAGACAACTAAACACGCCCGAGTGATTTGATTTTCGTACTA
CTACTTTTGTATTCCCCGGCTGCAAGTACTTGCTAGCAATATAATGTGCATTAATAAAAACTTGAATTTTATTCGCATGT
AGTGAATCTGATTCGGCGTCTCGTCCAACCAAACTAGTAAACAAACGGGAATGTTTCTGCGGCCAGATGATTGCGCAGCA
CAAACGAACGCATAGACAGCCAATCTCAATCCAGGATCCAGACTGTAAAGACGGAAAAGAAATTCAGCAACGGTCGCCCA
TGTGAGCGGGCCCCGGCGCTGGCGCAAGACGCCATCGCGATCCCAGCGAGGTCCAGCGAATTCCAGGAGAGGCAAAGAGG
AGAGAGCCGTTATATAATCAATCAATTATCAAGGGAGGTT----ATATAGTGGCACAAGAGGCGGCAGGACGTGAGGACA
AGGCAAAGAGTCAAGGAGAGAGATAGAGGCATCTATTC-TCACAAGATACGCGGCTGCCATGGCGAGAACCCTCTTTGGT
TTCGTAGTCGCCGCCGCGCTCGTCCTCGCCGTCTTCATGCCAGCCTTCGCCGCCGCGCAGGCCCCCGCGCCGGCGCCCAC
CAGCGACGGTGAGCTATCAAACTCCAGCATCGT-CCCCTTATGAATTGTTTTTTCCTTCTGAATTTCCTCTCACTTGTTT
CTCGTCGATGCGTGCAGCATCCTCGGTCGACCAAGGCGTTGCCTACTTTCTGATGATCCTGGCGCTGGTGCTCACCTACC
TCATCCACCCGTTGGACGCCTCCTCCCCGTACAAGCTTTTCTGAGCCTGTATATGCGCAGAGGCTTCTCATTCTTTTGTT
CTTCTTTCTGTTGTTCGTTGATCGATAAGCTAGTGGATTCTTGAGAGATTGGTTATGTGAGATTCGATTTGAATTCATTA
ATTTGTTGCTCTTGTACTCTGGTGGATTCGCACGCATGCGTGCATATTTTTGTTCCAATGCTTCTCAGGTCTGTTGCCAG
TAATTATGCGTACTAGTCATCAGCCCGCATGG--------GCTAGCAATTCATCAAGTGCATGAATAGTACTCCCTCCAA
TTCAAAATAAGTGTCGTGGTTTTAGTTCAAAAATGAACTGTCGTGGCACGACACTTATTTTGGATCAGGGGGAGTACTAT
ATATATATGTAATTTCATAAAAGAATGAAAATATAGGTAGAAACTTTG------------------AAGAATATTTTTAA
AATGGTTTACATTAGAATATGTAGTACTTA----TTCTGGTTATCCATGGGCCAGAAAA-GGAAATTACATTTTTTTCTA
TTGGGTTCTAATTAGGGGGTATTAAGTGAATTGGAAGAATGACGATGTGGGACATGTGAACGATACTTGGCTCTTGGCGA
CTCTA-AATACGAAAAATATGCCCTGTAAAAGATTTTTCATTTTTAGAATGGGTCAATGCAGAAAAAGTTTTCCTTTTGG
AACAAAATTAGCACCTTATGTTGAAGAACCATGCTGGACATGAACGGTAGAAATGCAAACTTTGAAAGTGGTTT------
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>SNPs
S-S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSS--------------S--S-------------------------S-------------------------SS--
---SS-S-------S----SSS--S--------------S----------S-----------S---SS--SSS-----S-
------S-S--------------S----S-----------------------S----------------S----S-----
--------------S-S---------------------------S-----------------------------------
----------------------------------------------------------SS-----------------S--
--------------S----------------------------------------S-----S------------------
--------------------S-----------------------------------------------------------
-----S-----------------S--------------------------------------------------------
------------------------------------------------------------------------S-------
-------------------------------S----------------------------S-------------------
------S---------------------------SS-SS----------------------------------S------
-------S----S--------S----------------------------------------------------------
---------------------------------S--------------S------------S--------S---------
------------------S--------------S----------------------------------------------
---------------------------------------------------S----------------------------
-S------------S---S-------------------------------------------------------------
-----------S--------------------------------------------------S-----------------
---------------------------SS----------------------------------S---------S--SS--
----------S-----------------------------------------------S--S----S-S-S---------
--------------------------------------------S-----------------------------------
-S----------------------------SSSS-------------------------S-----S-S------------
--------------------S--------------------------------------------S----------S-S-
-----S------------------S----------SS--------------S--------------------S-------
---------------------------S----------------------------------------------SSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_67
-----------------------------------------------TTAGTTTTCGCTCCGCTCGT-------------
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>reverse_1332
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---------------------------------------------------CATGCGCAGAGGCTTCTCAT---------
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