>input_sequence_84412
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--ATGGGCCACGCCCCCAGGAGGTTGGTCTCTGCCCTCTATGTAAAGCCACCATGGGTGCCCGTTGAAGTGAGAATCGGT
CAGAAGTGGAGACGAGCAAATGTTTTAAGGCAAGCTGATCGCAGGGGACTCTGTCTTGTGAGCATCAGAGGGCCGGCGCC
CGAGTCTGACCCTATAATGGTGCCGCTATCAACGATCCGGATACCTTCCGACCCTCCTGTTGCCAGGAAAAGACCAGACA
CTCGTCCTAATTTCCGAGTGAAGAAGCCCAGGGACACCGGTGATGCCACCGAAGGCAGTAGCGATTAG------------
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>chr7B_1_TraesCS7B01G333000
CATTTTCTGCTTCTTTTGAACACTCGCTTCTCAGTAGCATTAGGTAAGCGGTAGTGGTATGAGCAATCAGGCACCCATTC
TCAGTAGCAATAACGTAAGCTCTAATAAAACTTGTTCTGCGCGGGAAAGACAGTCCCGCGG----TTTAGAAGGCAAGAA
ACCCCCAAGAATGCGGCACGTGCCCGCTCATCCTCACGTGGGGAGCGGACGCTGCGCGTGCCAGTGAGT----TTTTTTT
TATGCGAGACCCAGGCCTTGAACCTGGGTCGACCGCCCCACTAC---AGGTGGCGTTACCACCGCGCTATCATCATGTTT
TTTGATGTAAGCGCTAATGGTAGAAGCTATCGAGTAACCCGTTGTCCAAGTTACCAAGTCACAAATACTCCAACTGCAAT
CGCACTGTGCGAAAATCCTATGGGAAAATAACTCTGACCAAATATGCTAATGCAATATACTCCATT--------------
----------------AATGTAATGCTGAATTTCTACCATTCTTTATGATGTAGGACAACAAAGTTAGAAAATATACATT
AGCCAATTTATTATATCGGGGATTAACTGTGATGAATTTCCATTGAGCCAGGCACTATTAGAGCTGCCTATTGCTTTTCT
GAAGCTATCTCAGTTTTTTTTCTAAACAGAGGCAAAAGATTTGCCTCATGGATTAATTAAGGAGAAGCTATCTCAGATTT
CAGGGATTAACTATGATAAATTTCCATTATGCAGGCACTACTAGAGCTGCCTATTTCTTTTCTGAAGCTATCTCAGATTT
C-GGGTTCTGCAAGGTTTAACGTTTGTTTGACTGATCTCCTTGGCTCCTTGCTTGTAACTCTGATAGGTTAGATGTCAGT
ATTGCCCTCGTGGATGTGGCGTCGTTTCTCCTCCTTCATAAACACGATATGACTAATTTGTTGTGTTCCTATTTTTCAAG
GGATGCATTTGTTGTGTTCCTATTGAAAGTGAATTAATTCTCTCTGGATTCACATTTTTCAGGTAGGAAAGCGAGTCCTG
AAATGGGCCACGCCCCCAGGAGGTTGGTCTCTGCCCTCTATGTAAAGCCACCATGGGTGCCCGTTGAAGTGAGAATCGGT
CAGAAGTGGAGACGAGCAAATGTTTTAAGGCAAGCTGATCGCAGGGGACTCTGTCTTGTGAGCATCAGAGGGCCGGCGCC
CGAGTCTGACCCTATAATGGTGCCGCTATCAACGATCCGGATACCTTCCGACCCTCCTGTTGCCAGGAAAAGACCAGACA
CTCGTCCTAATTTCCGAGTGAAGAAGCCCAGGGACACCGGTGATGCCACCGAAGGCAGTAGCGATTAGGCTGCTGGC---
-TGTTTAAGTGTTCATTGACTGTGTGATAACTTATGCTTGATCTGTA--TGTAAGTTGGAAAAGAAGTCTTTTTCTCCTT
C---ATGGACAGATGCTGTGGTGTGTGATTCTGTATGAAACAAATT-GTCTGAACGTAT-TACTGCAGTTCAGACTTGTT
TTATTGTCAGTAAAATCAGGGGTTCAAGGC-ATCATGGTGCTAATGATTTCTTTTTGACACACCACGAAATGACC-----
----------------------------------------------------------ACCAAAAGTATCAGGTTCACTT
GAGCACCAAAGGGATGGAAGACATACATTTGCTGACAGCAGAATATAGCCATACCAACAGTGACCAAACCGAGGCTGATG
CTGCGTTAGGCATTCGTCATACGG--TATAGTGGTCACGACCAACTGTCAAAAACTTATATGGGGGTAGTATTTGTTCTG
AACCACAGTTAAAGAAA-ACAGCTGATACACAGTCTGCAACACGGATGCTCGCAGTTCCCAGCTTACGGCGCAAGCACAG
ATTCAGAAAAA-TCTACAATTCGAAAGTTGTGAGGCTGTAAAAAATATATACAATTCGAAAGTTGTGAAGCTGTAAAAAA
TATAAACAAACGAGGATAAACAAATACATACTCCTTCGGTT-----------------------------CCAAAACATT
TGTCATGGTTTTAGTTCAAAGGAGTACATAGTAACAGGAAGAG-------AAGGGGTGCCCCAGCTTCGGTCAATTTCAA
AGACCCT------------AGACGACACAACATCGGACACCGGGGATGAGTTCACTCATAGCCCACTTGAAATTCGAAAC
TTCG-------------------------------------------AAAGCAAATTACACAGAGGCAAACTTCATCATC
ATCAATGAAAAAAGGCCACTACTACATGACTAGTACTACATGTCAAGTCCATTGGCAACATCTCCCTCCAT---------
-GCAAAGAATGCCGCAAGACAGAATATCAGGAAGCAATTGGCCGTTGTCTTCGGGCTTAATCCTATTGCGCCCCACCATT
ATCATCTGGGAATCCTGCCAGTGTGAAGAGCAATTAATTAATTAGCAA
>chr7A_1
CATTCTCTGCTTCTTTTGAACACTCGCTTCTCAGTAGCATAAGGTAAGCGGTAATGGTATGAGCTATCAGGCACCCGTTC
TCAGTAGCAATAACGTAAGCTCTAATAAAACTCGTTCTGCGCGAGAAAGACAGTCCCGCGGCATTTTTAAAAGGCAAGAA
AC-CCCAAGAACGCGGCACGTGCCCGCTCATCCTCACGTGGGGAGCGGACGCTGCGCGTGCCAGTGAGT----TTTTTTT
TATGCGAGACCCAGGCTTTGAACCTAGGTCGACCGCCCCACTAC---AGG---CATTACCACCGCGCTATCAACATGTTT
GTTGATGTAAGCGCTAATAGTAGAAGCTATCAAGTAACCCGTTGTCCAAGTTACCAAGTCACAAATACTCTAACTGCAAT
CGCAC--TGCGAAAATCCTATGGGAAAATAACTCTGACCAAATATGCTAATGCAGTATACTCCATT--------------
----------------AATGTAATGCTGAATTTCTACGATTCTTTATGTTGTAAGACAACAAAGTTAGAAAATATACATT
AGCCAATTTATTATATCGGGGATTAACTGTGATGAATTTCCATTGAGCCAGGCACTATTAGAGCTGCCTATTGCTTTTCT
GAAGCTATCTCAGTTTTT-TTCTAAACAGAGGCAAAAGATTTGCCTCATGGATTAATTACGGAGAAGTTATCTCAGATTT
CAGGGATTAACTATGATGAATTTCCATTATGCGGGCACTACTAGAGCTGCCTATTGCTTTTCTGAAGCTAACTCACATTT
CAGGATTCTGCAAGGTTTAACGTTTGTTTGACCGATCTCCTTGGCTCCTTGCTTGTAACTCTGATAGGTTAGATGTCAGT
ATTGCCCTCGTGGATGTGGCGTCGTTTCTT---CTTCATAAACACGATATGACTAATTTGTTGTGTG-------------
------------------CCTATTGAAAGTGAATTAATCAAATCTGGATTCACATTTTTTAGGTAGGAAAGCGAGTCCTG
AAATGGGCCACGCCCCGAGGAGGTTGGTCTCTGCCCTCTATGTAAAGCCACCATGGGTGCCAATTGAAGTGAGAATCGGT
CAGAAGTGGAGACGAGCAAATGTTTTAAGGCAAGCTGATCGCAGGGGACTCTGTCTTGTGAGCATCAGAGGGCCGGCGCC
CGAGTCTGACCCTATAATGGTACCGCTATCAACGATCCGGATACCTTCCGACCCACCTGTCGCCAGAAAAAGACCAGACA
CTCGCCCTAATTTCCGAGTGAAGAAGCCCAGGGACGCTGGTGACGCCGCCGAAGGCAGCAGCGAGTAGGCTGCTGGCTCA
CTGTTCAAGTGTTCATTCACTGTGTGATAGCTTATGCTTGATCTGTA--TGTAAGTTGGAAAAGAAGTCTTTTTCTTCTT
C---ATGGACAGATGCTGTGATGTGTGATTCTGTATGAAACAAATTTGTCTGAACGTACCAACTGCAGTTCAGACTTGCT
TTATTGTCAGTAAAATCAGGGGTTCAAGGC-ATCATGGTACTAATGATTTCTTTTTGACACACCACGAAATGAGCTAGTT
TCCCCTACCATCTAGACAGCGTGACAAGGATACCA--------------------------AAATTTATCAGGTTCACTT
GAGCACCAAATGGATGGAAGACATAAATTTTCTTACAGCAGAATGTAGCCATACCAACAGTGACCAAATCGAGGCTGATG
GTGCGTTAGGCATTCATCATACGGTATATAGTGGTCACGGCCAACTGTCAAAAACTTATATGGGG-TAGTATTTGTTCTG
AACTACAGTTAAAAAAA-ACAGCTGATACACAGTCTGCAACACGGATGCTCGCAGTTCCCAGCTTACGGCGCAAGCACAG
ATTCAGAAAAAATCTACAATTGGAAAGTTGTGAAGCTGTAAAAAATA--------------------------TAAAAAA
TATAAACAAACGAGGATAAAGAAATGCATACTCCTTCGGTT-----------------------------CCAAAACATT
TGTCATGTTTTTAGTTCAAAGGAGTAGATAGTAACAGGAAGAG-------AAGGGGCGCCCCAGCTTCTGTCAATTTCAA
AGACCCTGGTAGTAGTACAAGACGACACAACATCGGACACCGGGGATGAGTTCACTCACAGCCCAGTTGAAAATCGAAAC
TTCGCCACCGCAAAAAGAAAAAAGAAAAAAAGAAATTCGAAACTTCGAATGCAAATTACAGAG--GCAAACTTCATCATC
ATCAAAGAAAAAAGGCCACTACTACAAGACTAGC---ACATGGCAAGTCCATTGGCAACATCTCCCTCCATAGTGGGCCC
GGCAAAGAGTGCCGCAAGACGAAATATCAGGAAGCAATTGGCCGTTATCTTCGGGCTTAATCCTATTGCGCCCCACCATT
GTCATCTGGAAATCCTGCCAGTGTGAAGAGCAGTTAATTA--------
>chr7D_3
--TTTTCTGCTTCTTGTGAACACTCGCTTCTCAGTAGCATAAGGTAAGTGGTAATGGTATGAGCTATCAGGCACCCGTTC
TCAGTAGCA-TAACGTAAGCTCTAATAAAACTC-TTCTGCGCGGGAAAGACAGTTCGGT---ATTTTTAAAAGGCAAGAA
AC-CCCAAGAACGCGGCACGTGCC----CATCCTCACGTGGGGAGCGGACGCTGCACGTGCTAGTGAGGGGGATTTTTTT
AATGCGAGACCCAGGCTTTGAACCTGGGTCGACCGCCCCACTACAGGAGG---CGTTACCACCGCACTATCAACACGTTT
GTTGATGCACGTGCTAATGATAGGAGCTATCGAATAACCCGTTGTCCAAGTTACACCGTCACAAATACT----CTGCAAT
CGCACTGTGCGAAAATCCTATGGGAAAATAATTCTGACCAAATATGGTAATGCAATATAATTATATGGCAGACAAAGAAA
ACAACCTCAGATAAAGAATGTAATGCTGAATTTCTACCATTCTTTATGATGTAGGACAACAAAATTAGAAACTATAGATT
A----------------------------------------------------------------GCCTATTGCTTTTCT
GAAGCTATCTCAGTTTTT-TT-TAAACAGAGGCAAAAGATTTGCCTCATGGATTAATTAAGGAGAAGCTATCTCAGATTT
CTTTGATTAACTATGATGAATTTCCATTATGCAGGCACTACTAGAGCTGCCTATTGCTTTTCTGAAGCTAACTCAGATTT
CAGGGTTCTGCAAGGTTTAACGTTTGTTTGACTGATCTCCTTGGCTCCTTGCTTGTAACTCTGATAGGTTAGATGTCAGT
ATTGCCCTCGTGGATGCGGCGTCATTTCTT---CTTCATAAACATGATCTGACTAATTTGTTGTGTT-------------
------------------CCTATTGAAAGTGAATTAATTCTCTCTGGATTCACATTTTTCAGGTAGGAAAGTGAGTCCTA
AAATGGGCCACGCCCCAAGGAGGTTGGTCTCTGCCCTCTATGTAAAGCCACCATGGGTGCCCGTTGAAGTGAGAATCGGT
CAGAAGTGGAGACGAGCAAATGTTTTAAGGCAAGCTGATCGCAGGGGACTCTGTCTTGTGAGCATCAGAGGGCCGGCGCC
CGAGTCTGACCCTATAATGGTACCGCTATCAACGATCCGGATACCTTCTGACCCTCCTGTTGCTAGGAAAAGACCAGACA
CTCGCCCTAATTTCCGAGTGAAGAAGCCCA---------------CCGCCGAAGGCGGTAGCGAGTAGGCCGCTGGCTGT
TCAAGTGT---TTCATTCACTGTGTGATAGCTTATGCTTGACCTGTATGTGTAAGTTGGAAAAGAAGTCTTTTTCTTCTT
CTTCATGGACAGATGCTGTGATGTGTGATTCTGTATGAAACAAATT-GTCTGAACGT-CCTACTGCAGTTCAGACTTGTT
TTATTGTCAGAAAATCAGAGGTTCGAAGCATATCATGGTACTAATGGTTTCTTTTCTTTTTTTGAACACCTAATGGTTTC
TTTTCGATAAGCCTTGAAATTGGCAGGTTCCGCTATCATTGGATAGTTCAACAAGAGTACCAAATGTATGAGGTTCAGTT
GAGCACCAAA-----------------TTTGCTGACAGCTGAATGTAGCCATACCAGCAGTGATCAAACCGGGACCG---
---------------------------------------------------------ATATGGGG-TAGTATTTGTTCTG
AACTACAGTTAAAAACACACAGCTGATACATAGTCTGCAACACGGATGCTCGCAGTTTCCTGCTTGCGACGCAAGCACGG
ATTCAAAAAAAATCTAC-ATTCGAAAATTGTGAAGCTGTAC------------------------------------AAA
TATAAATAAACGAGGATAAACAAAATACTAACTTCATCAAATATAAGACATTTTTGTAGGCTAGTTTAGCCTAAAAAATG
TCTTATATTTTGAGACGTAGGTAGTACTACGTAAATTGGAACGGGAATGAAAGGGGTGCCCCAGTTTTTGTCAATTTCAA
AG--CCTAGTAGTAGTACAAGACGACACAACATCAGACGCCGGGGATGAGTTGACTCATAGCCCACTTGAAATTCGAAAC
TTAG-------------------------------------------AAAGCAA-TTACACAGAGACGAGCT---TCATC
ATCAAAGAAAAAAGGCCACTACTACAAGACTAGC---ACACGGCAAGTCCATTGGCAACTTCTCCCTCCATGAA----CC
GGCAAAGAGTGCCGCAAGACAGAATATCAGGAAGCAATTGGCCGTTGTCTTCGGGCTTAATCCTATTGCGCCTCACCATT
ATCATCTGGAAATCCTGCCAGTGTGAAGAGCAATTAATTA--------
>SNPs
----------------------------------------S------------S----------S-----------S---
--------------------------------S------------------------------------S----------
--S--------S--------------------------------------------------------------------
----------------S---------------------------------SSS-------------------S-------
S---------------------------------------------------------------------S---------
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------------------S-------------------------------------------------------------
-----------------S-------------------------------------S--------------S---------
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-----------------------------SSSS----------------------------------SSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSS--------------------------------------------------------------
----------------S---------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------S----------------------------------------------------------
----S------------------------------S-S-----S---S----------------S---------------
-----------------S-----------S----------------------------------------------S---
--------------------S-------------------------------------S---------------------
---------------------------------------S---------------------------------S------
----------------------------------------------------------------S---------------
----------S--------------S------------------S-----------------------------------
S--------------S-----------------------S-------------------------S--------------
---S---------S------------------------------------------------------------------
---------------------------------S-------------SSSSSSSSSSSSSSSSSSSSSSSSSS-------
-------------------------S------------------------------------------------------
-------S------------------------------------------------------------S-----------
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-----S--------------------S------SSSS-----S-------------------------------------
--------S-----------------------------------------------------------------------
---------S------------------------------SSSSSSSS
>forward_150
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--------------------------------------------------AAGACAGTCCCGCGGTTTAG----------
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>reverse_1328
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-----------------------------------------------ACCGAAGGCAGTAGCGATTAG------------
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>forward_912
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------------GATGTGGCGTCGTTTCTCCT------------------------------------------------
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>reverse_2490
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---------GAATCCTGCCAGTGTGAAGAG------------------
