>input_sequence_84402
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--------------------------ATGAGAGTTTGGCGCATGTTCAAAGATTGGCTGGGTCTCCATAATGTGCATTCT
AGTGATTGGAGTGACGCGACTTCTGTTAAAGAGTGGTGGAGCCACAATGCTACCAAGAAGACACAATCACGAAAACCACT
TGCTTCTTTGATGCTTCTTATCTCTTGGGAGTTGTGGAATGAGAGGAATGCGCGGATCTTTCGTAATACTGCTGTCCCCG
TTGGAGTTATTGTTGCTAGGATTAAAGAGAAAGCGTCACTTTGGAGCATGGCGGGGGCGAGGCACTTGAGTAACATAATG
CCGCAAGAGTGA--------------------------------------------------------------------
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>chr6A_1_TraesCS6A01G092500
AGAAGCTGTTGGCCTTTTTTGAACAACCCACTTATTGAA-AGTGACATAAGGGATGTGGCTTGAATAGAATAAAAAGGGA
AGAAGGGGTTGATTCATCGTCATCTTCTCAAGATTGTATTCCTCTAACAATTTGCATAAGTTGGCAACTAAATCTGCCAC
ATACACCTCACAATCTGCAGATCCATGCAACATTGCAAATCAAACAAGCAACATCTCATTGCAAACCAAACAAGCCA---
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----------------------------------------------GGTATTGGGTATGGGTAACGTCATATAGTCCTAA
TCCCC------CACCGAAACAAGCGCTAATCTTCTCGGGCCACTGCTCCGGTAGTTTTATCGGCCCTCTGAGATTCAATG
GGGCCTACTGGGCCAGTATTAGGCTCCCGTGCAACGCGAAATCGGAAAACTCTAAAACAAACTTGAAGCTCGCGACCTTG
GTTTCCTTCGGTCACAGCCTCGCCTGGCGGCGCCTCTCCATGGTTGTCCGACCTGGATGCCAACCGATGTGGGGCTTGGA
CTACAGTGGCGACTGGCTAGGTTTGCACCAACACGAGGGACATCGCCTGCTCGGTCCGTTTGGTTGCACGGACGCAACGG
ACAGAGCCTTGTGGATATTACAACTCGTATATCCGTGTCCCGTTATATATTAATTACCTACAGGGCACGGGTAACGGTTA
ACCATTATGAGCTTGACCCAGAGCCATCACTATCATCACGTCGCTCCAATGGATGATCCATTGGGTTGTTTGATTAGTGT
ACTTTTTTTTAATATAATTTGAACTCTGTGAGAGTCGATTTTCTAGACCTTTTCCTCTCTTATTCACGATGCATGGGCAC
CTTTTACTACTCTGTTTTTTTTCACAC---------GCACGCCTGACAGAGGCACAGAGCGA-GGTTTCATTGTTGACCA
TGAATGACCCCCCAAAGGCCGCAGGCCACACAAGTCACAACGAGTCACCAACGAGGCAACGACCACTCCGCTCCACATTC
AAAATGGCTTTCGATGCAGATACACTATGAGAGTTTGGCGCATGTTCAAAGATTGGCTGGGTCTCCATAATGTGCATTCT
AGTGATTGGAGTGACGCGACTTCTGTTAAAGAGTGGTGGAGCCACAATGCTACCAAGAAGACACAATCACGAAAACCACT
TGCTTCTTTGATGCTTCTTATCTCTTGGGAGTTGTGGAATGAGAGGAATGCGCGGATCTTTCGTAATACTGCTGTCCCCG
TTGGAGTTATTGTTGCTAGGATTAAAGAGAAAGCGTCACTTTGGAGCATGGCGGGGGCGAGGCACTTGAGTAACATAATG
CCGCAAGAGTGATTGTTGTAATTCGGCCATGGGCCTTAACCTTTTAAACTTCTCTCTTAATCAATGAAAATGGCAAATCT
TTTGTCGCGTTTAAAAAAAAAAGCTTTCGAAGCGGAGGTCTCCAGGCTGGCTGCT--CG--TAGCAGCCAGCTCGCCGGC
GCGGGTGAGGATGGCGGTGGGGG-CACTGGCACGCAGCCGCGCCGCCCGGGCTGCCGCAGATGCCATGGTCTACCTCTTC
GTGGGCACCATCTGCGTGCTCTCCGCCGCAACATTCCCCTGCGCCGTCGCATTCCGGGCCTGCGGCGGGAACTGCAGCGT
GGCCGCCGC---------GATCTTGTTTTACTCTGGTATGCTCTCGCTGCTACTCAGGGTGCTAGCGATGGTGCTTTTCT
TCCTGCGCGCCGCCGGCAGCGA----GGGGTACTCGTCGCCCTT----------CCCG--CCCCGCCCCGCCAAATCGAC
GTCGCTTATGAC---GTTGATGACTGTGAAATGTGATAGGTCAAGGATGATGCTTTGGAGGATCGCTTCCGTGGGTGGCC
GCTACACCGGA---CGGCTGTACCGATCTGGAGGTTCTTCGTCGTGGCGACGTCGGTGGAATTCATCGGGCTCGTTCTTC
AGACGTGTGGA---TTTGAGGAGGTTTCTTACCTTCTCCGTGCCGCGGCTCTGTTGTGCAAGCTCCTAGTCATCGTCCTC
TTCTGCAACCGTGCTGCTGTGGCGCTGTGGAGGATGAATCCTCGACAGC-------------------------------
----------------------------CGGCTGCAGTTGCTGCTGTTGTGTAC---------------TGGGTG---TG
TGCG--GAGTAG---TAATCTATCTAGTGTAGTTGCTTCACCTTCAGTGCTTCTTAGTTCAGTGCTGCCTATATGAGTTG
ACGTATGCTCTTATGAGTTGCATA----ATATGGAATCAGGTCCCTCAGTTCACTGCCTATATGACTTGCTTGACGCACG
CTCTGATGAAGAGCTTCCATTCTATGTAAT------------CACTGCCCTCCTTGCTTAATTAATCCGGTGGGTTAATT
GCTGGCCGTGGAATCTGTCTAGGCGCCGG
>chr6B_1
AGAAGATATTGGCCTTTTTTGAACAACACACTTATTGAAGAGTGACATAAGGGATAGTGCTTGCATAGAATAAAAAGGGA
ATAAGGGATTGATTCATCATCATCTTCTCAAGATTGTATTCCTCTAACAATTTGCATAACTTGGCAACTAAATATGCCAC
ATACACCTCACAATCCGCAGATCCATGCAACATTGCAAACCAAACAAGCAACATCTCATTTTTGTACCGAGGATCAAGAA
TTGTAGCCATACCCCTTAGACTTTCTATTGGTGATATCGACATGCTACGGTCAGAGATGCTACGATTAACATGATTATGC
ATTAGAAAACACTACCACTGGACATTCGACCATTATGTAAACAAGACATCAACATATACTAACAAAAAAAGTGTAAACAA
GAAAACGACATAATAATAAAAATGCACTATCCTAATAAAACAACACCATACATAAACAATTAACATGATTATGCATTAGA
AAGTAGAAACACTATCACAGTACCACTAGACATGCAACAACTGACATGCTACCACTAGTACATCTGCATATATTCCTAGA
CAAAATCGTAGGTGATGCACTAGTGCAAGCTTTTAATGGGTGATACTCGCCCAATCTTTGTGTTCCTATCGGTGATGGAT
GAGGATGGAATCGGTGGAGGCTTGACGGTGACAGACGAGGATGGACTTGATGGAGGCTTGCCGCTGTCGGTGACGGAAGG
GAAAGTGCTCGATGGAGGCTTCAATTTTGGGGTGTACTCCTCCTCTCTCACTCCCATGACAAGATCATCCGCCACCTCGC
ACCCGTCTGGCCGTGGGAGGAGACAGACGGATAGAAGCTCGTGTGGGCGCCGTTTTATGCCGCTGGGGTGGAATGGGGAG
AAGATGGAGGGGTGTTGGTGGCAGAAGCTTGTGGAGAAGGAGGATGATGCGGTGGAGGGTCGGAGGCAAGACGTTGAGGC
TACAACAGTGGATGCGTGATGTGGAAGCTGCGACGGTGGAGGTGCGCGATAGGAGGAGATGGTGGCGGTCTCGGGCCGGA
GGGGATGGAGGCTGCGAGTGCAGGGCGGTGCGGAGGTTGCAACGGTGCTGGGTGCCGCCGGAGGTGGGGCTGGATCGGAG
GGGGTGGGTGGGTGAGGGGGAACCAGGGAAGAGTGATGGCTACGGGTGGCTAGGATAGGGCATGGAGTGAAGGAGAGAAT
GAGCTGAGAGAGGTGTGGGTGTGTGGTGAATATTATGGGTAAGCTGGGTATTGGATATGGGTATCGTCATACCGTCTTCA
TCCCCGTATTTCACCGAAAATAGCTT------------------------------------------------------
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------CCTTATGGATATTACAACTGGTATATCCGTGTCTCATTATAAATTAATTACCTAGAGAGTACGGGTAACGGTTA
ATCATTGTAAGCTTGACCGAGAGCCATCACTATCATCACGTCGCTCCAATGGATGATCCCTTGCGTTATTTGATTATTAG
TGTACTTTTTAATATAAATTGAGCTCTATGAGAGTCGATTTTCTAGACCTTTTCCTCTCTTATTCACGATGCATGGGCAT
CTTTTACTACTCTGCTTTTTTTTTCACACGCACGCGGCACGCCTGATAGAGGCACGGAGCGAGGGTTTCATTGTTGACCA
TAAATGACCCCCCAAAGGCCCCAGGCCACACAAGCCACAGCGAGTCACCAACGA--------CCACTCCACTCCACATCC
AAAATG--------------------------------------------------------------------------
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----------------------GCTTTCGAAGGGGAGGTCTCCAGGCTGGCTGCT--CGCATAGCGGCCAGCTCGCCGGC
GCGGGTGAGGATGGCGGTGGGGA-CACTGGCACGCAGCAGCGCCGCCCGCGCCGCCGCAGATGCCCTGGTCTATCTCTTC
GTTGGCACCATCTGCGTCCTCTCCGCCGCAACATTCCTCTGCGCCGTCGCATTCCGCGCCTGCGGCCGGAACTGCAGCGT
TGCCGCCGC---------GATCTTGTTTTATTCTGGTATGCTCTCCCTGCTACTCATGGTGCCAGCGATGGTACTCTTCT
TCCTGCGCGCAGCCGGCAGCGA----G--GTACTCGTCACTCACTCACTCGTCGCCCC--TCCCGTCCCGCCAAATCAAT
GTCGCTTATGATCATGTTGATGATTGTGGAATGTGATAGGTCAAGTATGATGTTGTGGAGGACCGCCTCCGTCCGTGGCC
GCTGGACCGGA---CGGCTGTAGCGATCTGGAGGTTCTTCGTCGTGGCGACGTCGGTGGAATTCATCGGGCTGGTTCTCC
AAATCTGTGGA---TTTCCAAAGGTTTCTTACCTTCTGCGCGCTGCGGCTCTGCTGTGCATGCTCCTAGTCATCGCCCTC
TTCTGCATCCGTGCTGCTGTGGCGCTGTGGAGGATGAATCCTCGACAGTCGGCTGCAGTTGCTGCATCCGTGCTGCTGTG
GCGCTGTGGAGGATGAATCCTCGACAGTCGGCTGCAGTTGCTGCTGTTGTGTTTGTGTACATGGTGTAGTGTGTG---TG
TACG--GAGTAG---TAATCTATCTAGTGTAGTTGCCTCACCTTCAGTGCTTCTTAGTTCAGTGCTGCCTATATGACTTG
ACGTATGCTCTGATGAATTTCAGTATATATATGTAATCAGGTCCCTCATTTCACTACCTATATGAC----TTGACGTACG
CTCTGATGAAGAGCTTCCATTCTATGTAATCGCTTAGGATTGCACTGCCCTCCTTGCTTAATTAATCGTCTGGGTTAATT
GCTGGACGTGGAATCTGTCTAGGC-----
>chr6A_1400
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-------------------------TTCGAAGAGGAGGTCTCCAGGCTGGCTGCCGGCG--CAGCGGCCGTCTCGCCGGC
GCTGGTGAGGACGGCCGTGGGGG-CACTGGCACGCAGCAGCGCCGCCCGC-CCGCTGCCGATGCCCTGTTCCATCTCTTC
GCCGGCACCATAAGCGTCGTCTTCGTCGCAACATTCCTCTACCTCGTCGTGTTCCGGGCCTGCGTCGGGAACTGCGCCGT
GGCCTCGGTAGTTTGGGAGATCTTGGTTTATTCTGGTTTGCTCTCCCTGCTACTCATGGTGCCAGCGATGGTGCTCTTCT
TCCTGCGCGCCGCCGGCAGCGGCACCGAGGTACTCCTCACTCACTCGATCGTTGCCCC--TCCCGCCCCGCGAAGCCAAT
TTCGCTTATGATG-------TGATTGTCAAATGTTGTAGGT-AAG---GATGATGTGGATGGTCGCGTCCGTCGGTGGCC
GCTAATCTGGGACGCGGCTGTGGCGTTCTTCCACC---------TGGCGGCCTTTGTGGGACTCATTGGTCTCGTTCTTC
TAATCTGTGGCAGGTTTCAAGAGGTTTCTTACCTTCTCCGCACTGCGGCTGTGCTGTGCAAGCTCCTACTCACCGTGCTC
TTCTCCATCCGTGCTGCTGTGGCGCTGTGGAGGATGAATCCTCAGCAGCCGGCTGCAGTTGCTGTTGCG-----------
-----------------------------------------------------------------GTAGTGTGATGAGTG
TACGGAGAGTAG---TAATCTATCTAGT----------------------------------------------------
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>chr6B_1400
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-------------------------TTCGAAGAGGAGGTCTCCACGCTGGCTGCCAGCG--CAGCGGCCATCTCGCCGGC
GGTTGTGAGGACGGCCGT-GGGG-CACTGTCACGCAGCAGCGCCGCCCGTGCCGCTGCCGATGCCCTGTTCCATCTCTTC
GCCGGCACCATCAGCGTCGTCTTCACGGCAACATTCCTCTACCTTGTCGTGTTCCGGGCCTGCGTCGAGAACTGCACTGT
GGCCTCGGTAGTTTGGGAGATCTTTGTTTATTCTGGTATGCTCTCCCTGCTACTCATGGTACCAGCGATGGTGCTCTTCT
TCCTGCGCGCCGCCGGCAGTGGCAGCGAGGTACTCGTCACTCACTCGTCAAA---CCC--TCTCGCCCCGCGAAGCCAAT
TTCGCTTATGATG-------TGATTGTCAAATGTTGTAGGTCAAG---AATGATGTGGAGGGTCGCGTCCGTCGGTGGCC
GCTAATCTGGCACGCGTCTGTGGCGTTCTTCCACT---------TGGCGCTCTTGGTGGGACTCATCGGGCTCGTTCTTC
AAATCTGTGGCGGGTCTCAAGAGGTTTCTTACCTTCTCCGCATTGCGGCTGTGCTGTGCAAGCTCCTACTCACCGTGCTC
TTCTGCATCCGTGCTGCTGTGGCGCTGTGGAGGATGAATCCTCAACAGCCGGCCGCAGTTGGTGCTGCG-----------
-----------------------------------------------------------------GTAGTGTGATGAGTG
TACGGAGTAGTAATCTAATCTATCTAGT----------------------------------------------------
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>chr6D_1400
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-------------------------TTCGAAGAGGAGGTCTCCAGGCAGGCTGCGCGCG--CAGCGGCCATCTCGCCGGC
GCTGGTGAGGACGGCCGT-GGGGGCACTGGCACGCAGCAGGGCCGCCCGCGCCGCTGCTGATGCCCTGTTCCATCTCTTC
GCCGGCACCATCAGCGTCGTCTTCGCCGCAACATTCCTCTGCCTCGTCGTGTTCCGGGCCTGCGTCGGGAACTGCACCGT
GGCCTTGGTAGTTTGGGAGATCTTGGTTTATTCTGGTATGCTCTCCCTGCTTCTCATGGCGCCAGCGATGGTGCTCTTCT
TCCTGCGCGCCGCCGGCAGCGGCAGCGAGGTACTCGTCGCCCCT----------CCCGTGTCCCGCCCCGCGAACCCAGT
GTCGCTTATGATG-------TGATTGCCAAATGTTGTAGATCAAG---GATGATGTGGATGGTCGCGTCCGTCGGTGGCC
GCTAATCTGGGACGCGGCTGTGGCGTTCTTCCACC---------TGGCGGCCTTGGTGGGACTCATCGGGCTCGTTCTTC
TAATCTGTGGCGCGTTTCAAGAGGTTTCTTACCTTCTCCGCACTGCGGCTGTGATGTGCAAGCTCCTACTCACCGTCCTC
TTCTCCATCCGTGCTGCTGTGGCGCTGTGGAGGATGAATCCTCGACAGCCGGCCGCAGTTGCTGTTGCG-----------
-----------------------------------------------------------------GTAGTGTGATGACTG
TACG--GAGTAG---TAATCTATCTAGTAGTA------------------------------------------------
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>SNPs
-----S-S-------------------S---------------------------SSS-----S----------------
-S-----S----------S----------------------------------------S-------------S------
---------------S-----------------------S--------------------SSSSSS-SS-SS-S-S----
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------------------------------------------------------S--------S-------SS---S-S-
-------------------SS---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSS----S--------------S-------------S-S-----S------------S--S-S--------------
-S----S-S---------S----------------------------------------S---S---S--------S-SS
SS-SS------------S----S----S---------------------------------------------------S
--------------S-------SS----------------------S--------S------------------------
-S------------------S-------------S----S--------------SSSSSSSS-------S--------S-
------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSS----------S--------------------------------S--------------
--------------------------------------S----------S--S------------S-------S------
--S--------------S-------------------S------------------------------------------
------------------------------S--------------S----------S-----S------------S----
---------------------------S--------------S-----------------S----------------S-S
-----------S-----------S---------------------S------S-S-----------S-----S-------
----S-----------------S---------------------------------------------------------
-S-SS------------S-S--------------------S--S---------S--------------------------
-------S------------------------------------------------------------------------
----------------------------------------------------SS-----------------S--------
-S----------------------------------S---------------------------------------S---
-----------S----S--S--SS---------S--------------S------S----------SSSS------S---
-------------------------------------------------------------------SSS----------
-----S------------------SSSSS
>forward_1461
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-TTTCCTTCGGTCACAGCCTC-----------------------------------------------------------
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>reverse_2335
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--------------GTTGTAATTCGGCCATGGGC----------------------------------------------
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