>input_sequence_84395
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------------------------------------------------------------ATGGACTTCTTGCCGGCGGA
CGGCACCGCCGGGTGCGCCAAGGGCGGGTCGCGGTGCGATGCTGACATCACGTCGCAGTGCCTGTCCGAGCTCCGTGCAC
CCGGCGGGGGCAACAACGCGTGCACGGTGTTCAAGAAGGATGAGTACTGCTGCACTGGCACGGCAGCAGACAACTGCGGG
CCGACCGACTATTCCAAGTTCTTCAAGGGGCAGTGCCCGGACGCGTACAGCTACCCCAAGGATGACGCCTCCAGCACCTT
CACTTGCCCCGGAGGCACCAACTACCAGGTCGTCTTCTGCCCATGA----------------------------------
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>chr4A_1_TraesCS4A01G296400
TAAGTGTTGTGGTTTTAGTTCAACTTAACTGAAACCATGACACTTATTATGATGGACCGAAGTTTTTTCTTCTGAATATG
TTAGGCGGGAAATGAAGCTATCAACATAACAGCAGACTGATGGACTTTTAACGTCCTGTACACGCTGTTTATGA------
--TAGATACATACAAGGTCAAGTCATCGGGTGCAATTAAGTTGC-CGTGGAAGTCATGCACCCACAACAAGCGGATTCGT
CAATATTTCTAGAAC----TTTTTTTTGTGAATAAATATTTCTAGGACTCTTGTGCAGATATTCTTTTTCCCGGACGCAT
TTAGAAAATATACAGAT-GAATCAAACTTGAGGCAAATGCAAAGAAGAAGAAAAAATTGAACCGATTGTGTGGTGGAAAT
CTTCCATACACGTCCAAAATTTCGCACCGGAGTACTACTATT---TACGTCCACAGTGGCTTGCCAAACTTAATTAGTAA
CGTGGAAGATTCATGGAACTTTTGTGTGTGAAAACGTCAAATTTCCACGTTACCGAGCAATGTAAAACAACTATAAATAC
CCACTTCAGACCAAAC-TCTACTAGCACACACAGTGGCATCACTAACACACAACAATGGCATCCCTAGCAGCCGCTTCCC
GTGTCGTGCTGCACACCCTCCCTCTTTTTCTCCTCGTTGCCGGCACCCACGCCGCCACGA--TTCACCATCACCAACAAG
TGCCAATTCACCGCGTGGGCGGCCGCCGTGCCGTCCGGCGGTGGCAAGCAGCTGGACCCCGGGGCGCAGCCATGGAGCAT
CGAGGTGCCGGCGGGCACGACCGGCGGGCGCGTGTGGGCGCGCACGGGGTGCAACTTCGACGGGAGCGACAACGGGAAAT
GCCAGACGGGGGACTGCGGCGGCGTGCTGTAGTGCACGGGGTACGGGCAGGCACCCAACACGCTGGCCGAGTTCGGGCTG
AACGGCTTCAACAACCTCGACTTCTTCGACATCTCCCTCATCGACGGCTTCAACGTGCCCATGGACTTCTTGCCGGCGGA
CGGCACCGCCGGGTGCGCCAAGGGCGGGTCGCGGTGCGATGCTGACATCACGTCGCAGTGCCTGTCCGAGCTCCGTGCAC
CCGGCGGGGGCAACAACGCGTGCACGGTGTTCAAGAAGGATGAGTACTGCTGCACTGGCACGGCAGCAGACAACTGCGGG
CCGACCGACTATTCCAAGTTCTTCAAGGGGCAGTGCCCGGACGCGTACAGCTACCCCAAGGATGACGCCTCCAGCACCTT
CACTTGCCCCGGAGGCACCAACTACCAGGTCGTCTTCTGCCCATGATCACGACCAACCTTATATATCCGG----------
--TTAAATCTCAGTCGACTGAGATTTAGCAATCCCGTATCATATATGTACAGAGAAATAGTAAGTTACCATATGTGTAAT
GTTACTTGGCGATACGACATGTGAACATTGATCATGACACTCACATGCACGATCC-ATTGTAAAAGCCTGGGAATAGGTG
AGTTGTGCAAGAATAAACTGCTCTTGGAGCAAGACACACATGATAATAATGTTATTTTAGCAATAGCAATACCACCATGG
ACTATAAAAATTGAGTTGGAAAGAGAGAAACAAAAAAAGAAAAGGTTTATCTTCTCTTAGCTAAGATGATTTATTAATAC
TAAAGATATAATATTTTCTTTATTGTATGATATTTCCTCTCTTACTGACTTGTTTTCTAGTTAATTCCATTACCCCATAA
ATTTAGTACTATGTTACTGAAGATAATATACGTTATCTCCCTAAATGAGGTGGGATATAAATCCAACAAATTCATTCATT
CAAATATAAAGAAGGCGTCGTCATAAACTCGTGAAACACTCTAGCGAGAGCGGTGGCGACCTGAGGGCGAGAGGCCATGG
CGGCGGCGCTGCCGCCGGCCAAGTGCCGGGGGCATGGAGAGAGGTTGGATGCTGGTGAGTTGGGTGGCCATTCCTTCGTG
GACTGGAGCATCTTCAAGCGGAGGGGGAGGGAGATCCTTCGACGGGCGCAAGATCGTGAGCTGTGTTTGCGGCGGATGAA
GGCCAAAGCAGATGCTTTCTTCAATTCGTCTCCAACTCAAGAGAAAATCAAAGGAGGAGGGGAGGGGATTGCTCCAACGA
CTTCATTGGGAGGGGAATCCGGCCTTGATCCCGCCTTCAGAGATGTAAATCGGGGGAATAAAGGTCAGTTTTGCCCGTCG
GTTTCCCTTGGTATTACTTCAGATTTGAAGATTAATGGAAACGGACAGCAAGGTATGAGTAATTGGGATGATAATTTTGG
TGATTTGGATGCGGAATTT
>chr4D_63
--------------------------------------------------------------TTTTTTCTTCTGAATATG
TTAGGCGGGAAATGAAGCTATCAGCATAACAGCAGACTGATGGACTTTTAACGCCCTCTACACGCTGTTGAAGTAATGGT
ACTAGATATATACAAGGTCAAGTCATCGGGTGCAATTATGTTTGTCGTGGAAGTCATGCACCCACAACAAGCGGATTCGT
CAATATTTCTAGAACTCTTTTTTTTTTGCGAATAAATATTTCTAGAACTCTTGTTCAGATATTCTTTTTCCCGGACGCAT
GTAGAGAATATACAGAGAGAATCAAACTTGAGGCAAATGCTAAGAAGAAGAAAAAACTGAACCTATTGTGTGGTGGAAAT
CTTCCATACACGTCCAAAATTTCGCAGCGGAGTATTATTATGTACTACGTCCACAGTGGCTTGCCAAACTCAATTAGTAA
CGTGGAAGATTCATGGAAAGTTTGTGTGTGAAAACGTCAAATTTCCACGTTACCGAGCAATGTAAAACAACTATAAATAC
CCACCTCAGACCAAACTTCTACTAGCACACACGGTGGCATCACTAACACACAACAATGGCATCCCTAGCAGCCGCTTCCC
GTGTCGTGCTGCACATCCTCCCTCTTTTTCTCCTCGCTGCCGGCACCCACGCCGCC---ACGTTCACCATCACCAACAAG
TGCCAGTTCACCGTGTGGGCGGCGGCCGTGCCGTCCGGCGGTGGCAAGCAGCTGGACCCGGGGGCGCAGCCATGGAGCAT
CGAGGTGCCGGCGGGCACGACGGGCGGGCGCGTGTGGGCGCGCACGGGGTGCAACTTCGACGGGAGCGGCAACGGGCAGT
GCCAGACGGGGGACTGCGGCGGCGTGCTGCAGTGCACGGGGTACGGGCAGGCGCCCAACACGCTGGCCGAGTTCGGGCTG
AATAAGTACATGGGCCAAGACTTCATCGACATCTCTGTCATCGACGGCTTTAACGTGCCCATGGACTTTCTGCCGGCCGA
CGGCACAGCCGGGTGCGCCAAGGGCGGGCCGCGGTGCGACGCGGACATCACGTCACAGTGCCCGTCCGAGCTCCGGGCAC
CCGGCGGGTGCAACAACGCGTGCACGGTGTTCAAGAAGGACGAGTACTGCTGCACCGGCACGGCGGCGGACAACTGCGGG
CCGACCGACTACTCGAGGTTCTTCAAGGGCCAGTGCCCGGACGCCTACAGCTACCCCAAGGATGATGCCACCAGCATCTT
CACTTGCCCCGGCGGCACCAACTACCAGGTCGTCTTCTGCCCATGATCACGACCAACCTTATATATCCGGACTGAGACTT
GGTTAAGTCTCAGTCGACTGAGATTTAGCAATCCCATATGATATATATACTGAGAAATAGTAAGTTACCATCTGTGTAAT
GTTACTTGGCGATACGACATGTGAACATCGAGCATGACA-TCACATGCACGATCCTATTGTAAAAGCGTGGGAATAGGTG
AGTTGTGCAAGAATAAACTGCTCTTGGAGCGAGACACACATGATAATAATGCTATTATAGCAAT---------ACCATGG
ACTATAAAAATTGAGTTGGAAAGAGAGAAACAAAAAAAGAAAAGGTTTATCTTCTCTTAGCTAAGATGATTTATTAATAA
TAAAGATACAATATTTTCTTTATTGTATGATATTTCCTCTCTAAGTGACAGGTTTTCTAGTTAATTTCATTACCCCGTAA
ATTTAGTACTATGTTACTAAATATAATATATGTTATCTCTCTAAATGAGGTGGGATATA---------------------
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>chr4D_653
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------------------------------TCCTCGTCGCTGCTGCGACCGACGCGGCGACCTTCACCGTCATCAACAAG
TGCCAGTACACGGTGTGGGCGGCGGCGGTGCCGGCCGGCGGGGGCAGGCAGCTGGACGCGGGG---CAGACGTGGAGCAT
CAACGTGCCGGCCGGCACGACGGGCGGGCGGGTGTGGGCGCGCACGGGGTGCAGCTTCGACGGCGCCGGCAACGGGCGGT
GCCAGACGGGCGACTGCGGCGGCAAGCTGCAGTGCACGCAGTACGGGCAGGCGCCCAACACGCTGGCCGAGTTCGGGCTC
AACAAGTACATGAACCTCGACTTCTTCGACATCTCCCTCATCGACGGGTACAACGTGCCCATGTCGTTCCTGCCGGCCCC
CGGCTCCCCCGGGTGCCCCAAGGGCGGGCCTCAGTGCCCCAGGGTGATCACGCCGCAGTGCCCCAACGAGCTGCGGGCCG
CCGGAGGGTGCAACAACGCGTGCACGGTGTTCAAGGAGGACCGGTACTGCTGCACCGGGTCGGCGGCCAACAACTGCGGG
CCGACCGACTACTCGAGGTTCTTCAAGGGCCAGTGCTCCGACGCCTACAGCTACCCCAAGGACGACGCCACCAGCACCTA
CACCTGCCCCGGCGGCACCAACTACCAGGTCATCTTCTGCCCATGATC--------------------------------
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>chr4A_694
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-------------------------------------------------------------------------CAACAAG
TGCCAGTACACGGTGTGGGCGGCGGCGGTGCCGGCCGGCGGGGGCAGGAAGCTGGACGCGGGG---CAGACGTGGAGCAT
AGACGTGCCGGCGGGCACGACGAGCGGGCGGGTGTGGGCGCGCACGGGGTGCAGCTTCGACGGCGCCGGCAACGGGCGGT
GCCAGACGGGGGACTGCGGCGGGAAGCTGCAGTGCACGCAGTACGGGCAGGCGCCCAACACGCTGGCGGAGTTCGGGCTG
AACAAGTACATGGGCCAGGACTTCTTCGACATCTCCCTCATCGACGGGTTCAACGTGCCCATGTCGTTCGTGCCAGCACC
CGGCACCTCCGGGTGCCCCAAGGGCGGGCCGCGGTGCCCGAGGGTGATCACGCCGCAGTGCCCCAGCGAGCTGCGGGCCG
CCGGAGGGTGCAACAACGCGTGCACGGTGTTCAAGGAGGACCGGTACTGCTGCACAGGGTCGGCGGCCAACAACTGCGGG
CCGACGGACTACTCGAGGTTCTTCAAGGGGCAGTGCTCCGACGCCTACAGCTACCCCAAGGACGACGCCACCAGCATCTT
CACCTGCCCCGGCGGCACCAACTACCAGGTCATCTTCTGCCCATGA----------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------------
-----------------------S-----------------------------S---S-----------S-S-S------
--------S-----------------------------S---SS------------------------------------
----------------------------S----------------S--------S-------------------------
S----S----------S-----------------------S---------------S------S----------------
--------------------------S-------S--S---S----------------------------S---------
------------------SS------------------------------------------------------------
----S---------------------------S-----------------------------------------------
---------------S----------------------------------------S-----------------------
-----S-------S---------S-----------------------------------S--------------------
---------------------S----------------------------------------------S-------S-S-
-----------------------------S----------------------S---------------------------
---SSS-S--SS---------------------------------------------------------S-------S--
----------------------------S----------S--S-------------------S------------S----
--------S-------------------------------S--------------S--------S--S------------
-----------S--S-S---------------------------S------------------------S----------
------------S-------------------------------------------------------------------
------S----------------------------S---S------S---S--------------------S--------
----------------------------S--S-------S---------------------------S------------
------------------------------S--------------------S----S-------SSSSSSSSS-------
-------------------------------------------------------------------------------S
--------S---------------------------------S-S----SS---------------S---------S---
------------------S--S--------S--------S-------------------SSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSS
>forward_734
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--------------------------------------------------------------------------AACAAG
TGCCAATTCACCGC------------------------------------------------------------------
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>reverse_2003
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--CTGGAGCATCTTCAAGCGGA----------------------------------------------------------
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