>input_sequence_84384
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---------------------ATGGTGGTGCACGTGGTGCTCCTGGCCGTGCCGGCGGTCGGCGGGTTCATGCAGGCGTT
CAAGTTCTCGGTCCTGCTCTGGCCGTTCAACATCACGCTGCCGCTGCTCCGCCACCTGCCGCGCGTCTGCCTCACGCTCA
TGGCCGCCGCGGCGCACTACGACGCCGAGCTGCGCGCGTACCTCACCGGCCGCCGGACGGTGCCGCTGCCGGAGCCGAGG
TACTCCACCCTCCGCGGCGCGCAGAGGCGCACGCGTGAGCAGCTCGCCGCGCACGCCATGATCGCCCTCGTCGACATCTC
CTACTGA-------------------------------------------------------------------------
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>chr2D_1_TraesCS2D01G515200
AGCTACGTCGACAATGATCATGTGACTCCACGCACTAGTGGCGAGAATAATCTAACCCAGCCTCCAAGAGAAGA----CC
TTATCCATCTGCATGTTTTTCCACCTAGACGCCGAAGAGGTGAACACATTTGTTCTTGTGTAAAAAAGGAAAA-GAAAAT
GGAAGCTTGTGCCCAGCGGCCGATGCCG----------------------------------------------------
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----------------------------------ATAGGCGATGGCTACTTGATTCCTTGTCGAACGCTAGAGTTACCTT
ACCTGTGGGGCCAGAGGCTCCCAACTGGCACCGAGTTTGGGCCCGGGCAGGATGGATGCCGACACGACATGTCCCGGCCC
AATCCAGTCTGCTTTAGTTTAACACCACACACCAGCATTCTGCTTTTAGTTTTGGTACAGTCCACA---TACTACTTTCT
TCTTTTGGTTCGAGTTGTGATTGTGAACAGAAGCATCTACAGAATCGGACGTGTACCAGCGCTTCCACAGAATTAACAGC
GCCGCAGAACTGGCTGGAGTA--------CCTACCTTTGTA----CG---------------------------------
------TATTCTGTGGACGCCATCTGGACATGTAATGTAATCTCTCAGAAGACATACGCGGCGGCTCATTGTGAAGTTAC
AGCAACGACCGGTGCGCCACGCGCGGAGGACATGTGTCCATCCGCCGCTGGGCCGTTCGTCGCGACACCTCAACGACTGT
AGTCACGCTGGTTCAATTCGCCGCGGACAATGTCAGCCGGCCGCACTGTCATGAGCTGTGACATGGCAGTACGTGGGCAC
TGTAGAACTGAGTCCATTCCCTTCCACGA---------------------------------------------------
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----------------TAAAACATCCCTCGATCGCCATCGCCGGCCATTATTAGTTTCTCCAACTCCAAGCCAAGCCAGT
GCTCTTCGCTCTGGAAT------CCTAGTTAATGGCCGGCCGGTCAGGTACGTGGTAACTAAC---CACCAGCTAGCCAG
CAGCGCCACCTCGAGAGCGTCGCCATGGCAGGGGCAGAGGGGCCGGCCGTGTAGCGGGCAGCGCGCGGCGGCTGGAAGAG
TTATCTGGAGGTCGATCGGCGATGGTGGTGCACGTGGTGCTCCTGGCCGTGCCGGCGGTCGGCGGGTTCATGCAGGCGTT
CAAGTTCTCGGTCCTGCTCTGGCCGTTCAACATCACGCTGCCGCTGCTCCGCCACCTGCCGCGCGTCTGCCTCACGCTCA
TGGCCGCCGCGGCGCACTACGACGCCGAGCTGCGCGCGTACCTCACCGGCCGCCGGACGGTGCCGCTGCCGGAGCCGAGG
TACTCCACCCTCCGCGGCGCGCAGAGGCGCACGCGTGAGCAGCTCGCCGCGCACGCCATGATCGCCCTCGTCGACATCTC
CTACTGATGTCGCGTAGCCAACAGCTGCTTAATTCTGGCGGTGCTCTTCTTGGTTTGATAGGTTGGTTCAGAGCT-----
-----TTTTTTTGGCGGTGCTCTTCTTGCTC-GTATAGGTTAGTTATAAGAATTTCAATTGGATCATGCACATAGCCACA
TGGGTCTTCCATTTCTCTTTGCCTGCACTCGTCGGCTGCGTTC-------------------------------------
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------------------------------------------------ATGAATTTGTTGTGATCTGTACTCATTTATGA
AATGCAAAGGAGCTTAAATCAGGACATAGCCGGGTTCATATTGTTTTTTGAAACAGTTGCACCGATCTTATTCCTTGTGA
AAGATGGTTGGAATAGGAAAGAATCCAACCACAAGGTCCACAAGACTACAAATAAAAAACATTGGAAACATATACACTAT
AGCTC------CGGGATATGATTTGCACAGAGCAAAAGAAAAAGAAAGCACATTCAAGGACCATCGTCCGAACATGTTTC
ACATTTGCCGAGTCCATTTTGAATCCTGATCTTGCTGAATCCTTCACCTGCATGGGAAAATAAATGCAGATAAATACATG
TGTGGACA------------------------------------------------------------------------
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-----------------TTGTATATCTTCTCCATGGAAGGAGCA------TAGCTCACAGTTTGAGGTCATATGTTAAAC
TTCGGTAGTTTGTACTACCAAGGTTGTACTAAAGCAACCTCAATTAATATGGATC-AGGGGGAGTAAAATTGTTTGACGT
CATATGTGAAAGTACTTTGTGGATTTTGTGGAAGTTTGGGAACCCTTATTCATTTTTACTCAGATATGAGATGTTGAAAT
AAATGAGGAGCTAGTTAAGAAATGTCA-ATCCTCATTATTTGGGTAATT-CCAATGGAACATCGAGGCTTTTT-AAAAAA
TCGTTTGCATACATAAAGCTGCTAAGAAGAAGAAAGTCAAGTTTTTGGTCATACATATTTTTTATATTTAAGCTGTGTAC
TTAAGATCATGAAGAGATATCAACCGCAAAAAAAGAAGATCATGAAGAGATATTTGGTCCGTCTACACTGTTCAATATGC
CCGGTGTT
>chr2B_1
AGCTACGTCGAGAATGATCATGTGACTCCACGCACTAGTGGCGAGAATAATCTAACCAAACCTCCAAGAGAAGACC-GCC
TTATCCATTTGCATG---TTCCACCTAGACGGCGAAGAGGTGAACCACTTTGTTTTTGTGTAAAAAAGGAAAAGGAAAAT
GGAAGCTTGTGCCGAGTGGCCGACGCCG----------------------------------------------------
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--------------------------------------GCGATGGCTACTCGATTCCTTGTCGAACGCTAGAGTTACCTT
ACCTGTGGGGCCAGAGGCTCCCAACTGGCACCGGGTTTGGATTCCGGTAGG-----TGCCGACACGACATGTCCCGGCCC
AATCCAATCTGCTTTAGTTTAACACCACACACCAACATTCTGCTTTTTGGTTTGGTACAGTCCACA---TGCTACTTTCT
TCTTTTGGTTCGAGTTGTGATTGTGAACAGAATCATCTACAGAATCGGACGTGTACCAGCGCTTCCACAGAATTAACAGC
ACCGCAGAACTGGCTGGAGTA--------CCCACCTTTGTACTTACG---------------------------------
------TATTCTGTGGACACCATCTGGGCATGTAATCGCC-----CAGAAGGCATACGCGGCGGCTCAGTGTGAAGTTAC
AGCGATGGCCCGAGTCTCA----CGGAGGACATGTGTCGATCTGCCGTTGGCCAATTCGTCGCGACACCTCAA-------
-------CTGATTCAATTCGCCACGGACAATGTCAGCAGGCCGCACTGTCATGAGCTGTGTCATGGCAGTACGTGGCCAC
TGTAGAACTGAGTCCATTCCGCTCCACGA---------------------------------------------------
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----------------TAAAACATCTTTCGATCGCCATCGCCGGCCATTATTAGTTTCATCCAACT----CCAGGCCAGT
GCTCTTCGCTCTGGAAT------CCTAGTTAATGGCCGGCCGGTCAGGTCCGTGGTAACCA---ACCACCAGCTAGCTAG
CAGCGCCACCTCGAGAGCGTCGCCATGGCAGGGGCGGAGGGATCGACCGTGTAGCGGGCAGCGCGCGGCGGTGGGAGGAA
TTATCTGCAGATCGATCGGCGATGGTGGTGCACGTGGTGCTCCTGGCCGTGCCGGCGGTCGGCGGGTTCATGCAGGCGTT
CAAGTTCTCGGTCCTGCTCTGGCCGTTCAACATCATGCTGCCGCTGCTCCGCAACCTGCCGCGCCTCTGCCTCACGCTCA
GGGCCGCCGCGGTGCACTACGACGCCGAGCTGCGCGCGTACCTCACCGGCCGCCGGACGGTGCCGCTGCCGGAGCCGGGG
TACTCGACCCTCCGCGGCGCGCAGAGGCGCACGCGTGAGCAGCTCGCCGCGCACGCCATGATCGCCCTCGTCGACATCTC
CTACTGATGTCGCGTAGCTACGAGA------------------------TTGGTTTGATAGGTTGGTTCATACGTAATTT
GTTTGTTTTTTTGGCCGTGCTCTTCTTGGTTTGTATAGCCCAGTTATAAGAATTTCCTTTGGACTCTGCACATAGCCAGA
TAGGTCTTCCATTTCTCTTTGCCTGCATTTGTCGGCTGCGTTC-------------------------------------
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------------------------------------------------ATGAATTTATTGTGATCTGTATTCATTTATGA
AATGCAAAGGAGCTTAAATTTTGACATACCCGGGTTCATATTGTTTC-TGAAACAGTTGCACCGATCTTATCCCTTGTGA
AAGATGGTTGGAAGTGGGAAGAATCCAACCATAGGACTACAATTG-----AAAAAAAAACATTGAAAACATATACACTA-
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>chr2A_1
AGCTACGTCGACAATGATCATGTGACTCCA-GCACTAGTGGCAAGAATAATCTAACCCAGCCTCCAAGAGAAGACCGGCC
TTATCCATCTGCATG---TTCCACCTAGATCGA-AAGGAGTGAACCGGCTTGTTCTTGTGTAAAAAAGGAAAA-GAAAAT
GGAAGCTTGTGCCCAGTGGCCAATGCCGATGGGAACGTATTCTCTAACATCATGAAGGGATGTCACGAAGCTACAGTGCA
ATCCCAGTGCAAAACAAAGAAGGGATGTTATAAACACAGTAGCAAAGACACTATGCACAATTACTATTCATAGAAAATAA
AATCTGAAATTACTTTTATTTTATCATAATTTTGTTTGTATGTAATTTTTATAAATGTATACAGTACATTTGTAATTTGT
AAATTAATTCAAGTCATTTTATGCTTAATCTTATGGATGTGAAGAAGGAATGTCAGGGTACCGTAGCTTCCCTGGCATTC
CTTCGTGATGTTAGAGGATTTCGTTCCGATGCCGATAGGCGATGGCTACTTGATTCCTTGTCGAACGCTAGAGTTACCTT
ACCTGTGGGGCCAGAGGCTCCCAACTGGCACCGGGTTTGGGGCCCGGCAGG-TGGATGCCGACACGACATGTCCCGGCCC
AATCCAGTCTGCTTAGTTTTAG-ACCACACACCAACTTTCTGCTTTTAGTTTTGCTACAGCCCACA---TACTACTTTCT
TCTTTTGGTTCGAGTTGTGATTGTGAACACAACCATCTACAGAATCGGACGTGTAGCAGCGCTCCCACAGAATTAACAGC
GCCGCAGAACTGGCTGGAGCA--------CCTACCTTCG----TACG---------------------------------
------TATTCTGTGGACACCATCTGGGCATGTAATAATCGCTG--AGAAGGCATACGCGGCGGCTCAGTGTGAAGTTAC
AGCGACGGCCGGTGTCCCA----CGGAGGACATGTGTCGATCTGCCGCTGGCCAATTCGTCGCCGCACCTCAA-------
-------CTGATTCAATTCGCCGCGGACAATGTCAGCAGGCCGCATTGTCATGAGCTGTGTCGTGGCAGTACGTGCGCAC
TGTAGAACTGAGTCCATTCCGCTCCATGA---------------------------------------------------
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----------------TAAAACAACCCTCGATCACCATCGCCGGCCATTATTAGTTTCATCCAACT----CCAAGCCAGT
GCTCTTCGCTCTGGAAT---ATTCCTAGTTAATGGCCGGCGGGTCAGGTCCGTGGTGACTAACCACCACCAGCTAGCTAG
CAGCGCCACCTCGAGAGCGTCGCCATGGCAGGGGCGGAGGGACCGGCCGTGTAGCGGGCAGCACGAGGCGGCTGGAGGAG
TTATCTGGAGGTCGATCGACGATGGCGGTGCACGTGGTGCTCCTCGCCGTGCCGGCGGTCGGCGGGTTCATGCAGGCGTT
CAAGTTCTCGGTCCTGCTCTGGCCGTGAAACATCACGCTGCCGCTGCTCCGCCACCTGCCGCGCGTCTGCCTCACGCTCA
GGGCCGCCGCGGCGCACTACGACGCCGAGCTGCTAGCGTACCTCACCGCCCGCCGGACGGTGCCGCTGCCGGAGCCGGGG
TACTCCACCCTCCGCGGCGCGCAGAGGCGCACCCGTGAGCAGCTCGCCGCGCACGCCATGATCGCCCTCGTCGACATCTC
CTACTGATGTCGCGTAGCCAACAGCTGCTTAACTCTGGCGCTGCTCTTCTTGGTTTGATAGGCTGCTTCAGAGC------
-----TTTTTTTGGCGGTGCTCTTCTTGGTC-GTATAGGTTAGTTATAAGAATTTCAATTGGATCCTGCACATAGCCACA
TGGGTCTTCCATTTCTCTTTGCCTGCATTCGTCGGCTGCGTTAGGGTGCGTTTGGTTGCAAGGGCGGTCATGAATGGGTT
GGGATCGTTCAGAAAATAGACATGTTTGGTTATAAAGCACATGAATGGTTCGAGCCAAAAAAAAAGAATATGCCATGAAG
ATGCTGAACCGTTCCACCCAACCAAATCAGTCGAATCAAATGGCCACCCTTTGCATGCATGACTATGTGAGCATGACTGG
TGGTCCCGTCCTAAATAATTAGTTCACCACTTATATTCAGTCAAATACATGAATTGAATGGTTCAATCCCAAAAAAATTG
AATGGTCCCAACCCATTCATACGACACCTTCAACCAAACGCATCCTTAATGAATTTGTTGTGATCTGTATTCATTTATGA
AATGCAAAGGAGCTTAAATTAGGACATACCTGGCTTCATATTGTTTTTTGAAACAGTTGCACCGATCTTATTCCTTGTGA
AAGATGGTTGGAATTGGCAAGAATCCAACCACAAGACTACAAAT----------AAAATCACTGGAAACATATGCACTAC
AGCTCGGGGTTGGGGATATGATTTGCACAAAGCAAA-GAATAGGAAAACACATTCAAGGAACATCGTCCGAACAGGTTTC
ACGTTTGCCGAGTCCATTTTGAACCCTGATCTCACTGAATTCTTCAACCGCGTGCGGAAATAAATGCAAATAAATACATG
TGTTGACA------------------------------------------------------------------------
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-----------------TTGTATATCTTCTCC------------------TAGCTCATAATTTGAGGTCACATGTTAAAC
ATTGGTAGTTTGTACTACCAAACTTGTACTAAAGCAACATCAATTAATATGGATC-GGGGGGAGTAACATTGTTTGACGT
CATATGTTAAAGTGCTTTGTGGATTTTGTGGATGTTCGCGAACCCTTCTTCATTTTTACTCATATATGAGATGTCGAAAT
AAATGAGGAGCTAGTAAAGAAATGTTA-ATCCTCATTATTTGGATAATTCATAATGGAACATCAAGGCTTTTT-AAAAAA
CCGTTTTCATAGATAAAGCTGCCAAGAAGAAGAAAGTCAAGTTTTTGCTCATACATTTTTTGG-TATTTAAGTTGTGTAC
TTAAGATCATGAAGAGATA-------------------------------------------------------------
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>chr2A_222
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------------------------------------------------------------------------GTTACCTT
ACCTGTGGGGCCAGATGCTCCCAATTGGCACCGGATTTGGGCCCCGGCAGG-TGGATGCCGACACGACATGTCCCGGCCC
AATCCAGTCTGCTTAGTTTTAG-ACCACACACCAACTTTCTGCTTTTAGTTTTGCTACAGTCCACATACTACTACTTTCT
TCTTTTGGTTCGAGTTGTGATTGTAAACACAACCATCTACAGAATCGGACGTGTAGCAGCGCTCCCACAGAATTAACAGC
GCCGCAGAACTGGCTGGAGTAGTGGACTACCTACCTTCGTA----CTACGTACCGGCTGGAGTAGTGAACTGGCTGGAGG
AAGTACTATTCTGTGGACACCATGACCATCTG------------------GGCATACGCGGCGGCTCAGTGTGAAGTTAC
AGCGACGGCCGGTGTCCCA----CGGAGGACATGTGTCGATGTCCCGCTGGCCAATTCGTCGCCACACCTCAA-------
----------------TTTGCTGCGGACAATGTCAGCAGGCCGCACTGTTA--AGCTGTGTCGTGACAGTACGTGCGCAC
TGTAGAACTGAGTCCATTCCGTTCCATGATAAGGGCTTTTTTGATTCAAAGAAATTTTATAGGATTTTCGGAGGATTGAA
ATTTTTAATATTTTTTCCTATATTAATCTTTTGATTCATAGGATTGGATCTCATAAAAAAATTTCTTATGGAATCTTTTG
TACTACATTTTATAGAAAATTTAACATCCCCTTCAACTTCTTTTTACAATTCCTTTATTTTTCCGGTGGCATCAAACAAT
CATTACTAATTCTATAGAATTCAAATGGACATGCCACTCCAACCCTACACTTTTTCTATTCCTACGTTTTTAAAATCCTA
CAAATCAAAGAAGCCCTAAAACAATCCTCGATCGCCATCGCCGGCCATTACTAGTTTCATCCAACT----CCAAGCCAGT
GCTCTTCGCTCTGGAATCCTATTCCTAGTTAATGGCCGGCGGGTCAGGTCCGTGGTGACTA---GCCACCGGTTAGCTAG
CAGCGCCACCTTGAGAGCGTCGCCATGGCAGGGGCGGAGGGACCGGCCGTGTAGCGGGCAGCGCGAGGCGGCTGGAGGAG
TTATCTGGAGGTCGATCGACGATGGTGGTGCACGTGGTGCTCCTCGCCGTGCCGGCGGTCGGCGGGTTCATGCAGGCGTT
CAAGTTCTCGGTCCTGCTCTGGCCGTTCAACATCACGCTGCCGCTGCTCCGACACCTGCCGCGCGTCTGCCTCACGCTCA
GGGCCGCCGCGGCGCACTACGACGCCGAGCTGCGCGCGTACCTCACCGGCCGCCGGATGGTGCCGCTGCCGGAGCCGGGG
TACTCGACCTTTCGCGGCGCGCAGAGGAGCACTCGTGAGCAGCTCGCCGCGCACGCCATGATCGCCCTCGTCGACATCTC
CTACTGATGTCACGTAGCCAACAGCTTCTTGATTCTGGCGGTGCTCTTCTTGGTTTGATAGGTTGGTTCAGAGC------
-----TTTTTTTGGCGGTGCTCTTCTTGGTC-GTATAGGTTAGTTATAAGAATTTCAATTGGATCCTGCACATAGCCACA
TGGGTCTTCCATTTCTCTTCGCCTGCATTCGTCGGCTGCGTTC-------------------------------------
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------------------------------------------------ATGAATTTGTTGTGATCTGTATTCATTTATGA
AATGCAAAGAAGCTTAAATTAGGACATAGCCGGGTTCATATTGTTTTTTGAAACAGTTGCACCGATCTTATTCCTTGTGA
AAGATGGTTGGAAGTGGGAAGAATCCAACCACACG--------GACTACAAATGAAAAACATTGGAAACATATACACTAC
AGCTC------GGGGATATGATTTGCACAAAGCAAAAGAAAAGGAAAACACATTCAAGGACCATCGTCCGAACAGGTTTC
ACATATGCCGAGTCCATTTTGAATCCTGATCTCGCTGAATTCTTCACCTGCAT---------------------------
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>chr2B_1679
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---------------------------------------------------------------------------ACTAC
AGCTC------GGGGATATGATTTGCACAAAGGAAAAGAAAAGAAAAGCACATTCAAGGACCATCGTCCGAACAGGTTTC
ACATTTGCCGAGTCCATTTTGAATCCTGATCTCGCTGAATTCCTCACCTGCATACGAAAATAAGTGCAGATAAATACATG
TGTTGACCCGGTTCTTTGAATGTTACAGGGATCGTTGCTAATAGGGAAAAGAACAACCTTTAAGTCATGGTGAATGACCG
AGGGAACTCGAAATGCTCAAGAACCTTGTTGGTGAATGACCGAGCATAAGAAGTGCTACTTGAAGGCCATGGACGTGCTT
GAGAAACCAGGCAACACTTGTATATCTTCTCCATGAAAGGAGCATATATATAGCTCATAGTTTGAAGTCATATGCTAAAC
TTCGGTAGTTTGTACTACCAAATTTATACTAAAGCAACATCAATTAATATAAATTGGGGGAGAGTCACATTGTTTGATGT
CATATGTGAAAGTACTTTTT-GATTTTGTGGACGTTTGCAAACCCTTCTTCATTTTTACTTAGATATGAGATGCTGAAAT
AAATGAGGAGCTAGTTAAGAAATGTTATATCCTCATTATTTGGATAACTCCCAATGGAACATTGAGGCTTTTAAAAAAAA
TCGTTTGCACAGATAAAGCTGCCAAGAAGAAGAAAGACAAGTTTTTGCTCATACATTTTTTGT-TATTTAATCTGTGTAC
TTAAGATCATGAAGAGACAG---------------------------------TTGGTCCGTCTACACTGTTCAATATGC
CCTGTGTT
>SNPs
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---------------SSS-------------S-------------SSS--------------------------------
----------------S---------------------------------------------------------------
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---------------------------------S----------S------S----------------------------
----------------------------------S---------------------------------------------
--------------------------------S-----------------------------------------------
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------------------S-----------------SSSSS--SS------S----------------S-----------
---S---S------SS---SSSS---------------S---S--------S-SS------------------SSSSSSS
SSSSSSS---S--------------------------S----------------------S-------------------
--------------------S-----------------------------------------------------------
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----------------------------------------------------------SS-S-SSSSSSS----------
-------------------------------------------------S---------------------------S--
-----------------------------------S-----S----------------------------------S---
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S----------------------------------------------------------------------------S--
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----------------------------S------------------------------------S--------------
---------------------------S----------------------------------------------------
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---------------------------------------------------------------------S----------
-------------------S------------------------------------------------------------
--------------S--S-----------------SSSSSS--------------------------------------S
-----------S-----------------S------------S-------------------------------S-----
--------------------------------S-------S-------------S-------------------------
---S----------------------------------------------------------------------------
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-----------------------------------S---------------------S----------------------
---------------------SS---------------S-----------------S----------S------------
--------------------------------S-----S--------S--------------------------------
-------------------------S-----------------S------------------------------------
-----------S----------S------------------------S--------S----S-S----------------
-------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------------------
--S-----
>forward_1051
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-----------------------------------------------------------------------AACGACTGT
AGTCACGCTGG---------------------------------------------------------------------
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>reverse_2580
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-------------------CAGGACATAGCCGGGTTCAT-----------------------------------------
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