>input_sequence_84381
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---------------------------------------------------ATGGCGGCGGGGGGCGTGTGGGTGTTCAA
GAACGGAGTGATGGAGCTGGAGCAGGAGGCGACGAGCAGGAAGTCGCTGGTGTACGTGCCGGGGAACGAGACGATGAGGT
CGCTGGAGGCGCTGGAGCGGCGGCTGGGGTCGCTGGGGTGGGAGCGCTACTACGAGGACCGCGCCATCGTGCAGCTCCAC
AAGCGCGGCGGCGTCGACCTCATCTCCCTTCCCCGGGACTTCTCCCGGCTCCGCTCCACCCACATGTATGACGTCGTCGT
CAAGAACCGCGAGCACTTCAAGGTCGTCGACCTCTAG-------------------------------------------
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>chr2D_1_TraesCS2D01G115400
TGTGGTCTATGTATTCACACATGTATTACGATTTCCGGACAATACAATTATAGCATGAATAATAGACTATTATCATGAAC
ACAGAAATATAATAATAACCATTTATTATTGCCTCTAGGGCATATTTCCAACAATATGGAGCTATGCAGGGCACTTCTTT
GGGCTCTATGGCTAATTCGGAACAACTTAACGATTGAAGGAATTTTCCCGTTGCATCCGGCTAATGTTATCTACAAATGC
AACTTGTTTTTACAGCAATGGAGTCTGATGGGGAGGCGCAAAGATGCTGAGCTGATGAAGCACGCCCAAAAACGACTTCA
GCAAGTGTACGTGTTGGCTAGGGAGTCTGCGGCTACTACCTAGTTAGAGTGGCCTCTTTTGTTTTCGCGAGCCTGCGTGC
TCTGTTAACAGCCAATGGGCCTGTATCTGCCCGCGGCCTTTTCCGGCTTAGAACCCTTTGACTTTCTATGTATGCTCGGC
CCGAGGGCTTTCGAGACTGTAACTCTGTAAGTTTTGATTGGTCTGTTACTCTGCCTTATTGTGGGATTTATTAATTTAAA
GCCGGAGGCATCTAGCGTCTTTGTTCTAAAAAAATATTAGTAGCTCGAGACTTCGAGGGTGCCGGCCCACTTGCCCCAGC
AGATTAATGCCTGCCTCGAAAGTAC-TACAATGTACCGAGCCTGAAGAACAAATGTACGTTGTTGTCGAATAGGTGAAAC
ATACGTATACACATAACCGAAAAGAATTACACGAATATATACGAAACACACGTCCCTGTCGATCTATGCGAGCGCATCTT
CTTACTGCACTCTAGAACAGGCAGTGATTGCCAGATGACTTACGTGTCACACCGGCTTCCATGCGCCTATATAAGCACAT
CACCCGCACACCATCAGCAGCATCGGATAACCAGCCTGCAGCAAGCAGTA--------CAACACTAGCAAAGATCGACCT
ATC--GAGCAAAGGTAGCTAGCTTCTAAGGAGACTAGGAGGTAGAAGAAAGATGGCGGCGGGGGGCGTGTGGGTGTTCAA
GAACGGAGTGATGGAGCTGGAGCAGGAGGCGACGAGCAGGAAGTCGCTGGTGTACGTGCCGGGGAACGAGACGATGAGGT
CGCTGGAGGCGCTGGAGCGGCGGCTGGGGTCGCTGGGGTGGGAGCGCTACTACGAGGACCGCGCCATCGTGCAGCTCCAC
AAGCGCGGCGGCGTCGACCTCATCTCCCTTCCCCGGGACTTCTCCCGGCTCCGCTCCACCCACATGTATGACGTCGTCGT
CAAGAACCGCGAGCACTTCAAGGTCGTCGACCTCTAGATATGCATCTGCGCGCCTAAGCTTCCCCAACTCAATTAGGTAT
TTATCCATACATACATACTGCTACCTCAGCCTAT------------------AAAAAGTCTTATATTTTGAGATGGAGGT
AGTACAAATAAACATAAACGCGGTGTGTGATGATGTATTTGTGTGATGTAACTGTGTACACGTACTTCCGGTTCGTGGAG
ATATTATATGTATATACTATGTGTTGTCTATATATATGG--------------TTGCAAAAAGTATGATGTATCCAGCTT
CCTTTTCTGTGGAATAAAATGAATGAAGGAATATTAAGGCTGTGTGTGTGTGCGTTGCTTGCGAGGTCGATCGATCATCT
TATGTGCAGCGGGCGTAGTGCAGGGGTA----------------------------------------------------
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----------------------------------------------------------------TCGATCGATCGATCTG
GTTGTGTTTGCTACTGTGGCTACAAGTCACTGTACGTGGCCAGCCTGCATGCATACGTGCATGCACTTGTGTATATCTGG
ACTTATCGCTGC------------CCTATAAAGGTCTTGGGCGTCTAGACTCTAGAGGTAAACGAACAGCGCCATGCCAC
TCCTTATCTGCCATAGATTCTCTATAGGGGCAGAAAAAGCTCAAGTTAAGCC-----TGCCAATTAGATGCAGTGTGACG
TTGCCAACTGAAATAATCTTCTCCGTAGAGCTAGGGCTGGGATGGCCCTAAGGAATTTGTGTGGGTGCGTTTGTGCGCTT
CTGACGAGAGCATTTCTCATCTTTTTC-----------------------------------------------------
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-----------------------TTGCCTTGTTGTTGAAAAAAATTTCTTCGAGATGTGGTGGTGGGCTGTTCCTTTGCA
ATCAGAAGTATGATGCGCCAGGCTAGGGGGTACGTCCAGTCCAGAATGTTA-------TGAGAGATGAGCCCATAAAGTG
TGAGTCGGAGATGTG--ATATTCTTGATGGTCAGTGAGCCACGAGTGTCGATGTCTTAAAAAACCTTGCGTTTCGGGTAT
TCTAGATCTTTCAAAGAATGGTTAGCAACACAGTCGCTAAGTAGTGCCGTCAAGAAGGAGGAATTGGGTGAGTAGAGGAT
GATGTGG
>chr2B_597
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------------------------------------TTAGTAGCTGGAGACTTCGAGAGTGCCGGCCCACTTGCCCTAGC
AGATTGATGCCTGCCTGGAAAGTAAATACGATGTACCGAGCCTGAAGAACAAATGTACGTTGCTGTCGAATAGGTGAAAC
ATACGTATACACATAACCGAAAAGAATTACACGAATATATACGAAACACACGTCCCTGTCGATCTATGCGAGCGCATCTT
CTTACTGCACTCTAGAACAGGCAGTGATTGCCAGATGACGTACGTGCCACACCGGCTTCCATGCGCCTATATAAGCACAT
CACCCGGACACCATCAGCAGCATCAGATAACCAGCCAGCAGCAAACAGCGCAAGTGCGCAACACTAGTAAAGATCGATCG
ATCCACCGAGTAGTAAGGA-----------AGACTAAGAGGAAGAAGAAAGATGGCGGCGGGGGGCGTGTGGGTGTTCAA
GAATGGGGTGATGGAGCTGGAGCAGGAGGCCACGAGCAGGAAGTCGCTGGTGTACGTGCCGGCGAACGAGACGATGCGGT
CGCTGGAGGCGCTGGAGCGGCGGCTGGGGTCGCTGGGGTGGGAGCGCTACTACGAGGACCGCGCCATCGTGCAGCTCCAC
AAGCGCGGCGGCGTCGACCTCATCTCCCTTCCCAGGGACTTCTCTAGGCTCCGCTCCACCCACATGTACGACGTCGTCGT
CAAGAACCGCGACCACTTCAAGGTCGTCGACCTCTAGACATGCATATGCGCGCCTAAACTTCCCCAACTCAACTAGGTAT
ATATCCATACATACATATTATTACCTCCGTCTCAAAATATAAGACG--------------------TTAGAGGCGGGGGT
AGTACAA------ATAAACGCGGTGTGTGTTGACGTGTTTGTGTGATGTAACTGTGTACACGTACCTACGGTTCGTGGAG
ATAT---------ATACTATGTCTATATGATTGTAAGAATATGAAAATATAGCTTTCAAAAAGTATGATGTATCTAGCTT
CCTTTTCCGTGGAATAAAATGAATGAAAGAATATTAAAGCTGTGTGTGTGCGCGTTACTTGCGAGATAGATCAATCGATT
TTTTTTGTAGCATCAGTACAGACACAAGTGCTCATATACACGCGCAAACACTCACCCCTATGAACGCACACACGCACACC
CTACCCCTATGAACACCTCCGAGAGACTGAGCCGGCATATCAACTTGAGATTTACGAAGCCACTGTAGGTGCCTCGTCAT
CGACGGGAACGTCTCCTCCCACTAAAAGCGCATCGCCGGAAATCCTAAAATAAATCCAGGAATAATGCGAGCACCAGGAT
TTGAACCCTGGTGGGTTGGGGATACCACTATCCACCTAACCAACTCAACCACAGGTTGGTTCACTCGATCAATCGATTTG
GCTGTATTAGTTACTGTGGCTACAAGTCACTGTACGTGGCCAGCCTGCATGCATACGTGCATGCACTTGTGTATATCTAG
ACTTTTCGTTGGCCAAGGCAGATGCCTATAAAGGTCTTGGGTATC---------------------------------AC
TCCTTATCCGCCAAATATTCTCTATAAGGGCAGAAAAAGCTCAAATTAAGCCGTACTTGCCAATTGGATGCAGTGTGACG
TTGCCAGCTGAAATAACCTTCTCCATAGAGCTCGGGCTGGGTTGGCCCTAAGGAATTTATGTGGGTGTGTTTGTCCGGTT
CTGACGAGAGCATTTCTCATCTTTTTC-----------------------------------------------------
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-----------------------TTGCACTGTTGTTGCAAATT-TTTCTTTGAGATGTGGTGGTGGGCTGTTCCTTTGCA
GTTAGAAGTATGATGCTCCAGGCTAGGGGGTACGTCCAGAATGTTATAAAGGGTCCGTTGAGAGATGAGTCCATAAAGTG
TGAGTCAGAGATGTGTGATATTCTTGATGGTCAGTGAGCCACGAGTGTCGATGTCTT-AAAAACCTTGTGTTTCGGGTAT
TCTAGATCTTTCAAAGAATGGTAAGCATCACATTTGCCAAGTAGTGCCGTCGAGAAGGAGGTATTGG-------------
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>chr2D_657
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----------------CGGAAGGAG-TACAATGTACCGAGCCTGAAGAACAAATGTGCAACGA--TCGAATAGATGAAAC
ATAGGTATACACATAACCGAAAAGAATTACACGAATATATACGAAACACACGTCCCTGTCGATCTATGCGAGCGCGTCTT
CTTACTGCACTCTAGAACACGCAGTGTTTGCCAGATTACGTAC--GTCACACCGGCTTCCATGCGCCTATATAAACACCT
CACCCACACGCCATCAGCAGCATCAGATAACCAGCCTGCAGCAAGCAGTA--------CAACACTAGCAAAGATCGACCT
ATCGAGAGCAAAGGTAGCTAGCTTCTAAGGAGACTAAGAGTTAGAAGAAAGATGGCGGCGGGAGGCGTGTGGGTGTTCAA
CAACGGGGTGATGGAGCTGGAGCAGGAGGCGACGAGCCGGAAGGCGCTGGTGTACATGCCGGCGAACGAGACGATGAGGT
CGCTGGAGGCGCTGGAGCGGCGGCTGGGGTCGCTGGGGTGGGAGCGCTACTACGAGGACCGCGCCATCGTGCAGCTCCAC
AAGCGCGGCGGTGTCGACCTCATCTCCCTTCCCCGGGACTTCTCCCGGCTCCGCTCCACCCACATGTATGATGTCGTCGT
CAAGAACCGCGACCACTTCAAGGTCGTGGACCTCTAGACGTGCATATGCTCGCCTAAGCTTTCCCAACTAAACTAGGTAT
ATATCCATACATACATATTATTATCTCCGTCTCAAAATATAAGATGTTTATAAAAACGTCTTATATTTTAAGATGAAGGT
AGTACGA------ATAAACGCGGTTTGTGATGATGTGTTTGTGTGATGTTACTGTGTACACGTACCTACGGTTCGTGGAG
ATAT---------ATACTATGTCTATATGATTGTAAGAATATGAAAATGTAGCTTTGAAAAAGTATGATGTATCTAGCTT
CCTTTTCCGTGGAATAAAATGAATGAAAGAATATTAAAGCCGTGTGCGCGCGCGTTACTTGCGAGATAGATCGATCGTCT
TATGTGCAGCAGACGTAGTGCGAGGGTA----------------------------------------------------
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----------------------------------------------------------------T----CGATCGATCTG
GCTGTATTAGTTACTGTGGCTACAAGTCACTGTACGTGGCCAGCCTGCATGCATACGTGCATGCACTTG-GTATATCAAG
ACTTTTCGTTGGCCAAGGCGGATGCCTATAAAGGTCTTGGGTGTC---------------------------------AG
CCCTTATCTGCCAAATATTCTCTGTAGGGGCAGAAAAAGCTCAAATTAAGCCGTACTTGCCAATTGGATGCAGTGTGACG
TTGCCAGCTGAAATAACCTTCTCCATAGAGCTCGGGCTGGGTTGGCCCTAAGGAATTTATGTGGGTGTGTTTGTGCGGTT
CTTACAAAAGCATTTCTCATCTTTTTTGTTTTTGATAAAGGACATTTCATTGAATTGATTTATCAAGGTTATTCAACCGC
ATCTAAAGAATGCCCAGCCTCTACATAACATAATGCACACGGACAACAAGTGCAAACGACTGAAAAATAAACATTGTTTT
GCAGCAAAAATAAATCAATCTAGCCCAGGATGGGGCAAATCCTATACGAAGATTACACCACCATCCATGGAGGGAGAAAA
CCTCCCTGACCCGTACGCTCCAGTTGCACTGTTGTTGCAAATT-TTTCTTTGAGATGTGATGGTGGGCTATTTCTTTGCA
ATCAGAAGTATGATGCTGCATGCTAGGGAGTACGTCCAGAATGTTATAAAGGGTCCGCTGAGAGATGAGTCCATAAAGTG
TGAGTTGGAGATGTG--ATATTCTTGATGGTCAATGAGCCACGAGTGTCTATGTCTTAAAAAACCTTGCGTTTCGGGTAT
TCTAGATCTTTCAAAGAACGGTAAGCAACACAGTCGCCAAGTAGTGCCGTCGAGAAGGAGGTATTGGCTGAGTAGAGGAT
GATGTGG
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------S-----------S------------------S---
-----S------------------S-------------------------------------S-----------------
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---------------------------------------S----------------------------------------
------------------------S-------------------------------------------------------
------------------------------------S-------------------------------------------
------S-------------------------------------------------------S-----------------
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------------S-------------------------S------S--------------------------S-------
S----------------S-SS------S-S--SS----------------------S-----------------------
-------SSSSSS-----------------------S----------------------------S-S------------
----SSSSSSSSS---------S-SSSSS--SSSS-SSS----------------S------------------S-----
-------S-------------------S---------S------------S-----S--------S-S--------S---
----------S-S---------S---------------------------------------------------------
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-S---S--S-S-------------------------------------------------------------------S-
----S---S--S-----------------------------S---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--
-------------S-S----------------------------S--------------------S--------------
------S---------S-------S-------S--------S----------------S--------S---------S--
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---------------------------SS--------S---SSS------S-----------------------------
----------------S----------------------SSSSSS--SSSS------------------S----------
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----------------------S--------------S-------------S---------S-----S------------
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>forward_389
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-------------------------------------------------TGGCCTCTTTTGTTTTCGCG-----------
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>reverse_2150
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---------------------------------------------------------------------CGCCATGCCAC
TCCTTATCT-----------------------------------------------------------------------
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