>input_sequence_84342
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----------------------------------------------ATGGGGATGGGCGGTCGAGGTGTGGTTGGCGACA
GGTGGTCGCAGCGCGTCCTCTGGATGTGCGCCATCGGCAGCGCCGTGAGTAAGCGCCTGAACCAAA-CCCTAAACTATGG
CGCTCCCTTACATTCCGTCTCCGCGTCCTCCTGGTTGTTCCGTGCCGCGATTCGATCTGATGGTTTCCGCTGTGCAGGCC
TGTACTTTGTGGCGGTGGAGAGGCAGGCGCAGAACCGCGCGCGGGCGGTGTCCGAGGGCTTCAAGGGCCTGGACGGCGCA
GGCGGAGGCGGCAGCCGTGGCGGGGAGGACGTGTAA--------------------------------------------
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>chr6D_1_TraesCS6D01G152900
CTTGCCATGCATAGTACTCCCACCATTAATAAATACTTCCTCTGTCTCAAAATGTAGTGTCAAAAAATGTCTTACATTTT
GAGACAAAGGGAGTATATTGCATAATTTTGACTGTCCAACTT-AAGTTTTGACAAACAATAAGCAAATGATATGCATGCT
ACTTGACAAAACATCAATACATTTGCGTTTGTTTTCAATAGTGTTTTCTTTTC---------------------------
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-------------------------------------------------------TAGTTGCAATTTGTAACTGCTAGCA
ATGTATACTTTTCTTGTTTGCGACGACTAGCAATGCATTTGAAAAACAAATTCATGATCAAACTTTAAACTTGACCAGTG
AAAATGTGCTTGTACTTTTGAACAAAGGAGTAAACAAAGTGCAATCTGTATGCTCTAAAAAAGAAGTGACCTAAG-TTTA
TTTTTTTGAGGAAAAAGTAACCTAAGTTTCTCATAGGGAAATAGGTGTTCTTGGCAACGATAAGGCCCAACAAGCCGGGT
AGC--GATCCCTACTTCAAAGCAG--------------------------------------------------------
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--------TCTCATCAGCCGTC-----CCCAACTTTCTGTTGGCACCACTGCCTGCCAAGTGTGCTGGTTGTTGGAGG--
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-----------------------------------------------------------TAAGTATCACCACCAATGAT-
ACAATACTTATCTCCTTTTCAATCCCTCAAAAAAAAGCTTATCTCCTTTTCATTTTTATAATAAGAAGAGATTTTCCCGC
AAAAAAT-AATAAGGCGTTTAAGATCCAAAATCACATGGTTGAAAACTGAAGTAAAACAAAGGTTGAAAAGAGATTATTC
TTTCTAGCAGAGGTTGAGAAGAGATTTTTG---TTGAGCGCTTGAGGTTGAGAAGAAATAAAAAAGGAAAGAAAG-----
----------------AATATGTCAACTTAACTTAGAC----ACACACTCCGCAGCCCGGCCCAACCCAGCTAAAGAACC
AGTCACTACTTTGGTTCTCACCAGGTGGGACCCGCTTGTCGGTCAGTAGACACGAGCGGAGCACCGAGGACTAACCGAGC
GGGCGCGCAGCACATCATCTTCCTCACCGGCGGCGGCGGCGGCGGCATGGGGATGGGCGGTCGAGGTGTGGTTGGCGACA
GGTGGTCGCAGCGCGTCCTCTGGATGTGCGCCATCGGCAGCGCCGTGAGTAAGCGCCTGAACCAAA-CCCTAAACTATGG
CGCTCCCTTACATTCCGTCTCCGCGTCCTCCTGGTTGTTCCGTGCCGCGATTCGATCTGATGGTTTCCGCTGTGCAGGCC
TGTACTTTGTGGCGGTGGAGAGGCAGGCGCAGAACCGCGCGCGGGCGGTGTCCGAGGGCTTCAAGGGCCTGGACGGCGCA
GGCGGAGGCGGCAGCCGTGGCGGGGAGGACGTGTAACTTTGGCGGCGCCGAGGTGAAAGGGCGTGTAGAGATGTGCCTTT
CTGCTCGAAGCCTGAGACAAGTTAGAGTTTTCTTATCTGCTGCTTGTTCACAAGATTCACAGAATCGTTGCAATAATAAT
GTACTGCTAATTGCCCCCTGTGTTGCGGTATGTCAATGCTTGGGGGGCAAGAATTGTTATCTGACGACCTGGATGGTTTT
ATGTGTGAAATATGAGTTGGAAAATTCAGATTATGCTTCGTTTCGTGACTGTTGCTCGTAAGTTTATCGAGCTTGTTGGG
TTGCAACTTAAGAATTAGAACTTAGTCTAAGAAAAACAATGGAGTATATAAGCAAATGAGAAATTTTCGTTTAGGTAATT
CATAGATATAGGCTTGAGTTCCTGTATTTTCCATACTGTGATACTCTGTTCTACATTTATCTAAAATGAGCCACTGTCTT
TTAGGATTTGTGTGTGTGTATTCCTAGGTTGGGAAACCGAAAGGTAAACTAGGAGATGATCAACTTAAAATGAACATAAT
GGCTGCTCAGTGAGCACTAAATTCTTTTCCTGCCTCAGTACCAATACTTGCTGCACCTCGCTACTTGACTACTTTTGATC
CTAATGGGCACTGGGTCACAGACTCTAGTAATACTGATGAGGTCTATCAAATATGGAATAGTCCACCAACCCATCATACG
TTGATTTCCGGCAGTTTTTTCTTCTTCCCTGCTTCTCTTTTACCCTTACTGAATGATAAACTACTGCAAGTAGGGTTTGC
ATGCTTGAATCCTTTTCTGTCTGCATTGTAGAGTTTTAGCAGGG-GTAAAATGGAATAATCCAGTGCCAGTGTATTAGAT
TGTATTAGATTGTCTCTTATTTATCTATAGTTGGTAATCAACATAG--------TGCTGATTGGATTCTTGATTTTTAAG
TTTGGTAACTTTTTTGCCCAGTAGAAGATAAGCAGAAAGCAGCCATAAATGTTTGTTTAAGTGAAAAAATTGACCCCAAT
TCCTG
>chr6B_1
CTTGCCATGCATAGTACTCCCACCATTAATAATTACTTCCTCTGTCTCAAAATGTGGTGTCAAAAAATGTCTTACATTTT
GAGACAATGGGAGTATATTGCATAATTTTGATTGTCCAACTTCAAGTTTTGACAAACAATAAGCAAATGATATGCATGTT
ACTTGACAAAACATCAATAGAATTGCGATTCTATTCGACAATGTTTTCTTTTCTACTCCCTCTGTAA-------------
-----------------------------------------AGAAATATAAGAGCGTTTAGATCACTAAAGTAGTGACCT
AAACGCTCTTATATTTGTTT-------------------------ACGGAGGGAGTAGTTGCCATTTGTAACGGCTAGCA
ATGCATTCTTTTCTTGTTTGCGACGACTAGCAATTAATTTGGAAAACAAATTCATGATCAAACTTTAAACTTGACCAATA
AAAATGTGCTTGTACTTTTGAACAAAGGAGTAAACAAAGTGCAATCTGTATGCTCTAGAAAAGAAGTAACCTAAGTTTTA
TTTTTTTGAGGAAAAAGTAACCTAAGTTTCTCAT-GGGAAGTAGGGGTTCTTGGCAACGATAAGGCCCAACAAGCCGGGT
AGC--TATCCCTACTTCGAACCTAGTCCAATTCCCTGTGACTTCCACCAGCCAACCACACACGCTCCTACAATGCTTCTC
GTTTCCTCCCTGCCCCGCCTCTGTTCTCATCGACCGACGAGCAGCACGCTCGCCGCAGCCCTCCAATCCTGTTACTGGCC
ATATGCGTTCTAATAAGCCGTCCCCAACCCAACTTTCCGTTGGCACCATTGCCTG------------GTTGTTGGAGGTA
AGAGCGAGGCTGATTGGTTTGCTACCGATATTTGGCTAAGCCAACATTTGGCAAAATCAAAACTTGCCAACATTTGGCAA
CCTTTTGTGAGTTTGGCAAAAGAAATTGGCATGCAACCAATCTCTAGCCAATATTTGGCAACAAACCAATTAGGTTGTTT
ACCGCCGGTTTGAGCCGAAATAACAATCGGCGAACCCGAGCCGAACCCAGCCTCCCAGGGGCACCTGGGGGCGCCGGCCG
AAGCGAAAAGGCGCGTGGGCCCGCGCTGTCGACGACACCGGTCGATTTCCCGCAGTTTTCTCCCTCACGCCGCTGCCGCC
AATTCCACCCAGCTGAAGCAGAGGAAGGCGAGGGCGCCGATGGCAAGGCCACCCGGCATGTCAAACGCCAAGTGGAGGGC
GGATGACGGATGTTCAGCGCGGGAGGCGGTTATCACCGACCAACGGAACAGGCTCAACGTCAAGAGGGCTAGGGACACGG
TGGCGGCGGCAGAGCAGGGAGAGGCTTCTCGCGCGGGGATGAACCTTCCACCCGACCACGACACACAAGCCGCGTGGGGG
AGCGAGCAGAGCGTCGCGTCGCCGGCCAACTTCTCGCCGCCCCCGTCGCAATGGGGCTATGCACCCTCGCTTGGCTACTC
CGACGGCGACACACATGGCGGTTTCAAAACCCAACATCACCTTCCCGCACAGGGCACCGCCGCGAGCCTCCCCATCCGGC
TTGAACCCCGACCAGCGCACTCCCTTCCCCGCGTTCACCGTCGGCCTCCACACCCAGTACAACTACTCGCTGACGGCGTA
CTCAGCCTCGCCTACGCTGCCTCTGCGCCGGGGTGCCCTACCCTTCGCACACGGCTCGGCGCCACAGTTCAGCAGCACCG
ACGCCATCGACACCGACATGGACGAGATCATCACGAGCGGTTCGGTCGCCGCCGCTTCCTGTCTGGGTTCCACGCACAAG
ACGAAACGATGGACACCGCTGTCAACATGGACGACGAGCTCGACGATGCCGAGGAGGTGGAGGAGGAAGAACAGGCGGAG
GAGGAGGCGGAGGAGGGGCGGAGACAAATGGCATGTGATCGTCAAGGAGGTCGCGGCTCGCCCGGAAAGCGGCGCCAACG
TCGAGGGTCAGGTATGTCCAGCCGCCGGCTCTGTTCTTTCGCAATGTACGTCGCCGACACTTGTTCTTCGGTCGTGCAGA
TGGTTCGGATGTTCAACATGTATCATCAGGACAACAACGGCCAAGAGTTCAAGTTCCTTCACGTGTTCTCCAGGACCGAG
TCGTGCCAGAAGTGGAGCGAGGCCCAGATCACCCTCGCCAAGGCCAAGGAGACGTACAAACCGGACGCGCCTGCCCCCGG
GGCGGCAGATGGGCGCCCTGATGGCAACAAAAGAGCCAATGCGGCAAGAGACGCGACACCCGCTGCCGAACGACTGCAAT
CATCGATCGAGCAGTGCATCGCCGACGCCAAGAACAACGTTGCAAAGAGGGAGGAGAAATCCGAAGAGCGGTGGTCAGCG
TTGATGATGAAGTAGGGCGCAAAGCTCGACCTTCTCAGGACCAACGTCGCCGCGGTAGACATGTCGACGATGGACGAGCA
GGTCAAGGCTTGGTACTTGACGGAGCACGGCCTCATCTTGAACCAGATGCCCGGGCCGGCGTCGACCACCGCATCTACGC
CCACGCCGACAGCAACGCCGATGCCCAGGCCCGAGAGATGAAGCAGTGCCGATGCCGACCACCAGCCCGAGCACAGAAGC
CACGCGGACGCCGAGTACACCTGCGTCCACGCCTGCCCCGGCCAGTCCCACACCATAGGAGCCCGCGTTTTCATGCATTT
CGTGTCTATGTTTCCTTTGGTGAACTGTGTATGATGATCGCTGAACTTGTGGCGTTTTTTGGGCAGCGGGAAAGACAAGA
TTGATTTTTTGGGTGTCTGGGGGCCGAAACCTGAGGGCGCGGCTGGGAACTCGATCGCCCAGGGCGAAAAATTCGCTGGC
GCAAACGCAAAAACATATTCGCCGGGTGTGCTGCGGGGCCAAATCAAGTGGAGATGCTCTAAGTATCACCACCAATGAT-
ACAATACTTATCTCCTTTTC-------------------------------ATTTTTACAATAAGAAGAGATTTTCCCGC
AAAAAAACAAGACA---TTTAAGATCCAAAATCACATGGTTGAAAACTGAAGTAAAACAAAGGTTGAAAAGAGATTATTC
TTTTTAGCAGAGGTTGAGAAGAGATTTTTTTTTTTGAGCGCCTGAGGTTGAGAAGAGATAAAGAAGGATTTTTTTTTGAG
GAACAGGAAAGAAAGAAGTATGTCAAACTGGGCTTAGCTTAGACACACTCCGCAGCCCGGCCCAACCCAGCTAAAGAACC
AGTCACTACTTTGGTTCTCACCAGGTGGGACCCGCTTGTCGGTCAGTACACACGAGGGGAGCGCCGAGGACTAACCGAGC
AGGCGCGCAGCACAGCATCTGCCTCACCGGCGGCGGCGGCGGCGGCATGGGGATGGGCGGTCGAGGTGTGGTTGGCGACA
GGTGGTCGCAGCGCGTCCTCTGGATGTGCGCCATCGGCAGCGCCGTGAGTAAGCACCTGAACCAAAACCCTAAACTATGG
TGCTCCCTTACATTCCGTCTCCGCGTCCTCGTGGTTGCTCCGTGCCGCGATCTGATCTGATGGTTGCCGCTGCGCAGGCC
TTTACTTCGTGGCGGTGGAGAGGCAGGCGCAGAACCGCGCGCGGGCGGTGTCCGAGGGCTTCAAGGGCCTGGACGGCGGA
GGCGGAGGCGGCAGCCGTGGCGGGGAGGACGTGTGACTTTCGCGGCGCCGAGGTGAAAGGGCGTGTAGAGATGTGCCTTT
CTGCTCGAAGCCTGAGACAAGTTAGAGTTTGCTTATCTGCTGCTTGTTCACAAGATTCACAGAATCGTTGCAATAAGAAT
GTACTGCTAATTGCTCCCTGTGTTGCTGTATGTCAATGTTT-GGGGGCAAGAATTGTTATCTGACGACAT-GATGCTTTT
TTGTGTAAAATGTGAGTTGGAAAATTCAGATTATGCTTCGTTTCATAACTGTGGCTCGTAAGTTTATCGAGCTTGTTGGG
TTGCAACTTAAGAATTAGAACTTAGTCTAA-AAAAACAATGGAGTATATAAGCAAATGCGAAATTTTCGTTTAGGTAATT
CATAGATATAGGCTTGAGTTCCTGTATTTTCCATACTGTGATACTCTGTTTTACATTTCTCTAAAATGAGCCACTGTCTT
TTAGGATTTTTTTGTGTGTATTCCTCGGTTGGGAAACCGAAAGGTAAACTAGGAGATGATCAACTTAAAATGAACATAAT
GGCCGCTCAGTGAGCACTACATTCTTTTCCTGCCTCAGTACCAATACTTGCTGCACCTCACTAATTGACTACTTTTGATC
CTGATGGGCACTGGGTGACAGACTCTAGTAATACTGATGAGGTCTATCAAATATGGAATAGTCCACCAACCCATCATACG
CTGATTTCCGGCAGTTTTTTCTTCTCCCCTGCTTCTCTTTTACCCTTACTGAATGATAAGCTACTGCAAGTAGGGTTTGC
ATGCTTGAATCCTTTTCTGTCTGCATTGTAGAGTTCTAGCAGGGAGTAAAATGGAATAATCCAGTGCCAGTGTATTAGAT
TGT----------CTTTTATTTATCTGTAGTTGGTAATCAACTTAG--------TGCTGATTAGATTCATGATTTTTAAG
TTTGGTAACTTTTTTGCCCCGTAGAAGATAAGCAGAAAACAGCAATAAATGTTTGCTTAAGTG--AAAATTGATCCCAAT
TCCTG
>chr6A_1
CTTGCCATGCATAGTACTCCCACCATTAATAAATACTTCCTCTGTCTCAAAATGCAGTGTCAAAAAACGTCTTACA--TT
GAAACAAAGGGAGTATATTGCATAATTTTGACTGTCCAACTTCAAGTTTTGACAAACA-TAAGCAAATGATATGCATGTT
ACTTCACAAAA-ATCGATACAATAGCGTTTGTATTCAATAGTGTTTTCTTTTCTACTCCCTCCGTTCCTAAATATTTGTC
TTTCTAGACATTTTGAATGACTACTACATACGGATGTATGTAGACATGTTTTAGAGTGTAGATTCACTCATTTTGCTCTG
TATGTAGTCACTTGTTAAAATGCCTAGAAAGACAAGTATTTAGGAACGGAGGAAGTAGTTGCGATTTGTAACTGCTAGCA
CTGCATTCTTTTCTTGTTTGCGACGACTAGCAATGTATTTGAAAAACGAATTCATGATCAAACTTTAAACTTGACCAATA
AAAATGTGCTTGTACTTTTGAACAAAGGAGTAAACAAAGTGCAATCTGTATGCTCTAGAAAAGAAGTAACCTAAGT----
---------------------------TTCTCATAGGGAAATAGGGGTTCTTGGCAACGATAAGGCCCAACAAGCCGGGT
AGCTAGATCCCTACTTCAAAGCAG--------------------------------------------------------
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--------TCTCATCAGCCGTC-----CCCAACTTTCTGTTGGCACCACTGCCTGTTGTTGGGGGTAACC-------G--
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-----------------------------------------------------------TAAGTATCACCACCAATGATT
ACAATACTTATCTCCTTTTC-------------------------------ATTTTTATAATAGGAAGAGACTTTCCTGC
AAAAAAA-AAGACA---TTTAAGATCCAATATCACATGGTTGAAAACAGAAGTAAAACAAAGGTTGAAAAGAGATTATTC
TTTTTAGCAAAGGTTGAGAAGA----TTTTTTTTTGAGCGCCTGAGGTTGAGAAGAAATAAAAAAGGAAAGAAAGAA---
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>chr6A_804
AGGA----------------------------------------------------------------------------
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---------AGAAAGAAATATGTCAACTTAACTTAGAC----ACACACTCCGCAGCCCGGCCCAACCCAGCTAAAGAACC
AGTCACTACTTTGGTTCTCACCAGGTGGGACCCGCTTGTCGGTCAGTAGACACGAGCGGAGC-----------ACCGAGC
AGGCGCGCAGCACATCATCTGTCACAC---CGGCGGCGGCGGCGGCATGGGGATGGGCGGTCGAGGTGTGGTTGGCGACA
GGTGGTCGCAGCGCGTCCTCTGGATGTGCGCCATCGGCAGCGCCGTGAGTAAGCACCTGAACCAAA-CCCTAAACTATGG
CGCTCCCTTACATTCCGTCTCCGCGTCCTCATGGTTGTTCCGTGCCGCGATCCGATCTGATGGTTGCCGCTCTGCAGGCC
TGTACTTCGTGGCGGTGGAGAGGCAGGCGCAGAACCGCGCGCGGGCGGTGTCCGAGGGCTTTAAGGGCCTGGACGGCGCA
GACGGAGGTGGCAGCCGTGGCGGGGAGGACGTGTGACTTTGGCGGCGCCGAGGTGAAAGGGCGTGTAGGCATGTGCCTTT
CTGCTCGAAGCCTGAGACAAGTTAGAGTTTGCTTATCTGCTGCTTGTTCACAAGATTCACAGAATCGTTGCAATAAGAAT
GTACTGCTAATTGCTCCCTGTGTTGCTGTATGTCAATGTTT-GGGGGCAAGAATTGTTATCTGACGACAT-GATGCTTTT
TTGTGTGAAATGTGAGTTGGAAAATTCAGATTATGCTTCATTTCGTAACTGTGGCTCATAAGTTTATCGAGCTTGTTGGG
TTGCAACTTAAGAATTAGAACTTAGTCTAAGAAAAACAATGGAGTATATAAGCAAATGAGAAATTTTCGTTTAGGTAATT
CATAGATATAGGCTCGAGTTCCTGTATTTTCCATACTGTTATACTCTGTTTTACATTTCTCTAAAATGAGCCACTGTCTT
TTAGGATTTTTGTGTGTGTATTCCTCGGTTGGGAAACCAAAAGGTAAACCAGGAGATGATCAACTTAAAATGAACATAAT
GGCCGCTCAGTGAGCACTACATTCTTTTCGTGCCTTAGTACCAATACTTGCTGCACCTCACTAATTGACTACTTTTGATC
CTGATGGGCACTGGGTGACAGACTCTAGTAATACTGATGAGGTCTATCAAATATGGAATAGTCCACCAACCCATCATATG
CTGATTTCTGGCAGTTTTTTCTTCTTCCCTGCTTCTCTTTTACCCTTACTGAATGATAAGCTACTGCAAGTAGGGTTTGC
ATGCTTGAATCCTTTTCTGTCTACATTGTAGAGTTCTAGCAGGGAGTAAAATGGAATAATCCAGTGCCAGTGTATTAGAT
TGT----------CTCTTATTTATCTATAGTTGGTAATCAACTTAGTGCTGAACTGCTGATTAGATTCATGATTTTTAAG
TTTGGTAACTTTTTTGCCCCGTAGAAGATAAGCAGAAAACAGCAATAAATGTTTGCTTAAGTG--AAAATTGATCCCAAT
TCCTG
>SNPs
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------------------------------------------------------------------------------S-
---------------------S----------S-----------------------------------------------
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--------------------------------------------------------------S-----------------
---S--S----------------------------S-----------------------------------------S-S
---------------------------------------------------------S---------S------------
---------------------------------------------S----------------------------------
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-------------------------------------------------------SSSSSS-S-S-S-------------
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--------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------------------------
------S---S-SSSSS---------------------------------------------------------------
---S-------------------------S-----------S--------------------------------------
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--------------------------------------------------------------S-----------------
S-------------------S-----------------------------------------------------------
------------------------------------------------------S-------------------------
------------------------------S--------------------S-------------S--------------
-------S------------------------------------------------------------------------
----------------------------------S---------------------------------------------
------------------------------S---------------------------------------------S---
--------------S-----------S-----------S--S--------------------------S-S----S----
S----------S----------------------------------S-----S---------------------------
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--------------------------------------------------S-------S---------------------
---------S---------------S------------------------------------------------------
---S---------------S---------------------------------------S---S----------------
--S-------------S---------------------------------------------------------------
S----------------------------------------------------------S--------------------
-----------------------------------S--------------------------------------------
---SSSSSSSSSS-----------------------------S-------------------S-----S-----------
-------------------S------------------S----S-----------S-------SS--------S------
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>forward_436
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-----------------TTGCGACGACTAGCAATGC--------------------------------------------
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>reverse_3572
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---------------------------------------------------TCGATCTGATGGTTTCCGCT---------
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>forward_861
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-------------------------------------------CACCACTGCCTGCCAAGT-------------------
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>reverse_3855
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--------------CCCCTGTGTTGCGGTATGT-----------------------------------------------
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