>input_sequence_84333
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-----------------ATGACCGTGAACGGCTTCCAGCAAGGAGAGGGGGGTGGC-GGGCCGGCATCGTGCGACGGCCA
GTACCACAGCGACGAGGAGTACGTGGTGTCGCTGTCTTCGGAGTGGTACGCCGGCGGGGCTCGGTGCGGCAAGACCATCC
GCATCGCCAACTCTGGCAATC------TTAACATAAACGCCATGGTCGTCGACGAGTGCGCCGGCTGCGATAACGAGGTG
GGCGCGTCCATCCATATCTG------------------------------------------------------------
--------------------------------------------------------------------------------
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-------------GCGTAACTTCCGTCTTGACCCCAGTCTTGGCCAGGCGGACATCAAGTGGTCCGACCTTGACACGTCC
CCCTGA--------------------------------------------------------------------------
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---------------------------------------------
>chr5D_1_TraesCS5D01G460300
GATGGTTGTGGAAGATT-TTTTTTGCAATAAGGATGATGTTGCAGAATTTTTTTCAATAAAAA-AGATCAATTTATATAC
GCGCTCGCTACGTGTTGTGGGTTTGTATGTTTGCAATATGGCCTGTATTACAAACTTCTGTTACCAACATGACCAATGTT
GCAAACTTGTTGATCCGTCTCGTGTAGCGCTATGCGCCATAAGATTAAAATCAAATCGGATGGCCACGAAGGTGGCGGAT
ACACGCATAGTCATCAGCCCGTTTTCCCGCTTATATATAGTTTTCTTTGTTGCTTTCCTAAATTCCTCGTGGTTTAGAAC
TCACAACTACCCTTGCTTACAAGTGGACTCACAACCCAACTTGAGACCTCCGATTAGTACGTGAAGGACTAGCTAGGATA
CTGAACGCTTCTACGGAGACTACTAGGATACGGTTTAGTAATCATGGTACGCAAGCTGACTCAATGCTAAACTTTCATAT
CTACTAACACGTCTGGATTACTCTCACAAAAACATGCGCTGCTTTAACGCTTTGCATTTCGGATCCATGAG---------
--------------------------------------------------------------------------------
----------------------------TAGAATCCTACTAGCTCTCTAACTCCACCCAAAATAAT--------------
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---------------------------------------------------ACATCTCCATCTTCCAACGCCATGAGATC
CAAAAACATGCGTGGTTTCAACGATGGAGGAGAACCATTTTGGTCGGGCA------------------------------
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----------------------------CATGGGGAAGAGAGGCGTTACTTTCTGTGAGCTTAGACGAGTA-------GC
ACGAGGACGACCGAGGGCGGCATGGACATGTGTAACTACG------TCCCTCGACTTTGTCTGCA-CGCTGTAACACGAG
CCTATATAAACTC----CTTCACCCAACAGCATTGAGAAGCACAAA------------------TAAGTACTCATAAGCG
CCGCAAGCAGGAAGTCAATAT-CTACGATGGCAAACACTACCAAGCT---CGCAGTGATTTTCGGC---ATCGTT-----
-CTGGTTTTCCTGCAGGTGACGTGCGCCGTCTCCGCGCGCCA------CGCCGCAGGGACGACCAAGTTCGAGCTTCGAC
AGAACGTCCCGGCCGTGATGACCGTGAACGGCTTCCAGCAAGGAGAGGGGGGTGGC-GGGCCGGCATCGTGCGACGGCCA
GTACCACAGCGACGAGGAGTACGTGGTGTCGCTGTCTTCGGAGTGGTACGCCGGCGGGGCTCGGTGCGGCAAGACCATCC
GCATCGCCAACTCTGGCAATC------TTAACATAAACGCCATGGTCGTCGACGAGTGCGCCGGCTGCGATAACGAGGTG
GGCGCGTCCATCCATATCTG------------------------------------------------------------
--------------------------------------------------------------------------------
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-------------GCGTAACTTCCGTCTTGACCCCAGTCTTGGCCAGGCGGACATCAAGTGGTCCGACCTTGACACGTCC
CCCTGAAG-CATGCGTGCATG-------------CATAGTGGTTCCGCTACGTACGGCTGGTGATGGATCGTTA---ATT
ACGCATGGTGAATCGAGTTATTACTTTGCGTTCAACTTTCAGCTTTGAAG------------------------------
---------------------------------------------------------------------TCGATCCCT--
--------------------TGCTGTGTCAACGTCGTT-ACTATG--CCCGG-CCGTCTCCGAGGCAGAGGTAGCTGAAT
AATAATGTGATAAACGTACA-------TGCGTGCTGTATAGGGGTAATCTGCTTATTTTTGTAAGCGT---------TAA
TTTTATAAGTGTGT-TGGTCAGTTTATCATGATCTCAGCTCGCTGTTCCTTATGAGCCGTGCATACCTAGTAGTAACATA
GTTCAACATCCTTGTGTAACAAGCGTGTTATATTGTTGCCTCACAAAAAAAGTGTATTTTGGGGTCAGTTTATGAGTGTA
TTCGGGGTCAGTTTTATTACGATCTCAGCTCGCTGTCCCCTATGATCAGTGCATACCTTGTACTGTGTTGGTTGATTCTT
CAACTCAAGTTTGACTTCAGTTCACTTCCTTAGAGTACCATTTTGAACTTTACGCACCGACCAACTTAACCAAAAGCGAG
AGAGAATGAAAGAAGAATCCTCGTATTATATTATTATAAACAAGAGCCAAACGAGTCATCACGTGCTTTCACGTGGCTAA
ATTTTCAAATACAAAAAACCATATTTATTTTCAGTTCTTTTATTCCTCGTATCTAATTTTGTACCACATGTGCGTCTACA
GCGTGTACAGGAATGACTCAAGTCCAATTCAAAGTACCTACTACTAGCTTAGTTCAAGATAAGCCCGAGATCTGCAGCCG
CCGACAGAGTGCCACAGCCCGCGAAGCCACCGCAAGATACACCGCCAGTGCCAGCAACAGCACCGACTTGGAAGTTGCTC
CCATGCGTCTTCCAACTACACCGACCAGGACAGTGACTATGATGAAGACATCGACATTGTTGCACAAGCCCCAGCCGATG
CAGTTGATCCCAAAGCATTTTCCGGTACTGCCCATCCAAGCCATG
>chr5B_1
GATGGTGGTGTGGAAGGATTTTTTGCAATAAGGATGATGTTGCAGAATTTTTTCAATAAAAAA-TGATCAAGTTATATAC
GCGGTCGCTATGTGTTGTGGGTTTGTATGTTTGCAATATGGCCTGTGTTACACACTTCTGTTACCAACATGACCAATGTT
GCAAACTTGTTAGTCCGTCTCGTGTAGCGCTACGCGGCATAAGATTAAAATCAAATCGGATGGTCATGAAGGTGGCGGAT
ACACGCAGAGTCATCAGCCCGTTTTTCCGCTTATATATTGTTCTCTTTGTTGCTTTCCTAATTTCCTCGTGGTTTAGAAC
TCACAACTACCCCTGCTTACAAGTGGACTCACGACCCAACGTGAGACATCCGATT-------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------AG---------
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----------------------------TAGAATCCTACTAGCTCTCTAACTCCACCCAAAATAATAAAAATGCCTAAAA
TCTAAAAAGCGGCCGGCCACCAACTAACAGAAACGGGCGGCCGGGCTCACATGTGTGATTTTTTTGTCAGCTAGTGGATA
TTATTGTTAGCATTAGATGCGTACAGACTAGTCTGGCAACAGATTCACGCACATTTATTTTAGCGTCTTAAATTTTTAAA
AAGTCATATCTTTTAAACCACATGTCGGAATTCAGATCCGTTTTCACCGTTGGATTCATCGCGGCAAGATCTTCGAAACT
AGATCCCGCATGGATATGTTTCGATGAAATTTTTTTGATGCCAATTTTGGTGCTATATGGTGCAATTAAAATACTGCATT
GTGCAACTTTAGTACTACATCGTGCAATTTTTTTCCAAAACTAATATTTGGAGCTGCGCCTTCGTATGAGGTTATAACCT
AGCAACCACGACAACTTTTGATGTGCGACTAGTCTATTGCCTCGACGAAAGTCGATGTGCAACCTCCTCTTTTAATGTAG
TCTAGTCGCACACACATTTATATTTAGTTGGCTTGTAATGTAGTCTAGTTGCATTGATATTTAGTTGGTTTGTAATGTAG
TCTAGTTGCACACACATTGATGTTTAGTTGGCAGGAAGATTAATTGCACACGTATATGGTTAGTTGGCTTGTAATTTAGT
CTAGTTGCACACACACTGATGTTTAGTTGGCAGGACACTAGTTGCACACACATATGCTCAGTTGGCGTGGCAATTTAGTC
TAGTTGCACACACATTGATGTTTAGTTGGCAGGACTTTTTTGGCACACACACATATGTTCAGTTGGCGCGGCAATCTAGT
CTAGTTGCACACACATTGATGTTTAGTTGGCAGGAAGACTAGTTCGTCGAAACATCCCCATGCGGGATATAGTTTTGAAG
AGCACGTCGCGAGGATTCCAGCGGTGAAAACGGATCTTAATTCCGACGCGCGGTTTGGAAGATATAGCTTTTTGAAAATT
TAAAAACCGAAACAAATGCATATGTGATCTGTTTTTTCCAACTGACTGTGACCGGTGTGAATGTATTAAATGCTAAAAGA
TACATGCGCTAGCGGACAAAAATTACACACATGCATGTCTATTTAGGCCAGCCGCTCGCGCATGTATGGCTGGCCGCTCC
ATCGCGCTAGTGGGCAGCCGGCCGCCCACTAGACGCTCCCATAAAAATGATACATCTCTGTCTTCCAACGCCACGAGATC
CAAAAACATTCGTGGTTTCAACGATGGACGAGAACCATTTTGGTTGGGCACATAGAGTCGTACGTATGTCCACCAAAACT
ACCCGCTAGCCTCCCGGGTCGCTTCCAGCGACTCCGGAGGCGCTGCCGCCGTAGCCCCCGGAGGCCCTCCCTCGCAGCCC
CGTTCACCTTGCCGCCACCGGAGGAGGCCGGCTGCCCGGCGGACGGCGGCGGCGGACTGTCTCCGGCCGGTTTCTTCTGT
TCTTCCCCCCTAGTGGTCGCCTTCCTATTTGGCCGCCGCCGTCGTTGCTGGCTTCCCGGTCTGTTCTGGCCGCTGTCGTC
TCATGTCGTGAGCTTCCCGATCGGTCCATACATGGTGCCTCCGGATCTCCCAGCTACCTTTCCGGCTCCGATCTGGATGA
GGTCCATGGCTGGGAGTTTGATCAGGAGAAGCACGTGGGTCTGGTGCATGAATGCATATACACAAATGCACATGCGTGGA
CATGTATGCAGATGATCGGCGGCTGCAACCCATGGTATTGGCGTCCACCTAGTTGACTACGTCATTGGGGATTGGATTCA
GGACGACGGCGGCCTCACCGCGGATTGTTGTCGCCATCAAAAGATTCTGTCAGAGTTTCATCTCTGCAGATATGGTGGTT
CACTTCGACGGCGAGATGCAAACTATGGACGATGTCTTGATGCAGAGGAATTGTTGTGCAGTGGCGGTGGTCATATCGCT
TGTAGCTGCTGGGATCGTGGAAAAGTGGCGGCGACAATACATGAATGACCTTGATGGTGGTGCTACTTGAGCACCTGGTC
TTGAGCTCCGGGGTGAAAGCCTTGGTCTGCCCCGAGTTGGGTATACCTGACAATGGCGATGTTTTGACGTTGTTACCTTG
TTGAAGGCATTGTTCGGAATGTTCGGACTGATTCTTCAGAGTGAAAACTTAGATTCCAACCTTCGGTGGCTGGATCCGGT
GACGGTGACACTTGAATGTCACTCCCTTCCTTAAGGCGTTGCTGTTGAAGAACCTCGTCGTCCGCGTGGTGTCATGAGAT
TGTCGGTGGAGATATGGTCATTGTTATAGTTTGCCGATCGTGATGTGATCGCTTTGGGGCCTTTTTCTTTTTTCCTCGCC
CACGCATAGCTTTGGTCTTGTATGACTTTGCTATTTGTCGGCGTGTTTTTGTGTGCGTGCGTTGATGTTGGTTGTGTGCA
TCCTAGCTATGCAGAGGCCGGGTGTGTGCTCATTGTGTTTGTATATTTTTGATGCTTCATTTTGAGTCAATAAAATCCAC
CTTTTATCAAAAAAAAATTGGTTGGGCACATGGGGAAGAGAGGCGTTACTTTCTGTGAGCTTAGACGAGTA-------GC
ACGAGGACAACCGAGGGCGGCATGCACATGTGTAAGTACG------TCCCTCGACTTTCTCTGCA-CGCTCTAGCATGAG
CCTATATGAACTC----CTTCAACCAACAGCATTGAGAAACACAAA------------------TAG---CTCATAAGCG
CCGGAAGCAGGAACTCAATAAACTACCATGGCAAACACTACCCAGCTGCTCGCGGTTATTTTCGGTATTATTGTT-----
-CTAGTTTTCCTGCAGGTGTCGTGCAGCGTTTCCGGCCGTCA------CACCGCAGGGACGACAAAGTTTGAACTTGGAC
AGAACGTCCCGGTGGTGATGACGGTGAGCGGCTTCCAGCAAGGAGAGTGAGGTGGC-GGACCGGCGTCGTGCGACGGCCA
GTACCACAGCGACGAGGAGTACGTGGTGTCGCTGTCTTCAAAGTGGTACGCGGGCAGGGCCCGGTGCGGCAAGACCATCC
GCATCGCCAACTCTGGCAATC------ATAACAT----------------------------------------------
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---------------------------------------------
>chr5A_47
-----------------------------------------------TTTTTTTCAATAAAGATTGATCAGGTTATATAC
GTGCTCGCTAAGTGTTGTGGGTTTGTATGTTTGCAATATGGCAT------------------------------------
---------------------GTGTAGCACTACACGCCATAAGATTAAAATCAAATCGGACGGCCAATAAGGTGGCGGAT
ACACGCAGAGTCATCAGCCCCTTTTTCCGCTTATATATAGTTTTCTTCGTTGCTTTCCTAATTTCCTCGTGGTTTAGAAC
TCAAAACTACCCCTGCTTACAAGTGGACTCACGACCCAACGTGTGACCTCCGATT-------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------AGCACGTGAAG
GACTAGCTAGGATACTGAACGTTTCTACGGAGACAACTAGGATACGGTTTAGTACTCATGCTATGCAAGCCGGCTCAATG
CTAAACTTTCATATCAACTTCTTATGTGTAGAATCCTACTAGCTCTCCAACTCCACCCAAAATAATAAAAAACATGCGCT
GCTTTAACGCTT--------------------------------------------------------------------
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----------------TGCATATCTGATCCATGTGTAGAATCCTACTAGCTCTCCAACTCCACCCAAAATAATAAAAATA
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-------------------------------------------------ATACATCTCTATCTTCCAACGCCATGAGATC
CAAAAACATGCGTGATTTCAACGATGGAGGAGAACCATTTTGGTCGGGCACAT---------------------------
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-------------------------------------GAGAGGCGTTGCTTTCTGTGAGCTAAGACGAGT-------CGC
ACGAGGACGATCGAGGGCCGCATGCACATGTGTAAGCACG------TCCCTCGACATTGTCTGCA-CGCTGTAGCACGAG
CCTATATAAACTC----CTTCAACCAACAGCATTGAGAAACACAAA------------------TAG---CTCATAAGCA
CCTCAAGCAGGAAGTTAATAT-CTACGATGGCAAACACTACCAAGCT---CGCAGTGATTTTCGGC---ATGCTT-----
-CTGGTGTTCCTGCAGGTGTCGTGCGCCGTCTTTGCGCGCCA------CGCCGCAGGGACGACGAATTTTAAATTTCGGC
AGAACGTCCCGGCGTCGCTGTCGGTGA-----------------------------------------------------
------------------------------------------GTGGTACGCCGGC-GGGCCCGGTGCGGCAATACCATCC
GCATCGCCAACTCTGGGAATC------ATTACATAAACGCCATGGTCGTCGACTAGTGCGCCGGCTGTGACAACGAGGTG
GGCGCATCCATCCATGGCCCTGTTTGGATCCATGGGTTAGAGTTAGTTTGGGTTAGTTTGGATTCAACTAACCCAAAAGT
ATCCAAACAGGAGGGTTAGTTTGGGTTAGATGCATCTACCCTACCCAAAAAACTAATGCACCCAAGAGGTGTTTATTTGG
GTTAGTTTTTTCGAGACCACTAAAAAACATCTTTTTCTCTCGCTCTTTCCGTAGCAGATCCGTCTTCACTTCCTCGAAGC
TTCTCGTCCTCTCCCTCCCCTCCTCTCGCACCGTTCGTGAAGGCGTCTCGCCGTATTCGTGCTCCACCTAACCCTGCCAT
CCAAATACCTTCTTGATTAAAGTTAGTTCAGGGTTAGTTCAGAGTTAGAATCTAACTCTAATCTCTAACTGAGTTAGAGT
ATCTAAACAGGGCGCGTAACTTCCGTCTTGACCCCAGCCTCGGCCAGGCGGACATCAAGTGGTCCGACCTTGACACGTCT
ACCTGAAG-GAAACATGCCATGCATGCCGTCGGTCAGAGTGGTTCCGCTACT----GCTCGTGACGAAATGATCGTTGTT
GTTCAGGGTGAATCGAGTTATTAATTTGCTTTCAACTTTCAGCTTTGAAG------------------------------
---------------------------------------------------------------------TCGATCGGTAT
ATGAGGGTA-------TGCATGCTGTGTCAGCGTCGTT-ACTATG--CCCGG-CCGTCTCCGATGAAGAGGTAGCT----
-ATAATGTGATAAACGTACA-------TGCGTGCTGTATAGGGGTAATCTGCTTATTTT-GTAAGCGTTAATCGGCGCAA
GCGTACACGTGTGTTTGGTCAGTTTATCAT--------------------------------------------------
--------------------------------------------------------------------------------
--------------------GATCACAGCTCGCTATCCCCTATGAGCAGTGCATACCT----------------------
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>chr5D_644
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---------------------------AGGAGTACCGTTTCGGTCGGGCACTTTA-------------------------
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--------------------------------GGGAAGAGAAGCGTTGCTTTGTGTGTGCTTATTAGACGAGCCACACGC
ACGAGGACGACGGAGGGCGGCATGCACATGTGTAACTACG------TCCCTCGACTTTGTCTGCATCGCTGTAGCACGAG
CCTATATAAACTC----CTTCACCCAGCAGCATTAAGAAACACAAA------------------TAG---CTCATAAGCG
CCGCAAGTAGGAAGTCAATAT-TTACGATGGCAAACACTACCAAGCT---CGCAGTGATTTTCGGC---ATCGTT-----
-CTGG-TTTTCTGCAGGTGCCGTGCGCCGTCTCCGCGCGCCA------CGCCGCAGGGACCA-CAAGTTTGAGCTTTGAC
AGAACGTCCCTGCGGTGATGACGGTGAATGGCTTCCAGCAAGGAGAGGGGGGGCG---------------GGGCCAGCGA
CGACCACAGCGATGAGGAGAACGTGGTGTCGCTGTCTTCAGAGTGGTATGCCGGCGGGGCCC-GTGCGCCAAGGCCATCC
GCATTGCCAACTCTGGCAATC------TTTACATAAACGCCATGATCGTCGACGAGTGCGCCGGCTGCGACAACGAGGTG
GGCACATCCATCCAGATCTG------------------------------------------------------------
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-------------GCGTAACTTCCGTCTAGACCCCAGTCTCGGCCAGGCGGACATCAAGTGGTCGGACCTTGACACGTCT
ACCTGAAA-TATATGTGCATC-------------CAAGGCT----------G----GCTAGTGACGA---GA---TTGTT
GTTCACGGTGAATCGAGTTATC----TGATTTCAAGTTTCAACTTAATTTGAAGTATGTAAAACTGGGCTTTTTATCCTC
TTGATGCTTCATTTTGAGATAATAAAATCCACCATTTATTAAAAAGTGTAAAACTGGGGTATATATGCATGAATCCCT--
--------------------TAATGTATCAGCGTCATT-ACTATTTTCCCGG-CCTTCTCCGAGGAAGAAGTAGCTCAAC
GATAACGTGACAAGCCAACA-------CGCGTGCGGTATATGGGTAATCTGCTTATTTTTGTAAGCGT---------TAA
T-------------------------------------------------------------------------------
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>chr3B_666
ACATC---------------------------------------------------------------------------
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---------------------------------GGGAGAGAGGCGCTGCTTTGTCTGCAGGCTTTCGACGAGATTTTTGG
ACGAG-GCACACGAGGGCGGCATGCACCTCGTGTTGTCGC-----CCCTCG---CTTTGTCTGCA-GGCTGCAGCAGGAG
CCTATATAAACTAGCAGCTCGAACCAACAGACATGAGAAAGCAAAGAGCACAGAGCAGG---GCTAG---CTGATCAACG
CAAGCACGGCCTC----AGTTG---CCATGGCGAGCACGACCAATGC---CGCGGTGATTTTCGGC------GTC-----
-CTAGTTTTTCTGCAGGTGTCGTGCGCCTTTTCCAGGCACCC------CGCGGAAG------GGAAGTTCGAGCTTCGAC
AGAACGTCCCGGCGGTGATGACGGTGAACGGCTTCCAGGAAGGAGAGGGGGGCGGC-GGGCCGGCGTCTTGCGATGGCCA
GTACCACAGCGACGATGAGTTCGTGGTGTCGCTGTCCTCGGAGTGGTACGCAGGCGGGGCACGGTGCGGCAGGACGATCC
GCATAGTCGACACC------TCCAATATCGGCTTAAACGCCAAGGTCGTCGACGAGTGCGCCGGCTGCGACAACGAGGTG
GGCGCCTCGTCCCATATCTG------------------------------------------------------------
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-------------GAAGAGCTTGAATCTTGACACCAGCCAAGGTGAGGTGAACATCAGATGGTCCGACCTGGAC------
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>chr5D_708
TA------------------------------------------------------------------------------
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-------------------------------------------------------------------------------G
ACGAG-ACACACGAGGGCGGCATGCACATCCGTAAGTACG------CCCCG---CTTTGTCTGCA-GGCTGCACTTCGAG
CCTATATAAA-------------------GCCTTGATAAAGCAAAG----CACGCAAGGCAAGCTAG---CTGATAAACC
CAAGCAGCAGCTAGGATCTCAATCACCATGGCAGGCACCACCAAGGT---CGCAGTGGTTTTGGGC---ATTGTT-----
-CTAGTTTTTCTGCAGGTGTTGTGCGCCGTTTCCGGGCGGCCCACTGTCACAGAAG------GCAAGTTTGAACTTCGAC
AGAACGTCCCGGCGACAATGACGGTGAACGGCTTCCAGCAAGGAGAGACGGGCGGC-GGGCCGGCGTCGTGCGACGGTCA
GTTCCACAGCGACGACGACTTCGTGGTGTCGCTCTCGTCGGAGTGGTACGCCAACGGGGCCCGGTGCGGCAAGTTCATCC
GCCTCGCCAACTCAGGCAAC------ATTCACATAAACGCCATGGTCGTCGACGAGTGCGCCGGCTGCGATAACGAGGTC
GGCGCGTCGATCCATATCTG------------------------------------------------------------
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-------------GAAGAACTACAGTCTTGACCCCAGTGTCGGGCAGGTGGACATCAAATGGTCCGAC------------
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>chr3B_712
AC------------------------------------------------------------------------------
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--GAG-ACACACGAGGGCGGCATGCACATGCGTAAGAACGTACGTCCCTCG---CTTTGTCTGCA-GGCTGCCGCAGGAG
CCTATATAAGCT---AGCTCGAACCAACAGCCTTGAGAAAGCAAAGAGCACACGGCAGGCTAGCTAC---CTGATAAACG
AAAGCACCACCAC----ATAT-CTACCATGGCGAGCACCACCAACGC---CGCTGTGATTTCCTGC------GTTGTTCT
AGTAGTTTTCCTGCAGGTGTCATGCGCCGTTTCCAGGCACCC------CGCGGAAA------GTAAGTTCGAGCTTCGAC
AGAACGTCCCGGCGGTGATGACGGTGAACGGCTTCCAGCAGGGAGAGGGGGGCGGC-GGGCCGGCGTCGTGCGACGGCCA
GTTCCACAGCGACGACGAGTTCGTGGTGTCGCTGTCCTCGGAGTGGTACGCCGGCGGGGCACGGTGCGGCAGGTACATCC
GCATCGTCGACTCGTT------CAATATTGGCATAAACGTCAAGGTGGTCGACGAGTGCGCCGGCTGCGACAACGAGGTG
GGCGCCTCATCCCATATCTG------------------------------------------------------------
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-------------G------------------------------------------------------------------
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>chr3B_877
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-----------------------------------CACTACCAATGC---CGCGGTAATTTCCTGC---ATTGTT-----
-GTAGTTTTCCTTCAGGTGTCGTGCACCGTTTCCCAACACCC------CACGGAAG------CGAAGTTCGAGCTTCAAC
AGAACGTCCCCGCCGTGATGACGGTGAACGGCTTCCAGCAAGGAGAGGGGGGCGGC-GGGCCGGCGGCATGCGACGGCCA
GTACCACAGCGACGATGACTTGGTGGTGTCGCTGTCCTCGGAGTGGTACGCTGGCGGCGCCCGGTGCGGCAGGATAATCC
GCATCGCCGACCCTTCCAATTCCAATTTTGGCACAAACGCCATGGTCGTCGACGAGTGCGCCGCCTGCGACAACGAGGTC
GGCGCGTCGTCAGGTATCTG------------------------------------------------------------
--------------------------------------------------------------------------------
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-------------GAATAACTTCGATCTTGGCACCAGCCTCGGCCAGGTGGACACCACATGGTCGGATGTGGACTTCTGA
ACTGCA---GAAACATGA-ATGGATGCTGTCAGT--CGATCGTTCAGCTCCC----GCTGATGATGATGAGTTC---GTT
GTTCACGGTGGATCGAGTTATT----TGCTTTTAAGTTTCAGTTT-----GAAGTTTGTACCTGAG--------------
--------------------------------------------------------------ATATGCATAAATCCCT--
--------------------TAATGTGTCAGCGTTGTTTACTATTTGCCCGACCTATCTAAGAGGCAGAAGTAGCTGAAT
AATAATGTGATAAACTACGTGCTTGTTTGCATGGTGTATGTGGGTAATCTACTTATTT--GTAACCATTAAGCGCTGTAA
GTTTGTAAGTGTGT-AACTCAGATTAACGT--------------------------------------------------
--------------------------------------------------------------------------------
--------------------GATCTCAGCTCATTATCCCCTTTGAGCACTGCATACCTAG--------------------
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>chr3D_893
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------------------------------------------------------GTGATTTTCTGC------ATTGTTCT
AGTAGTTTTCCTGCAGGTGTCGTGCACCGTTTCCCAACGCCC------CACGGAAG------CGAAGTTCGAGCTTCAAC
AGAACGTCCCAGCGGCGATGACGGTGAACGGATTCCAGCAAGGAGAGGGGGGTGGC-GGGCCGGCGGCGTGCGACGGCCA
GTACCACAGCGACGATGACTTGGTGGTGTCGCTGTCCTCGGAGTGGTATGCTGGCGGCGCCCGGTGCGGCAGGATAATCC
GCATCGCCGACCCTTCCAATTCCAATTTTGGCACAAACGCCATGGTCGTCGACGAGTGCGCCGGCTGCGACAACGAGGTC
GGCGCGTCGTCAGGTATCTG------------------------------------------------------------
--------------------------------------------------------------------------------
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-------------GAAGAACTTCGATCTTGACACCAGCCTCGGCCAGGTGGACACCACATGGTCGGACGTGGACTTCTAA
ACTGCA---GAAACATGA-ATGGATGCTGCCGGT--CGATCGTTCAGCTCCC----GCTGGTGATGATGAGTTC---GTT
GTTCACGGTGGATCGAGTTATT----TGCTTTCAAGTTTCAGTTTGC-----AGTTTGTACCTGAG--------------
--------------------------------------------------------------ATATGCATAAATCCCT--
--------------------TAATGTGTCAGCGTTGTTTACTATTTGCCCGACCTGTCTAAGAGGCAGAAGTAGCTGAAT
AATAATGTGATAAACTACGTGCTTGTGTGCATGGTGTATGTGGGTAATCTACTTACTT--GTAACCATTAAGCACTCTAA
GTTTGTAAGTGTGT-AACTCAGATTAACGT--------------------------------------------------
--------------------------------------------------------------------------------
--------------------GATCTCAGCTCGTTATCCCCTTTGAGCACTGCATACCTAG--------------------
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>chr5B_998
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--------------GTGATGATGGTGAACGGCTTCCAGCAAGGAGAGGGGGGCAGCGGGGCCGGCGTCGTGCAACGGCCA
GTACCACAGCGACGAGGAGTACGTGTTGTCGCTGTCTTCAGAATGGTACGCCGGCGGGGACCGGTGCGGCAAGACCATCC
GCATCGCCAACTCTGGCAATC------TTCACATAAACGCCATGGTCGTCGACGAGTGCGCCGGCTGCGACAACGAGGTG
GGCGCATCCATCCATATCTG------------------------------------------------------------
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-------------GCGTAACTTCGGTCTTGACCCCAGCCTCGGCCAGGCGGACATCAAGTGGTCCGACCTTAACACGTCT
ACCTGAAG-AAAACATGCCATGCGTAC---CATT--GAGTGGTTCCGCTACG----GCCGGTGACCA---GATCGTTGTT
GTTCCGGGTGAATCGAGTTATTAATTTGCTTTCAACTTTCAGCTTTGAAA------------------------------
---------------------------------------------------------------------TCGATCGGTAT
ATGGGGGTA-------TGCATGCTGTGTCAGCATCGTT-ACTATG--CCCGG-CCGTCTCCGAGGCAGAGGTAGCTG---
--TAATGTGACAAACGTACA-------TGCGTGCTGTATAGGGGTAATCTGCTTATTTT-GTAAGCGTTAATTGGCGCAA
GTGTACAACTGTGTTTGGTCAGTTTATCAT--------------------------------------------------
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--------------------GATCACAGCTCGCTATCCCCTATGAGCAGTGCATACCT----------------------
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>chr5D_1065
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--ACCACAGCGACGAGGAGTACGTGGTGTCGCTCTCTTCGGAGTGGTACGCCGGCGGGGCCCGGTGCGGCAAGACCATCC
GCATCGCCAACTCTGGCAATC------TTTACATAAACGCCATGGTCGTCGACGAGTGCGCCGGCTGTGACAACGAGGTG
GGCGCGTCCATCCATATCTG------------------------------------------------------------
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-------------GCGTAACTTCCGTCTTGACCCCAGCCTCGGCCAGGCCGACATCAAGTGGTCCGACCTTGACACGTCT
ACCTGAAAGGAAACACGG-ATGCACGCCGTC-----GAGTGGTTCCGCTACG----GCCGGTGACCA---GATCGTTGTT
GTTCAGTGTGAATCGAGTTATTAATTTGCTTTCAACTTTCCGCTTTGAAG------------------------------
---------------------------------------------------------------------TCGATCGGTAT
ATGGGGGTATCAGGTATGCATGCTGTGTCAGCGTCGTT-ACTATG--CCCGG-CCGTCTCCGAGGCAGAGGTAGCTG---
--TAATGTGATAAACGTACA-------TGCGTTCTGTATAAGGGTAGTCTGCTTATTTT-ATAAGCGTTAATCGGCGCAA
GTGTACAAGTGTGTTTGGTCAGTTTATCAT--------------------------------------------------
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--------------------GATCACAGCTCGCTATCCCCTATGAGCAGTGCATACCT----------------------
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>SNPs
------S---SSSS-SS-----------------------------------------------S------S--------
----------S-----------------------------------S-----S---------------------------
-----------SS-------------------S---------------------------------S-------------
-------S-----------------S-----------------------------------S------------------
------------S-------------------S-------S--------------SSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------
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----------------------------------------------------------S---------------------
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------------------------S------------------------------------------------S------
---------------------------------------S--------------------------SSSS----------
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-------------------S------------------------------------------------------------
----------------------S------------------------------------------S--------------
------------------------------------------------------------S-------------------
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----------------------------------------S--------------------------------------S
S--------S--S-------S---------------S---------------SSSS----------S-SS---S---S--
SSS--S-----------------S-----S--------------------------------------------------
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------------------------------S-------------------------------------------------
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------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSS--------------S----------S------------S-SSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_523
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-----------------------TCACAAAAACATGCGCTGCT-------------------------------------
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>reverse_5085
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--------------------------------------------AGCCAAACGAGTCATCACGT----------------
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---------------------------------------------
