>input_sequence_84328
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---------------------------------------------ATGGCCTGTATCAGAGATGGG-TTGGGTGGAATAT
TGAAGATGCCGGTGCTCGTCAAATTGGACCTGCGAATGAGCCTCTGGGTTATGAGGAAGGTGAAGGTTAGGCCTCGCGTA
ATAGCTATTGATGATGACAGGAATGTTTTCTTTACTGCGGAGGATTCCCATAAGATATTCGGGGTCCCGTGCGGCAACCA
AGATGTTCGTGTCAGGGATACAAACATTGCTCCTTCGGCGTTCAAGTTCATAAAGCAGGCAATTGGGATGGACAA-CTCA
GCATCGAACTACC-----------------TTCATCAGCAAAGACATTTATGA---------------------------
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>chr4A_1_TraesCS4A01G461100
TTGTATGTGGAATTTCACTGGCGTGGACGAGCTCGCCTGCACACGGTATCGCGAGGCGTCCAATCTTTGCGGATGCGGAA
CAAACACAGTATTTCAGGGTGTGTACAGCGAGCATTTAATGCGTATGCTGGACAGAAGCGCCTAAAGCTGTTACGATGAG
CGGAGACGGAAGTGCAAAGGCGCGATGCCGGCGTGAGACGGGATGGGGGCAGCCCACCAACCGCATTTAACGGCAAGCCT
ACTCTGACCACCTCGCATCTCATCCTCCACCATCAGCCCCGCCGGCGCAAATCGAGTCAGCCGTGGAGCAAGGCGGCCAA
GCTGTGTGGGAGCTCAAGGTCCGCAGCCGGCACACGCATGGCAGGGGCAGCACAATGGAGCGCCCGAGGCGACCCAGTTC
GCATCTTCCGGGAGCGCTGCCACAAGATTCATGATCGC--CGCCGCTAGTTGCAGTGCGCCAGGGAACTATTGCTGTCGA
TGCTTCCATAAATCTGGTGTTATCCGTCTCTAGTCTCGTGATCCGGGTGGCCATTCTTGTGCTGGTTGTGGTCGATGTTG
TCATGCGTGTGCTGGATTAGGTGACAGTAGCGATCTGGATTATTATGTAGGCACTCAAGTGAGCTCGCGTTCCAGCAGAT
AGGGCTCAAAACAGAGCTCCTCCATCCCTGGTGCGTCCACAGGCTGTCATCGCTGGTACGTACTCCAACCTCGTCA-GTG
TAAAATCTCTGCATCAGTATCTACGGGTCAAGTTGTTTAGGAAGTACGTACTCTACTTAGCAGTCAGCTCTGCAGTTTAG
TTATCTTTTCGTCTCTTGTGTCTTTTTAGATGGATGATGAGGGTGAGAATCAAGAGTT-TCATGCGGGGGGCAGTCCGAA
AATCAAGAAAGCCGCTGTGCTGGGCAGCCGGTGG-TGGTTTGTCAGAGATTGAGCCGGCAATCACGTCTCGGCTATCAGT
GAAGCGTGTGGTCGAGGTTGTGCAAAAGTTTGATGAGTATAAGAGATGGCCTGTATCAGAGATGGG-TTGGGTGGAATAT
TGAAGATGCCGGTGCTCGTCAAATTGGACCTGCGAATGAGCCTCTGGGTTATGAGGAAGGTGAAGGTTAGGCCTCGCGTA
ATAGCTATTGATGATGACAGGAATGTTTTCTTTACTGCGGAGGATTCCCATAAGATATTCGGGGTCCCGTGCGGCAACCA
AGATGTTCGTGTCAGGGATACAAACATTGCTCCTTCGGCGTTCAAGTTCATAAAGCAGGCAATTGGGATGGACAA-CTCA
GCATCGAACTACC-----------------TTCATCAGCAAAGACATTTATGAGGAATCTAGTAAGATCAAGAAGGGTTG
TTTTCAGATTGCGCTTGTGATTTTCGTCATGGGTTACATGCTAGCACTGTGCACAGAGCATGACTTCATGATGATTGATT
TCGGGGGTGTCGTGACTAATGCGGAAATCGTAACTCAATTCAATTGGTGTGAGTATGCTATTCTAAATTTGATGGTAGCG
GTCATGAAAAATTGAAAATGCAGAGTGATTTTCAGAACAATGTACCAACGATTCATCTATCTGGATGCCACCTTTTCTTC
CAGGTACATCAAGTGAATTTTGTTTGGAAGTGTCCTTCTGA-ATTCACTGCTTTTCTTTGGGG------TA---TGTTGT
TGAACTGAAAACTTTTGTGTTTTCCATCTTTTTGTGTGCAGATTCTCTTGACGGACAACATTGATCTTGGGATTTTCAAT
ACAATCCACTCAGTATTACCTTGCGTGCAGTGCTTCGAACAGAAAACACTTCGGCAAATGATCACAATGGCGTATAGTAC
GAAGCAGGGCATGCCGAGTTATGTGCCAGCAGCGGTAAAGGCGGTCATGCGTTATGTGGCAGCGTACACTTGTTCAGGTC
ACACCAAAACTCGAGATTGTTGTGTGTGCTGTAAGCACCGACTTGAATTATACTCCCTCCGTTCCAAATTACTCGTCATG
GTTTTAGTTCAAGAACTAAAACCACGACGAGTAATTTGGAACGGAGGGTGAACTAAAACCACGACGAGTAATTTGGAACG
GATGGAGTAGGTACGACCTCCAGATTCACTGTGCTATTACTTGGTATCCGTGAACAAGATAGTCAACACACTGATGGTGA
TGTAATGGCATCTTCATCCAAGCCAGTATCTTCAAGTGCACCTGCGACAGCGTGCGAGCATACACCGGATTTGCATGTCA
ATACGAGGGTGCCACCGTCAGGCTCGCTGGGGGACCCCATGTCCGCACATTGTTCGATAGGCCGAGT----TTCGCCAAT
CATCTTCGCCATGCTTGCGAGGGCGAT
>chr6D_189
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----------------------------CGGCTGAAGACGGGATGGGGACGG-CCACCAACCGCATTTAGCAGCAAGCCC
G--CTGACCACCTCGCATCTCATCCTCCACCCGCATCCCCGCCGGAGAAAATCGAGCCAGCCGTGGAGCAAGGCGGCCAA
GCTGTG--GGAGCTCAAGGTCCGCAGCCGGCACACGCATGGCAGGGGCAGCACAATGGAGTGCCGGAGGCGACCCAGTTC
GCATCTTCCGGGAGTGCTGCCACAGGATTCATGGTCGTCGCGCCGCTAGTTGCAGTGCGCCGCTTCA-------------
----TCCATAAATCTGGTGTTATCTGTTGCTAGTCTTGTAATCAGGGTGTCCATTCTTATGCTGGTTGTGGCAGATGTTG
TCATGCGTGTGCTGGATTAGGTGTCAGCAGCGATCTGG-TTATTATGTAGGCACTCAAGTGAGCTCGCGTTCCGGCAGAT
AGGGCTAAAAACAGAGCTCCTCCATCCTTGGTGCCTCCACAGGCTGTCATCGCTAGTAAGTACTCCAACCTCATTAGGTG
TAAAATCTCTGCATTAGTATCTAGGGGTTATGTTGTTTAGGAAGTA-------TACTTAGCAGTCAGATCTGCAATCTAG
TGATCTTTTCGTCTCTTGTGTCTTTTTAGATGGATGATGAGGGCGAGCATCAAGAGTTGTCATGCCGGGGGCAGTCCGAA
AATCAAGAGAGCCCCTGTGCTGGGCAGCCGGTGGATGGTTTATCAGAGATTGAGCCGGCAATCATGTCTCGGTTGTCAGT
GAAGCGTGTGCTCAAGGCTGTGCAAAAGTTTGACGAGTATAAGAGATGGCTTGTATCAGAGATTGGGTTGGGTGGAATAC
TGAAGCTTCCGATGCTCGTCAAATTGGACCT---------------GGTTATGAGGAAGGTGAAGGTCAGGCCTCGCGTA
ATCGCTATTGATGACAACAGGAATATTTTCTTTACTGCAGAGGATTTCCATAAGATCTTCGGGGTCCCGTGCGCCAACCG
AGATGTTCATGGCAGGGATGCGAACATTGCTCCTTCATCGATCCAATTCATAAAGCAGGCAATTGGGATGGACAAACTCA
GGATCGAAGAACCTAAAGGAGGCTGAGAGATTCATCAGCAGAGACATTTCTGAGGAATCTAGTAAGATTGAGAAGGATTG
TTTTCAGTTTGCGCTTGTGATTTTCATCATGGGTTACATGCTAGAGCTGTGAACAAAGCATGACTTCATGACAATTGATT
TCTGGGGTGTAGTGGCTAATCCGGAAGTCATAACTCGATTCAATTAGTATGAGTATGCTATTCAGAATTTGATGGTAGCG
GTAATGAAGG--------TGAAGAGTGATTTTCAGAACAATGTACCAACGATTCATCTATCTGGATGCCACCTTTTCTTC
CAGGTACATCAAGTGAATTTTGTTTGGAAGTGTCCTGGATTCA----CTGCTTTTCTAGGGGGGGGGGGTATGCTGTTGC
TGAACTGAAAACTTTTGTGTTTTCCATTGC--TGTATGCAGATTTTCTTGTTGGACAACATTGATCTTGGGATTTTCAAT
ACGATC----------TACCTCGTGTGCAGTGCTTCGAACAGAAAACACTTCGGCAAATGATCACAATGGCGGATAGTAT
GTAGTAGGGCATGCCGAGTTATTTGCCAGCAGCCGTAAAG-CGGTCATTTGCTAAGTGGCAGCATACACTTGTTGAGGCC
ACACCAAAACTCTAGATTGTTGTGTGTTCTATAAGCACCGACTTGGATTGTCCGTATTTTGTAT----------------
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------GTAGGTACGACCGCCAGATTCAGCGTGCTATTACCGGGTAGCCGTGACGAGACAGTCAT--ACACTGATGGTGA
TGTAATGGCATCTTCATCCGAGCCAGTATCTTCAAGGGCGCCTGCGACAGCATGCGAGCATACACCGGATTTGCATGTCA
ATATGAGGGTGCCACCGTCAGGCTCGCTGGGGGACCCCATGTCGGCACATCGTTCGATGGTGCCAAGTGAGTTCGGCAAT
CATCTTCGCCAGGCTTGCGTGGG----
>chr1D_1137
ATG-----------------------------------------------------------------------------
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------------------------ATTTTCTTTACTGCAGAGGATTTCCATAAGATATTCGGGGTCCCGTGCGGCAGCCA
AGATGTTCGTGGCAGGGATACGAACATTGCTCCTTCGGCGTTCAAGTTCATACAGCAGGCAATTGGGATGGACAA-CTCA
GCATCGAACGACC-----------------TTCATCAGCAGAGACATTTATGAGGAATCTAGTAAGATCAAGAAGGGTTG
TTTTCAGATTGCGCTTGTGATTTTTGTCATAGGTTACATGCTAGCACTATGCACAGAGCACGACTTCATGACGATTGATT
TCAGCGGTGCTGTGACTAATCCGGAAGTCATAACTCAATTCAATTGGTGTGAGTACGCTATTCAGAATTTGATGGCAGCG
GTCATGAA--------AATGCAGAGTGATTTTCAGAACAATGTACCAACGACTCATCTATCTAGATGCCACCTTTTCTTC
CAGGTACATCAAGTGAATTTTGTTTGGAAGTGTCCTTCTGA-A----CTGCTTTTCTAGGGGG------TATGTTGTTGT
TGAACTGAAAACTTTTGCGTTTTCCATCTCTATGTGTGCAGATTTTCTTGTTGGACAACATTAATCTTGGGATTTTCAAT
ACAATCCACTCCGTATTACCTTGCGTGCAGTGCTTCAAACAGAAAACACTTCGGCAAATGATCACAATGGCGTATAGTAC
GCAACAGGGCATGCCGAGTTATGCGCCAGCAGCGGTAAGG-CGGTCATGCGCTATGTGGCAGCATACACTTGTCGAGGCC
ACACCAAAACTCGAGATTGTTATGTGTGCTATAAGCACCGACTTGAATT-------------------------------
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>SNPs
S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSS----SSS-------------S-S-S----------------S-S-------S
SSS----------------------------SS--S---------S-S--------S-----------------------
------SS----------------------------------------------------S---S---------------
--------------S---------S--------S---S-----------------------SSSSS-SSSSSSSSSSSSS
SSSS--------------------S--SS-------S--S---S-----S--------S------------SS-------
-----------------------S---S----------S----------------------------------S------
------S--------------------S------S-------------------S---S-------------S-S-----
--------------S--------S----S-S---------------SSSSSSS--------------S------S-S---
-S-----------------------------------------S---S-----------------S--------------
--------S----S---------------------------S----------------------S-------S-S-----
----------S--S---S---------------S----------------S------------S---------------S
-----S-S---S-------------------SSSSSSSSSSSSSSS---------------------S------------
--S-----------SS--------S-------------S-------S---------------------------------
-----------S---------S----------------------------------------------------------
---------S------------------------------S---------------------------------------
-----------------------------------------------------------------------S--------
--S-------S---------S-----S--S---------------------------------SS---------------
--------SSSSSSSS----------------------------------------------------------------
-------------------------------------------SSSS----------SS---------------------
-----------------------------S-S------------S-----SS----------------------------
-----------S--------------------------------------------------------------------
-S--------------------------------------S----------S-----------S----------S---S-
------------------------------S------------------S-S-SSSS-SS--SSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSS------------S---------SS----------SS----S------SS-SSSSSSSSSSS-------------
-------------------S----------------S--S-----------S----------------------------
---S---------------------------------------S------S-------S-SS-S-SS--------S----
-----------S-------S---SSSS
>forward_151
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---------------------------------------------------ACAGAAGCGCCTAAAGCTGT---------
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>reverse_1072
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-------------------------------GCGAATGAGCCTCTGGGTTA-----------------------------
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>forward_166
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------------------------------------------------------------------GCTGTTACGATGAG
CGGAGA--------------------------------------------------------------------------
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>reverse_1443
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--GGGGGTGTCGTGACTAATGC----------------------------------------------------------
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