>input_sequence_84327
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------ATGGGGATCTTCGCCTGCGTGACTGCGTCAAGCG
CATGGCCGCCGCCGGAGCTGAGCTTCCTAACACTAGTGAACGCCGTGCTTCCTCGATTCTTGCTGCTGATGCCGCTGCGT
GGCCAAAGTCCCAACTCCGAAAATAACTTGACGCGGTGGCGACAGGCCGGATTGCGTTCACGGTGGTCCTCGAAGATGTT
GGTAGCCTTGCGCAGCGCGAAGCTCTGGCAGGCGTTCTACACCTGCTCCTATCCCTGCACGGCGACGCACACCTCCAATG
GGTCAACAGTCTGTCGCGCCGATCGCTGCCTCTGA---------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------
>chr4A_1_TraesCS4A01G362900
TCCTGTTTGTTTCTCGGAATAATGTATTTCCGTTCATTTGCAATAGAAAGGGATCATGCCCGGTTTGAAAAAAAAAGTGT
ATCGTTGTACAGGGTGCCAGGGCTT-GCTGCCGACATGCATGGTGCCCACAGCGCGGAGTGCTGCTTCTGCGGCGTCTGT
GGTGTACTGCCGGGCAGACGCTGCGGGGCCCTGCCTGCCGTGCGACGGCCACGTCCATGGCGCCAACATGCTCTCCTGCT
GCCGAAGCCACGCA-CCCCGCTCTGGGACGCCTGCCGCACCATCGCCACTCATGACCCCTCCTTCCGCAGCGGCACCGCC
CGGTTTCTCCGGTCGAATTGCGGCTATGAAGAGCAGCAGGATTGGAGGCTGTTGCAGGCGCCGTCGCTGCACCACCGTTT
CACGGTGGAGGGCTACACCGGGTGCCTCTCTCGGCAGGAGAGCTCGCGGCGATCCTCGGTGTAGTCGGCTGACTCGGCTG
TCGGCAACAAAACGGCTAGCAGGCCGGCCTCGAGTGCAACCGGCGCTGCTCGCCATTGAAGGCCGCGGGTGCGCGGACAC
GGCGCCGCCATCCTCGTCGGG----AGAAAGAAGGAAGGGGCGCAGCGTGGACAACCACCGCCAAGCAGAACATAAGTGC
CTCTACGTCCCCGCCAGGTTGTGCAGATGCACCACCCCAAAGTGGGTTCTCCGTAGTAGAGCACGTTGCCGGCGAGCTGC
TCGGCCTGCAAGCATCAAGCCTATACACCACACATGCAGCAGCAGCATCACGCCAGCCGCGCAGACACGCAAAGCAGCAC
CAGGACGCGTCAGGCCAGAGACATGAACGTAACGCAGAGAGAAGAAGTAGACTACTGTCGTGCAGTTCACCTGGAGGCGG
AGCAAGAGGAGCCCAGGCATATCCCCATTTGGCGAAGGCGTGTTCCGCGGGAGCGCTGGACTCCAGTGCGTGCTTCTGCT
TGGACGCAAGCGGCGACCGCACGGACACACCGTTGCCGGTCCAACGATGGGGATCTTCGCCTGCGTGACTGCGTCAAGCG
CATGGCCGCCGCCGGAGCTGAGCTTCCTAACACTAGTGAACGCCGTGCTTCCTCGATTCTTGCTGCTGATGCCGCTGCGT
GGCCAAAGTCCCAACTCCGAAAATAACTTGACGCGGTGGCGACAGGCCGGATTGCGTTCACGGTGGTCCTCGAAGATGTT
GGTAGCCTTGCGCAGCGCGAAGCTCTGGCAGGCGTTCTACACCTGCTCCTATCCCTGCACGGCGACGCACACCTCCAATG
GGTCAACAGTCTGTCGCGCCGATCGCTGCCTCTGAATCGATTTCCACCAACATCAGCTAATTGGCGGCACCGGAGAAGGC
CAGGATGGAGGGCCGGTCGGCCGGGCCGGGGCCTAGAGGTGATCTACAGCGAGGCGCGATGGCGAAGTGGGATGTTGGCG
TCACCGGAATTTTGCAGACAGATGCAGCAACGTGTGGGTGGGCTAGAGGCGAGGAGAAAAATGGCAACGGAGAAAGCGAG
CCATGCGGCGATGAGATTCTGGGGTAGCGGAGGAAGAGGCAGCGTTGCGGTGGGAGGAAGCGGGCCGCGACTCATCTCTT
TTTATATGCATCTATGGCGGTGGTGGAGCCGTATGGATTTGACTCGACACTTCCAAACCCAAGCATGAAAAGATCAATAT
GTTCACGTAACAATCACTTAAAATATCAGCATACGCTAGAACTTACCATGAGCGGCGGCGATCTGTATATGCATGCAGGC
AGCCGACTCAATCTAGGAAATCCACGCCCAACCAGCACATGCATGTGCCAGAGACAAAATTGGAAACCACCACCCCATGC
CGCAGAACACAACACATTGACCAGAAAAAACAAATCTAGAAACAAATTACTGAATGCACCCCGAAGCGTACCCTGTCAAA
TCCCCCAGTAAATAAGGTGGCAGCACCCCATTGGTCCGGTTTTCACTGATAGAAAAAATTCAAAAAAACCTGGTAAACTA
AACCTGGCCAGGTTTAGTATATGTATAATTATGATTTTGTCCATACAAATTGTAAAAGCGTATTAGGGAGAGATTTGTAT
TATTTTCTGTATTTTGAAACTAGAACATTGATTTCTTGTGATAATGGTTATTCTTATTTCACTTTTTCGCTTTTACTTAC
CAATGGATATTTTGTCTACACCGTACCTATAGCTTTCCTTAGTACCAAAAGTCAATAATCACATTTACATAATTTTTATT
TGCATTCTACTTGGAACAGAGGAAAATGCCCTTATGGAGCTTTTGAGATTTATGTAACTGTGGAAAGTTAACAAC
>chr6B_75
--------------------------------------------------------------------------AAGTGT
GTAGTTGTACAGGGTGCCAGGGCTTTGCTGCCGACATGCATGGTGCCCACAGCGCGGAGTGCTGCTTGTGCGGCGTCCGT
GGTGTACTGCCGGGCAGACGCTGCGGGGCCCTGCCAGCCGTGCGACGGCCACGTCCATGGCGCCAACATGCTCTCCTGCT
GCCGAAGCCACGCCTCCCCGCTCTGGGTCGCCTGCTGCATCGTCGCGACTCACGACCTCTCCTTCTGCAGTGGCACCGCT
CGGTTTCTCTGGTTGAATTGCGACTATGAAGAGCAGCATCATTGGAGGCTGTTGCAGGCGGCGTCGCTACAGGCCTACC-
-----------GCTACACTGGGTGCC--TCTCGGCAGGAGAGCTCGCGGCGATCCTCGGCGTAGTCGGCTG---------
TCGGCGACAAAACGGCTAGCAGGCCGGCCTCAAGTGCAACAGGCGCTGCTCGCGACTGAAGGCCGCGGGCGCGCGGACAC
GACGCTGCCATCCTCGTCGGG----AGAAAGAAAGAAGGGGCGCAGCGTGGACAACCACCGCCAAGCAGAACATGAGTGC
CTCTACGTTTCTGCCCGGTTGTGCAGATGCACCACTCCAAAGTGGTTTCTCGGTAGTAGGGTACGTCGCCGGCGTGCTGC
TCGGCCTGCAAGCATCAAGCCTATACACCACACATGCAGCAGCAGCATCATGCCAGCCGCGCAGACACGCAAAGCAGCAC
CAGGACGCGTCAGGCCA---------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------
>chr2A_75
--------------------------------------------------------------------------AAGTGT
ATCGTTGTACAGGGTGCCAGGGCTTTGCTGCCGACATGCATGGTGCCCACAGCGCGGAGTGCTGCTTCTGCGGCGTCCGT
GGTGTAC----GGGCAGGCGCTGCGGGGCCCTGCCAGCCGTGCGACGGCCACGTCCATGGCGCCAACATGCTCTCCTGCT
GCCGAAGCCACGCCTACCAGCTCTGGGTCACCTGCTGCATCGTCGCGACTCACGACCCCTCCTTCCGCAGCGGCACCGCT
CGGTTTCTCTGGTCGAACTGCGACTATGAAGAGCAGCGACATTGGAGGCTGTTGCAGTCGC------TACAGGCCTACC-
-----------GCTACAGTGGGTGCC--TCTCGGCAGGAGAGCTCGCGGCGATCCTCGGCGTAGTCGGTTG---------
TCGGCGACAAAACGGCTAGCAGGCCGGCCTCGAGTGCAACCGGCGCTGCTCGCGACTGAAGGCCGCGGGCGCGCGGACAC
GGCGCTGCCATCCTCGTCGGG----AGAAAGAAAGAAGGGGCGCAGCATGGACAACCACCGCCAAACAGAACATGAGTGC
CTCTACGTTCCTGCCCGGTTGTGCAGATGCACCACTCCAAAGTGGTTTCTCCGTAGTAGAGCACGTCGCCGGCGTGCTGC
TCGGCCTGGAAGCATCAAGCCTATACACCACACATGCAGCAGCAGCATCATGCCAGCCGCGCAGACACGCAAAGCAGCAC
CAGGACGCGTCAGGCCA---------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------
>chr6D_75
--------------------------------------------------------------------------AAGTGT
ATCGTTGTACAGGGTGTCAGGTCTTTGCTGCCGACATGCATGGTGCCCACAGCG----GTGCTGCTTCTGCGGCGTCCGT
GGTGTACTGCCTGGCAGACGCTGCGGGGCCCTACCAGCCGTGCGACGGCCACGTCCATGGCGCCAACATGCTCTCCTGCT
ACCGAAGCCACGCCTCCCCGCTCTGGGTCGCCTGCTGCATCGTCGCGACTCACGACCCCTCCTTCCGCAGCGGCACCGCT
CGGTTTCTCTGGTTGAACTGCGACTATGAAGAGCAGCAGCATTGGAGGCTGTTGCAGGCGCGGAGGCGCCGT------C-
-----------GCTACACTGGGTGCC--TCTCGGCAGGAGAGCTCGCGGCGATCCCCGGCGTAGTCGGCTG---------
TCGGCGACAAAACGGCTAGCAGGCCGGCCTCGAGTGCAACCGGCACTGCTCACCACTGAAGGCCGCGGGCGCGCGGA-AC
GGCGCTGCCATTCTCGTCGGGAGAAAGAAAGAAAGAAGGGGCGCAGCGTGGACAACCACCGCCAAGCAGAACATGAGTGC
CTCTACGTTCCTGCGCGGTTGTGCAGATGCACCACTCCAAAGTGGTTTCTCCATAGTAGATCACGTCGCCGGCGTGCTGC
TCGGCCTGCAAGCATCAAGCCTATACAACACACATGCAGCAGCAGC----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------
-----------------------------------------------------------------------------S--
-----------------------------------S--------------------------------------------
-------------S-------------S-------S---S-S----S-----S--------------------------S
---------S------------S----------------S----------------------------S--SSS-SSSSS
SSSSSSSSSSS-------S-------SS-------------------------------S-----------SSSSSSSSS
-----S-------------------------------------------------S-------------S----------
-----S---------------------------S----------------------------------------S-----
--------S--S---S-------------------S---------S--------------------S-------S-----
--------------------------------------------------S-----------------------------
-----------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_830
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------CAGGCCAGAGACATGAACGT--------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------
>reverse_1839
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------GC
CGCAGAACACAACACATT--------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------
