>input_sequence_84307
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------ATGGGGAGGCAGCGGCGGTGGTCACGCGCG
GCGCTCCTCGCGTGCCTGCTGCTCCTCG---CCGCCGCGTGCGCCGAGTCGGCGCGCCCGGGGCCGCTGGCAGC---GGC
GAGCGAAGGGCTGCCTCGCGGCGCGAGCGTGAGCGCTGACGACAG------CGGCGGCGACGGCCCGCGGAGGAGCGCGT
TCGACGTGCTGGTGGAGGGCCTCGTCAGCATCGGGCTGGGCCGGCGGTGGCGCGCCGGCGACGGCGTCGGGCTGGTGGAC
GGCGACAAGCGGCGCGTGCCGACGGGGCCCAACCCGCTGCACAACAGATGA-----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------
>chr2B_1_TraesCS2B01G528500
CGCAGGGACTTTCGAAAGCCCGTTTTGACCGTGCC-----TCGCTCCACCCCACCCCACCCGGACCATACTGTACACAGT
ACCACGTACTGACCAAACGAAAGGAGTACTATACTACGCTACAGTTACGTACACCGCCTCGACGTACATACGCCGTCCAG
CTAGCGACACTGCAGCGAGCACACGA--CAATAAAGTCGACGACCTGGCCTA--GTACTAAATGTAGCTCA----TACAC
ATCGTGCGTTTTACGGGCGTGCAGATAATTGCTTGATTA---GCTTGATTGGGTCCTGGGAGCGTAGTACATGCACGTAG
GAATAGATCATGGGGAGAATCATTCTGCTCGCCGTAATGCTGCGCCTTTTACGGTACCACCGTGGTGCCAAGTTGACGCC
TCCTCCCTCATAAGCCATAATAATCCTTGGAGAGAGAGAGGGAGAGAGACTAGACGAGTGTGAGTGTGAGTGTGAGTGTG
CAGTGGGAGAAGAGCATGAGCATGAGCCCC----CGGCCGGCCCTGCTCACCAAACTTTCCATTTCATCCCCAC--CTTT
TCCATCCATCCATCTGATCTGAGG------GAGAAAAGCGTGGCGGCCTTTGTGC-----GGGCGTCTCCCTCTGTGTGT
GTGTGTGTCTCTCGCTA------TAGACAGGTGAGCAGAGGTGAGCTGAGGCAGTGGCAGGGA---GGAAGCAGCGAATT
GAAGATCCTTAAATGCGGTTTGGTGGCATCCCCGCGCGCGCTGGCCCCCATGCAG--GCCTGGCCTGCCGTGGACGCATG
GGTGCAACATGCCACCACCATTGCCATTGCCATTGA---------CACCCCCACCTACATAAATCCCCTCCCGCTAGCCT
CTCCTCCGGCTTTTACCGCTCTTTGACTCCACTCCAC-CGCCCA------------GCCACCCAG------------CTC
CTCCTCCGCTCCCACACGCCAA---AACATTCA----CTTGTTACTTAAGCTTCTTGCTTGCTTGCTTGCTTGAGTGCTC
GCCGCGC-----CGCGCTCGCGCCGGCCGTGGATCGATCGGCCGCGCCGTATGGGGAGGCAGCGGCGGTGGTCACGCGCG
GCGCTCCTCGCGTGCCTGCTGCTCCTCG---CCGCCGCGTGCGCCGAGTCGGCGCGCCCGGGGCCGCTGGCAGC---GGC
GAGCGAAGGGCTGCCTCGCGGCGCGAGCGTGAGCGCTGACGACAG------CGGCGGCGACGGCCCGCGGAGGAGCGCGT
TCGACGTGCTGGTGGAGGGCCTCGTCAGCATCGGGCTGGGCCGGCGGTGGCGCGCCGGCGACGGCGTCGGGCTGGTGGAC
GGCGACAAGCGGCGCGTGCCGACGGGGCCCAACCCGCTGCACAACAGATGA--------GTACGTACGAGCTAGCTAGCT
TGCTAATCACCCGTTAGCTCTGGACCTCGTAGCGTCCGTCGGTCCGTATACTGGCACCGTCGCCGGCGGTGGCCGAGCGA
CGGCGAGCGCGAGCGGAGGAGGAGAAGAATGGGAAGGAGAAGAGAGGATAGGAGCTCGTAGTATTGCTGTTCCCTTCTGC
TTCCCTTTCTTCTTTTTCCCCCTGA---------------------------------------------------TTTT
TCTTCTTCTTCTTCTTCTTCTTTCCTACTACTA---GCTAGCTACCTTTTTGCTGCTTGTCTTTTGCCCTTATT-TTCTT
GTGCCCTTGATTGGTTTGTGAAGTGGACAGCAAGGCCATTCTGTTGGTTGAAAGAGATAGATATATGAGTATATACTTC-
-TTTGTTTGCTTGCTCCAGCAATGTGTTCATATA--TTGACACCATATTCTCACATGATCTTGCCTCAGATCACACCCAC
CAAACCTTCACCTCACACTGATTTTCCTTGCTGCATTCCTTTTTTGTTCTTCTCCGCTTCATTATGTTGACATGTTGACG
ATATCCTCGCATGATCTTGCCTGAGATCACACGGAGCAAAAGTTCACCTTACATTGATTTTCCTTATTG---TTCTGCCA
AAGGGCTGTAAAGTTGTTACC-AGCACTGAGTTTCCTTATTATTCTGTCAAACGTTTCCGAAGAAAATGGAGTGCGTG--
-AGTACGAAAATGGCTGTGGATTGAAGAATACGGCATCGTTCCAGAAAGGAAGGGAATGGATTGCAGGGAGCCTTCTCGA
GGAAGATACTAGGAGAAAGTAGTCCACAAAA-GGCTGGGATGTGATGAACACAT-TTTTTTGGTTCAAACAAGAATGATG
AACGCATCAATCGATCGATCGCCTCCATTGGCGAGCGCACTTTGAGCACTAAATTTTGGAGCACTATCATTTTTGGGT--
-TGTGATGATTCGTCTTTGAATTACCACGTCTTCACTCCCATTTCTTCAGTACAATTCCTAAGTTAGTATACTGCCTTTC
GATAACAGAG
>chr2D_1
CGCAGGGACTTTCGAAAGCTCGTTTTGACCGTGCCCCCGCTCGCTCCACCCCACCCCACCCGGACTATACTGTACACAGT
ACCACGTACTGACCGAACGAAAAGACTACTATACTACACTACAGTTACGTACACCGCCTCGACGTACATACGCCGTCCAG
CTAGTAGCAATGCCGCAGCACGTTGTCGCAGTAAAGTTGACGGCTTGGCGTACAGTACTAAATGTAGTTCATAGATACAC
ATCGTGCGTTTTACGGGCGCGCAGATAATTGCTTGGTTAGTGGCTTGATTGGGTCTTGGGGGCGTAGTACATGCACGTAT
GAATAGATCATGGGGAGAATCATTCTGCTCGCCGTAATGCTGCGCCTTTTACGGTACCACCGTGGTGTCAAGTTGACGCC
TCCTCCCTCCATG---ATAGTAATCCTTGGGGAGAGAGAGG----GAGACTAGACGAGTGTGAGTA------------TG
CAGTGGAAGATGAGCATGAGCATGAGCCCCCGCCCGGCCGGCCCTGCTCACCAAACTTTCCATTTCATCCCCACGCCTTT
TCCATCCATCCATCTGATCTGAGA------GAGAAAAGCGTGGAGGCCTTTGTGC-----GGGCGTCTCCCTCTCTCTGT
GTGTGTGTC--TCGCTC------TAGACAGCTGAGCAGAGGTGAGCTGAGGCAGTGGCAGGGA---GGGAGCAGCGAATT
GAAGATCCTTAAATGCGGTTTGGTGGCATCCCCGCGCGCGCTGGCCCCCATGCAG--GCCTGCCC-----TGGACGCATG
GGTGCAACATGCCACCACCATTGCCATTGCCATTGCCATTGACACCACCCCCACCTACATAAATCCCCTCCCGCTAGCCT
CTTCCCCGGCTTTTACCGCTCTTTGACTCCACTCCACTCCACCACCCAGCCAGCCAC-----------------------
--CCTCCGCTCGCACACGCCAA---AACATTCATTCACTTGTTAGTTAAG---CTTGCTTGCTTGCTTGCTTGGGTCCTC
GCCGCGTCGCGTCGCGCTCGCGCCGGCCGTGGATCGATCGGCCGCGCCGTATGGGGAGGCAGCGGCGGTGGTCGCGCGCG
GCGCTCGTCGCGTGCCTGGTGCTCCTCGCCGCCGCCGCGTGCGCCGAGTCGGCGCGGCCGGGGCCGCTGGCGGC---GGC
GACCGAAGGGCTGCCTGCCGGCGCGATGGAGAGCGCGAGCATC------GACGGCGGCGACGGCCCGCGGAGGAGCGCGT
TCGACGTGCTGGTGGAGGGCCTCGTCAGCATCGGGCTGGGCCGGCGGTGGCGCGCCGGCGACGGCGTCGGGCTGGTGGAC
GGCGACAAGCGGCGCGTGCCCACGGGGCCCAACCCGCTCCACAACAGATGAGTACGCACGTGCCTGCCACGTAGCTAGCT
CGCTAATCACCCGTTAGCTCTGGACCTCGTAGCGTCCGTCGGTCCGTATACTGGCGCCGTCGCCGGCGGTGGCCGGGCGA
CGGCGAGAG-GAGCGGGGGAGGAGAAGAACGGGAAGGAGAAGAGAGGATAGGAGCTCGTAGTATTGCTGTTCCCTTCTGC
TTCCCTTTCTTCTTTTTCCCCCTGA---------------------------------------------------TTTT
TCTTCTTCC---TCTTCTTCTTTCCTACTACTA---GCTAGCTACCTTTTTGTTGCTTGTCTTTTGCCCTTATTTTTCTT
GTGTCCTCGATTGGTTTGTGAAGTGGACAGCAAGGCCATTCTGTTGGTTGAAAGAGATACATATATGAGTATATACTTC-
-TTTGTTTGCTTGCCCCAGCAATGTGTTCATGTA--TTGACACCATATTCTCGCATGATCTTGCATCAGATCACACGCAC
CAAAAGTTCACCTTACATTGATTTTCCTTGCTGCATTCATTCTTTTTC---CTCCCCTTCGTTATGTTGACATATCGGCG
ATATTCTCGCATGATCTTGCCTGAGATCACACGGAGCAAAACTTCACCTTACATTGGTTTTCCTTATTATTATTCTGCCA
AAGGGCTGTAAAGTT-TTACC-AGCAATGAGTTTCCTTATTATTCTGCCAAACGTTTCTGAAGAAAAAGGATTGCAGGAG
TAGTACGAAAATGGCTGTGGATTGAAGAATACGGCATCGTTTCAGAAAGGAAGGGAATGGATTGCAGGGAGCCTTCTCGA
GGAAGATACTAGGAGAAAGTAGTCCACAAAAAGGCTGGGATGTGATGAACACAT-TTTTT-GGTTCAAACATGAATGATG
AACGCATCAATCGATCGATCACCTCCATTGGCGAGCGCACTTTGAGC---------------------------------
--------------------------------------------------------------------------------
----------
>chr2A_502
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------CCCCGCTCACCAAACTTCCCATTTCGTCCCCAA--CTTT
TCGTTCCATCCATCTGATCTGCGATGAGATGAGAAAAGCGTGGCGGCCTTTGTGCTGTGCGGGCGTTTCCCTCTCTCTCA
CTCACTCGCTATAGTAGTAGTAGTAGACAGCTGAGCTGGGGTGAGCTGAGGCAGCGGCAGGGAGGAGGAAGCAGCGAATT
GAAGATCCTTAAATGCGGTTTGGTGGCATCCCCGCGCGCGCTGGCCCCCATGCAGACGCCTGCCC-----TGGACGCATG
GGTGCAACATGCCACCACCATTGCCATTGCCATTGCCATTGACACC--CCCCACCTACATAAATCCCCTCCCGCTGGCCT
CGCCCCCGGCTTTTACCGCTCTTTGACTCCACTCCAC-CCCCCACCCAGCCGCCCGGCCACCCAGCTCCTCCTCCTCCTC
CTCCTCCGCTCCCACGCGCCAGCCGAACACACG----CTTGTTAGCTAAG---CTCGCAGCGC-----------------
------------------CGCGCCGGCCGTGGATCGATCGGCCGCGCCGTATGGGGAGGCAGCGGCGGTGGTCGCGCGCG
GCGCTCCTCGCGTGCCTGGTGCTCCTCGCCGCCGCCGCGTGCGCCGACTCGGCGCGCCCGGGGCCGCTGGCGGCAGCGGC
GACCGAAGGGCTGCCTGCCGGCGCGAGCGTGAGCGCCAGCGGCAACGAAGACGGCGGCGACGGCCCGCGGAGGAGCGCGT
TCGACGCGCTGGTGGAGGGCCTCGTGAGCATCGGGCTGGGGCGGCGGTGGCGCGCCGGCGACGGCGCCGGGCTGGTGGAC
GGCGACAAGCGGCGCGTGCCGACGGGGCCCAACCCGCTGCACAACAGATGAGTACGCACGTACGTACTACAGCGGTAGCT
AGCTGATCGCCCGTTAGCTTTCGGACCTCG--------------------CTGGCGCCATTGCCGGGCGCGTGCGGGGCG
GCGAGCA--------GAGGAGGAGAAGAACGGGAAGGAGAAGAGAGGATAGGAGCTTCTAGTATGGCTGTTCCCTTCTGC
TTCCCTTTCTTCTTTTTCCCCCTGATTTTCCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCT
TCTTCTTCTTCTTCTTCTTCTTTCCTAGTAAGGAGTGCTAGCTACCTTTTTGTTGCTTGTCTTTTGCCCTTATT-TTCTT
GTGTCCTCGATTGGTTTGTGAAGTGGACAGCAACGCCATTCTGTTGGTTGAAAGAGATACATATATGAGTATACTACTTC
TTTTGTTTGCTTGCTCCACCAACCTGTTCATATATATTGACACCATATTCTCGCATGATCTTGCCTCAGATCACACACAC
--------------------------------------------------------------------------------
------------------------------------CAAAACTTCACCTTACATTGGTTTCCCTTGTTATTATTCTGCCA
AAGGGCTGTAAATTT-TTACAAAGCATCGAGTTTCCTTATTGTTCTGTCAAACGTGTCCGAAGAAAAGGGATTGCATGAG
TACG----AAATGGATGTGGATTGAAGAATACGGCATCGGGCCAGAAAGGAAGGGAATGGATTGCAGGGAGCCTTCTCGA
GGAAGATACTAGGAGAAAGTAGTCCACAAAA-GGCTGGGATGTGATGAACACGTATTTTT-GGTTCAAACATGAATGATG
AACGCATCGATCGATCGACCACCTCCATTGGCGAGCGCACTTTGAGCCTTCGCTTTCGGAGAACTATCATTTTTTTTTGC
CTGTGATGGTTCTTTTTCTGATTACCCCGTGTTCGCTCTCATTTCTTCAGTACAATTCCT--------------------
----------
>SNPs
-------------------S---------------------------------------------S--------------
--------------S-------S--S-----------S------------------------------------------
----SSS--S---S--SSSSSSSS-S----S------S----S-S----S-----------------S------------
-------------------S---------------S-------------------S----S------------------S
-------------------------------------------------------------------S------------
---------SSSSSSS---S----------S----------SSSS--------------------SSSSSSSSSSSSS--
------S---S---------------------------------------------------------------------
-----------------------S--------------------------------------------------S-S---
----------S-----S-------------S-------------------------------------------------
--------------------------------------------------------------S--SSSSS----------
-----------------------------------S--------------------------------------------
----S----------------------------------S----------------------------------------
--------------------------------------------S-----SSS--------------------S--S---
------S------------------------------------------------------------------S------
------------------S----------------------------------------------------S--------
--S-------------SS------------------SSS--S--S-----------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------S-SS---------
S------------------------------------------------------S-------------------S----
-------S-S-------------------S--------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------S---------------------------
---S---S---------------------------------------------------S--------------------
----------------------------------------------------S-----------------------S---
----SS-------S---S--------------------S--S---S-SSSS----S----S------------S-S-S--
----S------------------------------------S--------------S-----------S-----------
---------------S----------S----------------------------------------S---S---S----
--------------------------------------------------------------------------------
------------------------------------------------------------S----------S--------
--------------------S--------------------------SS-SSS---S----S------------SSS---
--------S---S-S--SSS------S---S---S---S---------------------SSSSSSSSSSSSSSSSSSSS
SSSSSSSSSS
>forward_412
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------TTGACGCC
TCCTCCCTCATA--------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------
>reverse_1530
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------CGAGCGGAGGAGGAGAAGAA---------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------
