>input_sequence_84293
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---------------------------------------------ATGGGGCTCTTCTCGTGGTGGAGGGGCTCCCGCCG
CGGCTCGCCGGAGCAGGCCCCGAGCCAGCAGGCCGCGAAGGGAGCGGGAGGCGCGCAGGCCCAGGTGGCCGTCCCCGGCA
CCCATGGGGCGGTGGAGGTGCTGCGGCAGCGGCA------GCCGGACGCGACGGTCTTCGAGTTCGGGTCGGCGGCGGAG
TCGGGCACCGCCGTCACGCTCGCCGGCTACTGCCCCGTCTCCGACGAGCTCGAGCCGTGCCGCTGGGAGCTGGTGCCCGC
CACCGGCGAGGGCGCCCCGCAGTTCCGCATCGTGTTCTGA----------------------------------------
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>chr1A_1_TraesCS1A01G319500
GCAAACTTTCTAATGGACCCCTCCTCCACTCAACTCTCCAATGACATAAAAAAGGAGGCGCCTCTATGGGCTAGAGCCGA
CGCCAAAGGCC----TAGATTAATCCATGTAACCTGAACTTACTCTCTGAGGCTGAGCAATCTTACCCCCTCTCTACTTA
ATCCATGCTTTTGATGTCGCCATGCTTGTGTACGTCACCAAAAGTAGCACCCCTATAAACTATCTCCCCTATTTATGAAT
GAAATGATACACATCATTGCATATTCGT-AATTAAAGCTTCACCAGATTCAA-CCTAACTCTTGAAGTTGGATGAGGACG
GTTAAGCTTTTGTTGACAAGCGTTGTGATAGATAAAAGAAAGCAAATTGCACGTTTAATACGTCAACTCGTTG-CGCGTT
AGAGCATCTCTAGTAGATTCCGTAAAAA-CGGTCAAACCTTGGTATTTATGGTACAAGCTGAAAAAATCATCCCGAATAG
ATCTTGT--AAAACAACATATCCTGTAAAAAAAAATTGCAGGCTCCCCTATATTCGAACCCCAGTCTGTTATGTTTAGAG
GATTTCGGCCGTTTTTGGAGGATCCTGTAAAGCCGGTCAACGCCGGAGCAGGGGACCTCTCGACGCCGTGCACAAGCAGC
GAACAGGCGGAGGAATTCGCCGACAGCTGGCCGGAGCATCGCCAGAGCACGCGTCGGC-----------CCGGCGCGTCA
CCAAAGTAGGTAGCGGGCCAAATCAGGCGGAAATCAAT-------------------------GTTCGAGTTCGTCCATG
CCTGTGTCCCAGGGAAGAAGAAGCATGAGGA-A-----AAA--------AAAATGTTTACTGTGTGGGTTTACAAAATTT
GTTCCGACTGAC--GCCTCGCTGTATCGTAAATTCGTTTTAGGGGAGCCCGTATAGTG---TTTTTAC------------
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------AGGTGGTGTTTAT--GGGATTGCTAGAGATGCTCTTGCACCGAACCCACGTCTAGATTGTTCCCCACCAAAACC
CTAGAATCCCCTAATCCAATCCCCACCGGTTCCCCACGTCTGCCGATGGGGCTCTTCTCGTGGTGGAGGGGCTCCCGCCG
CGGCTCGCCGGAGCAGGCCCCGAGCCAGCAGGCCGCGAAGGGAGCGGGAGGCGCGCAGGCCCAGGTGGCCGTCCCCGGCA
CCCATGGGGCGGTGGAGGTGCTGCGGCAGCGGCA------GCCGGACGCGACGGTCTTCGAGTTCGGGTCGGCGGCGGAG
TCGGGCACCGCCGTCACGCTCGCCGGCTACTGCCCCGTCTCCGACGAGCTCGAGCCGTGCCGCTGGGAGCTGGTGCCCGC
CACCGGCGAGGGCGCCCCGCAGTTCCGCATCGTGTTCTGAGCACGAGGAGATAAGCACCCCCTATGCTGCCGTCGCGCTA
TCTATCTTGGGTGTTGCGAGGTTTCTTGGGTACAAAGGTGTGATCTTTGGCTGTATACTGGTGCTTGTGCATTTCCCGAA
ATAAAGCTTGAGATATTGATGAGTCCTGGTGGATGATAACATGTGCTGGCTGAAATTCTGGGCTTGCTGTC-GTTTGTGA
TGAACAAATTAGCCAATTTCGGCAGCTCTTTATAACAC-TACCAAATTA-------------GATTGCTGTACTTTT--G
GCTTTTGTATGCACTGAAATTTGTGGGCCAGCCATTTGTTGAAATATTTTCAAGATGCAAACTAAATCTTCATAGGGATT
AGGGAGGTAGTACCTTGAAATTGTGGTGGAAGTCAATTTGCTCACTGGGAGATGTAGGAGTGTATGTCCTGTTGCATTGT
TAGAC-ATGAGTCCAAAAGATATCAAACAGGGAACCTGGGCTTGAATTGCTCCTTGACCAATGGTAAGGACAAGTACCTT
GCCACGACTGTCCGAGCAATAATTTCCTCATTGAG---CACATATGCAGCCATTTCCTGCCTTTTTTTGTGTCTGTACCT
TACCTTTGGGCTTAGAATTTTAGTTGATAGCACATACATGAAGATCCCAAACTAGTTGGTTCATGCCAATTGGAAGAAAT
TAGGTTTTGGCTTTCAAATTAGCTTATCTTGATGTATTGCTGTAC-TTTTGGCTTTGGTATGCACTGAAATTTGTGGATC
AGCCATTTGTTGAAATATTTGCAAGGTGCAAACTA---------------------------------------------
--------------------------------------AATCTTCATAGGGT----------------------------
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-------------TTCTCCAAAATGATTTGCTTCACTATTATTTGATGGAAAGGGATTTCTTTATGTGGTTAGCCATTTC
AAATTTCCGCCCTGAACTCGCTTGCAATTTTTTATCTTAATAACTTGTAA-CCTGAACTAGCTCACAATTTATGATGCTC
TTATATTGG--AT-----------GGCGCTAGTTTTCATG-TTTAGTACTA--GTAGTGTAGTAAGAGGCTACTAGTATA
ACA
>chr1B_2
-CAAACTTTCTGATGGACCCCTCCTCCACTCAGCTCTCCAATGACATCAGAAAGGAGGCGCCTCTATGGGCTAGAGCCCG
CGCCAAAGGCCTTGATAGATTAATCCATGTAACCTGAACTTACTCTCTGAGGCTGAGCAATCTTACTCCCTCTCTACTTA
ATCCGCGCTTTTGATGTCACCATGCTTGTGTACGTCACCAAATGTAGCATCCCTATAAACTATCTCCCCTACTTATGAAT
GGAATGATACACATCATTGTATATCCGC-AAATAAAGCTTCACCAGATTCAACCCTAGCTCTTGAAGTTGGATGATGACG
ACTAAGCTTTTGTTGACAAACGTTGTGATAGATAAAAGGAAGCAAATTGCACATTTAATACGTCAACTCACTGACGCATT
AGAGCATCGCTAGCAGATCCTGTAAAAA-CGGTCAAACCTTGGTATTTACGATACAAGCTGGAAAAATCACCCCGAACAG
ATCCTGT--AAAA-------------------AAATTGCAGGCTCCCCTATATTCGAGCCCCAGTCCGTTATATCTAGAG
GATTTCGGCTGTTTTTGGAGGATCCTGCAAAGCCGGACAAAGCCGAAGCAGGGGACCTCGCGACGTCGCGCACGAGCAGC
GAGCAGGCGGAGGAGCTCACAGGCGGGCGGCCGAAGCATCGCCAGAGCACGCGATGGC-----------CCGGTGTGTCA
CCAATGTAGGCAACGGGCCAAATCAGGCGGCAGGCCGGAGCGGCGCTGTTCTGGCCGACCAGAGTTCGAGTTCGTCCATG
CGTGCGTCCCAGAAAAGAAGAAGCATGAGGAGA-----AAA--------ACAATGTTTACTGTATGGGTCTATATGATCT
GTTCCACCC---ATGTCTCACGGTACCGTAAATTCGTTTTAGGCGTGTTTTTACACGTGGT-------------------
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---------------------------GCTAGAGACGCTCTTACACCAAACCCTCGTCTAGATTGTTGCCCACCAAAACC
CTAGAATCCCCTAATCCAATCCCCACCGGTTCCCCACGTCTGCCGATGGGGCTCTTCTCGTGGTGGAGGGGCTCCCGCCG
CGGCTCGCCGGAGCAGGCCCCGAGCCAGCAGCCGGCGAAGGGAGCGGGAGGCGCGCAGGCCCAGGTGGCCGTCCCCGGCA
CCCACGGGGCGGTGGAGGTGCTGCGGCAGCGGCAGCGGCAGCCGGACGCGACGGTCTTCGAGTTCGGGTCGGCGGCGGAG
TCGGGTACCGCCGTCACGCTCGCTGGCTACTGCCCCGTCTCCGACGAGCTCGAGCCGTGCCGCTGGGAGTTGGTGCCCGC
CACCGGCGAGGGCGCCCCGCAGTTCCGCATCGTGTTCTGAGCACGAGGAGATAAGCACCCC-TATGCTGCCGTCGCGGTA
TCTATCTTGGGTGTTGCCAGGTTTCATGGGTACAAAGGTGTGGTCTTTGGCTGTATACTGGTGCTTGTGAATTTCTCGAA
ATAAAACTTGAGATATTGATGGGTCCTGGTGGATGATAACATGTGCTGGTTGGAATGTTGGGCTTGCTGTC-GTTTGTGA
TGAACAAATTAGCCAATTTCAGCAGCTATTTATAAGAC-TATCAAATTAGCTTATCTTGATGGATTGCTGTAC-TTTTTG
GCTTTTGTATGCACTGAAATTTGTGGGCCAGCCATTTGTTGAAATATTTTCAAGATGCAAACTTTATCTTCTTAAGGATT
AG--------------GAAACCGTGGTGGAAGTCAATTTGCTCACTGGGAGATGTAGGAGTGTATGTCCTGTTGCATTGT
TAGAC-ATGAGTCCAGACGATATTTCCT-----GCCTGGACTTGAATTGCTCCATCACCAATGGTAAGGACAAACACCTT
ACCACGACTGTCCGAGCAATAATTTCCTCATTGAGCTACACATATGCAGTCATTTCCTGCCTTTTTTGT-ATCTGTACCT
TACCTTTGGGCTTAGACTTCTAATTGATAGCACATCCATAAAGATCCCAAACTATTTGGTTCATGTCAATTGGAAGAAAT
TAGCTTTTGGCTTTCAAATTAGCTTATCATGATGTATTGCTGTACTTTTTGGCTTTGGTATGCACTGAAATTTGTGGGTC
AGCCATTTGTTGAAATATTTGCAAGATGCAAACTACTCCATCCGACCCAAAATGTAAGACGTTTTTTGACACTACACTAG
TATTAAAAAACGTCTTACATTTCGGGATGGAGGGAGTAAATCTTTATAGAGAGAAATTATGATGGAACCTTGCTCACTGG
GAAATGCTAGGAGTGTTATCCTTACCTTTGGTTTCAGACCATTAATTAATAGCACATCCATAAAGATCCCAAATACTGTT
GGCCCATGTCAGTTGGAAGAATCGTCTAGCTAGTGCTAAAATACTGTTATTTGTGAACTCAGTTCTGTCTTATTGGGGGT
CCATTTCTCCTTCCTTTCTGATTTCATAATGTGAAACTTTTGAGTTCATTTAAGTTGGCCAAGGTGAATCATGGAACAAC
TGGGTGGTCAGAATTCTCCAAAATGATTTGCTTCACTATTATTTGATGGAAATGAATTGCTTTATGTGGTTAGCCATGTC
AGATTTCCGCTCTGAACTCGCTTGCAAATTGTTATCTTAATAACCTGTAA-CCTGAACTAGCTCATAATTTATGATGCTA
TTGTATATTTTATGGCACTAGAGTGGCGCTAGTTTTCAGGTTTTAGTACTA--GTAGTGTAGTAAGAGGCTACTAGCATA
ACA
>chr1D_205
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------------------------------------------------ACCCCCGTAAACTATCTCCCCTACTTATGAAT
GGAATGATACATATCATTGCGTATTCGTGAAATAAAGCTTCAACAGATTCAA-CCTAACTCTTGAAGTTGGATGAGGACG
GTTAAGCTTTGGTTGACAAGCGTTGTGATAGATAAAAGCAAGCAAATTGCACGTTTAGTACATCAACTCGCTAACACATT
AGAGCATCTATAGCAGACCCCGT-AAAA-AGGTCAAACGTTGGTATTTATGGTACAAGTTGAAAAGAATACCTCGAATAG
ATCCCGT--AAAACAGCATATCCCGTAATTTTTT-TTGCAGGCTCCCCTAT--TCAAGCCCCAATTTGTTATATCCAGAG
GATTTCAGCCGTTTTTGGAGGATCCTGTAAAGCCGGTCAATGTCGGAGCAGGGGACCTCGTGACGCCGCGCATGAGCAAC
GAGTAGGCGGAGGAGCTCGCTGGCGGCCGACCGGAGCATCGCCAGAGCACGTGCCAGGCTGGAGCATCACCGGAGCGTCA
CAGGAGCAGGCAGCGGGCCACATCAGGCGGCAAGCCGGAGCGGCGCAGTTCTGGCCGACTGAAATTCGAGTTCGTCTATG
TGTGCGCCTTAGGAAAGAAGAAGCGTGAGAGAAAAAAGAAA--------AGAAAATTTATGATACATGTTTACGGAATCT
GTTCCGCCCTTGATGCCTCGAGGTATCATAAATTTGTTTTAGGGGAGTCTGTATACTATTTTTATACTCCCTTCGTCCGT
GAATAAGTGTACTTCTATCATTTCTGCTAAGTCAAAGTTTTATAATTTTGATCAATTTTTTAGAAAAGAGTAGTAGTATA
TATGACATCAAATTGATATATTATGAAAATGCATTTCAAAACAAATCTAGTGATACTAATTTAGTGCCATAAATGCTGCT
ACTTTTTTCTATAAAGTTGGTTAAAGTTTTAAAACTTTGACTTAGGATAAAAGCTAGATGTATACTTGTTCGCGGACGGA
GGGAGTAGGTGGTGCTTTA--GGATCTGCTGGAGTGACCA-------AACCCCTCGTCTAAATTGTTCCCCACCAAAACC
CTAGAATCCCCTAATCCAATCCCCACCGGTTCCCCACGTCTGCCGATGGGGCTCTTCTCGTGGTGGAGGGGCTCCCGCCG
CGGCTCGCCGGAGCAGGCCCCGAACCAGCAGCCGGCGAAGGGAGCGGGAGGCGCGCAGGCCCAGGTGGCCGTCCCCGGCA
CCCATGGGGCGGTGGAGGTGCTGC------GGCAGCGGCAGCCGGACGCGACGGTCTTCGAGTTCGGGTCGGCGGCGGAG
TCCGGCACCGCCGTCACGCTCGCAGGGTACTGCCCCGTCTCCGACGAGCTCGAGCCGTGCCGCTGGGAGCTGGTGCCCGC
CACCGGCGAGGGCGCACCGCAGTTCCGCATCGTGTTCTGAGCACGAGGAGATAACCACCCC-TATGCTGCCGTCGCGGTA
TCTATCTTGGGTGTTGCCAGGTTTCGTAGGTGCAAAGGTGTGATCATTGGGTGTATACTGCTGCTTGTGAATTTCTTGAA
ATAAAACTTGAGATGTGGATGAGTCCTTGTGGAGGGTAACATGTGCTGGTTGGAATGCTGGGCTTTCTGTCAGTTTGTGA
TGAACAAATTAGCCAATTTCGGCAGCTCTTTATAAGATTTATCAAATTAGCTTATCTT-ATGGATTGCTGTAC-TTT--G
GCTTTTGTATCCACTGCAATTTGTGGGCTAGCCATTTGTTGAAATATTTTCAAGATGCAAACTAAATCTTCATAGGGATT
AGGGAAGTAGTACCTTGAAACCGTGGTGGAAGTCAATTTGCTCACTGGGAGATGTATGAGTGTATGTGCTGTTGCATTGT
TAGGCAATGAGTCCAGAAGATAACAAACAGTGAGCCTGGACTTGAATTGCTCCATGACCAATGGTAAGAACAAGCACCTT
ACCACGACTGTCCGAGCAATAATTTCCTCATTAAGCTACATATATGCAGCCATTTCCTGCCTTTTTTTTAATCTGTACCT
TACCTTTGGGCTTAGACTTCTAATTGATAGCACATCCATAAAGATCCCAAACTATTTGGTTCATGTCAATTGGAAGAAAT
TAGCTTTTGACTTTCAAATTAGCTTATCATGATGTATTGCTGTACTTTT-GGCTTTGGTATGCACTGAAATTTGTGGGTC
AGACATTTGTTGAAATATCTGCAAGGTGCAAACTG---------------------------------------------
--------------------------------------AATCTTCATAGGGAGAAATTGTGATGGAACCTTGCTCACTGG
CAAATGCTAGGAGTGTTATCCTTACCTTTGGGTTCAGACCATTAATTAATAGCACATCCATAAAGATCCCAAATTAT-TT
GGCCCATGTCAGTTGGAAGAATCGTCTAGCTAGTGCTAAAATAATGTTATTTGTGAACTCAGTTCTGTCTTATTGGGGGT
CCATTTCTCCTTGCTTTCTGATTTCATAATGTGAGACTTTTGAGTTCATTTAAGTTGGCCAAGGTGAATCATGAAACAAC
TTGCTGGTCACAGTTCTCCACCATGATTTGCTTCACTATTATTTGATGGAATGGAATTGCTTCATTTGGTTAGCCATTTC
AAATTTCTGCCCTGAACTCACTTGCAATTTATGATCTTAATAACTTGTAGCCCTGAACTAGCTCACAATCTCTGACGCTA
TTATATTGG--ATGGCACTAGAGCGGTGCCAGTTTTCATGTTTTAGTACTAGTGTACTACAGTAAGAGGGTACTAGTATA
ACA
>chr2D_394
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AGAGCATGTCTAGTAAATCCCGT-AAAATCGGTCAAACCTTTGTATTTACGGTACAAGCTGAAAAAAAG-CCCTGAATAG
ATCCTGCAAAAAATAGCATATGCCGTAAATTTGT-TTGCAGGCTTCCCTATATTCAAGCTCTCATATGTCATATACGGAG
TATTTCAGCCGTTTTTGGAGGATCCTGTAAAGCCGGTCACGCG-GGAGTAGGGGGCCTCGCGACGCCGCGCGCGAGCAGC
GAGCAGGCGGAGGAGCTCGTCGGCGACCGGCCAGAGCGTCGCC-------------------------------------
--GGAGCAAGCAGCGGGCCACATCAGGCGGCAGGCCGGAGCGACACCGTTCTGGCCGGTCGGAGTTTGAGTTCGTTCATG
CGTGCGTCCCGGTGAAGAAGAAGCGTGCGGAGA-----AAAAAGAAAACAAAACGTTTACGGTGCGTGTTTACGGGATCT
GTTCCGCCC---ACCTA-----GTACCGTAAATTCGTTTTAGGGGGGCCCATACACTATTTTTTTTAC------------
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------AGGTGGTGCTTTACGGGATCTGCTAGAGATGCTCT---------------------------------------
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>SNPs
S----------S--------------------S--------------S-S----------------------------SS
------------------------------------------------------------------S-------------
----SS------------S-----------------------S----------------------------S--------
-S-----------------------------S------------------------------------------------
--------------------------------------S-------------------------------S------S--
------------------S---------------------------------------------------S---------
---S-----------S-------S-----SSS-------------------------S--------------S-S-----
----------------------------------------S------------------S--------S----S------
--S-----------SS------S-S--S-------------------------S-------------------S------
----------S-------------------S--S-SSS------------------------------------------
-S--S---------------------------------------------------------------------S---S-
------S-SSSS---------S---------------------------------S-S----------------------
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--------------S--SS----SSS----------------S----S-----S--------------------------
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-------------------------------S-S----------------------------------------------
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-----------------------S--------------------------------------------------------
-------------------------------------------------------------S---------------S--
-----------------S-------S-------------------------------------------S-----S----
-----S-------------------------------------------S--S---S-----------------------
-----------------------------------S-----S-------------------------------S------
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-----S--------------SS----------------------------------------------------------
---------------S--------------S--S-----S-------------S--------------------S-----
S-------------------------------------------------------------------SSS---------
----------------S--S--S------------S---S--------------S----------S--------------
---S------------------------S------------------------------------------------S--
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---------------------------------------------------S----------------------------
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------------------------------------------------------S---S---------------------
------------------------------S------------------------------------------------S
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>forward_802
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--------------------------------------------------------------TGTTCGAGTTCGTCCATG
CC------------------------------------------------------------------------------
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>reverse_2111
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------------------------------GGAACCTGGGCTTGAATTGC------------------------------
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