>input_sequence_84282
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-------------------------------------------------------------------------ATGGACA
TCGGTTTGTACAAGCGTGCCAGAGCAACGAGGCACAAGGCGGCGATGCCATTCTACCCCCGGTCGCCAGCGGCGGCGGCC
CCTGCCGCACCGGTCCAGGCAGGCAACAAGGAG-----------------------------------------------
-------ATGCCCCCCGCAGCAGCGCCATGGCCGCTGACGCCCCGCCGCCGGGGGTGATCACTGTGCAGGTGATGGCGCC
TGGCAACAGCAAGCACTGCAACGGACCAGGAGGCGACGCTGACGTTGACCGCCGTGCCGCCTTGTACATATCGATGGTGC
AGGAGCGGCTCAAGCG------------CGAGGGCATGCACAAGCGCTGA------------------------------
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>chr2A_1_TraesCS2A01G283400
ATTGAGCGTCCTTCTCCTCCACGGCGTCGTCCATGGACGCAACCTCGCCGCCGTCAGATCCCCACCCCTCTAGTACTAGT
ATTAACGTAGTATGTAGTATGAACTATGTTTGTAGTGTTTGATCTATGTAGTATGTGATGAACTACTCGTGTCAACGAGG
TACAATTTCTACCGCGAAAGTGTTTTTTCAAATTATGCAGTTTTAGATACGGTTTCTGTTCGGCCGCGCTAGTTTTCGAC
CCGCAAATGAGATCTTCATGAAACTGCAAACGCGTTTTGCGGGTCGAGTTTTTGCAGGGTCTGCTAGAGTTGCTCTAAGG
ATATCACGGGTGTCACTGTTTCATGAAACTTGACACGTGAGTAGAATGGTCGATCAAGTTTGATACCCAATTTTTTTTAG
ATTTTTATTTATTTATTCTAGTATTTTTATGATTTCACTATTCATGTGGATGCATGTGGAACAATGTTCACCGTGTATTT
T-GACAAAACAGATCATATTATCTCTAGTTAATCAGATCTTATCACATTTGAGCTGCTTGAAGTCTGATGGAATGCAAAG
TAATCCATATCGCTATTTCGGTTATTGTTTACTGATGTGAACTGAGCAATGCACGCGCATGTGCATCATGTCCAACAGTA
AGTGCATATCTCAGAAAAGAATGTTGTGGATATTCCATCCAAGGACACGATATTCCCTCTTTCTTTCTTTTTTGCAGGTA
ATGCTCTCTTAGTTTCAAAAAATGTAGTGCAAATCAAATGTGTCTATAGTTGATCAAGTTTTAAGAAAAATATATTAGTA
TGCACAATACAAAATTAGAATCATTAGATTCGTCATGAAGTGCACTAATTTATTTAACATTTAGAAAGAAGGATTCCCCG
TTTCGAAAAACATTTAGAAAGAAGGATTCAGAAACTACTATAAATTGACATGAACGGAATACCTCGAGCCTACACACCGC
ACAAGTACAGAAC--------------------------------AAACATACAACGACACCTCACCTGTGCAATGGACA
TCGGTTTGTACAAGCGTGCCAGAGCAACGAGGCACAAGGCGGCGATGCCATTCTACCCCCGGTCGCCAGCGGCGGCGGCC
CCTGCCGCACCGGTCCAGGCAGGCAACAAGGAG-----------------------------------------------
-------ATGCCCCCCGCAGCAGCGCCATGGCCGCTGACGCCCCGCCGCCGGGGGTGATCACTGTGCAGGTGATGGCGCC
TGGCAACAGCAAGCACTGCAACGGACCAGGAGGCGACGCTGACGTTGACCGCCGTGCCGCCTTGTACATATCGATGGTGC
AGGAGCGGCTCAAGCG------------CGAGGGCATGCACAAGCGCTGACGCGCCGGAGGAATAAGTACACTGCTGATT
CATAGCGAGCTTTCCGATCTTGTTTTGCTTGAGTGATGCCGTACGTGTGTTTTGTAAAATCACATGATGTTTGAGTTGAA
CATATGTAATCCGAGCTTAACATACAAAGTTACCAACGTCTAAGATCACGAGAGAGAGACAGTCCATGCATTCGGTAGCA
ATGTGATGTGATCAAAGACGTTGTTTGATTGACTTCAGTGCCCTTAGTCATGCCCAGTAATATGATGTAGGTTTGTCCTG
AACCTCAGTAACAATTTTTATCTTTTTATGTTTCCTTTTTCAAGGAGGAAGACTGTTCTTATCTTTG-------------
--------------------------------------ACCAGACAACAGCAGAAAATTGATGTTCCAAATGTTTAACAG
TAAGATGGCAGTAGGATATCTCTGGTCAGTATTTAGTGATTTTTCTGCCTTCTAC---AAAACATCAACAGATGCCTATA
TGAAATGAAGAACATGCGTACCTACTCCATAATATTCCTCTCCAAGAAGCAGCACAACTGATCAGGGTGTTCACAAGTCG
GTGGTACTAGAAGATTACAGTACTACCAAAATCCATATCAATCTCTATTCGCTCTCATTTTGACCGAGCACTGTTGTACG
ACAATAGATTAAGTTTCTCTTATGTTGCTAATAGTGGCACAGGATGCGACGCCATGGACCGGCAGTTGGAACTCCCCGAA
CCCCAGCGAGCAGCAGAACTCGCTCCACACATCAGGCTAAACATGAGCAAACTTGATCTCCATGTACTGGCAACTTTGCA
GTCAAGCACCACTCTTGATTCGACACCGAGCTGCTGTAGAGTTTAGGGACAGAAAATAAGACACGGAATGAGTTCTGTCG
TAGCATACCTAGTTACTC---TTTGTTAACCAAAATTTAACATCTGCCCAAAATCTTGAGTTGCCTATTTTATGGAAATC
TTGTGTTCAGTTATTACGATACTGTGTTATGCAAGAAACCAACATGATCCTTATTCTAAACTAGATG
>chr2D_316
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---------------------------------------------------------------------------TAAGG
ATATCACGGGTGCCACTGTTTCAAGAAACTAGACACGTGAGTAGAATGGTCGATCAAGTCTGATACCCAAATTTTTTTAG
ATTTTTATTTATTTATTCTAGTATTTTTATGATTTTACTATTCATGTGGATGCATGTGGAACGATGTTCACCGTGTATTT
T-GACAAAACAGATCATATTCTCTCTAGTTAATCAGATCTTATCACATTTGAGCTGATTGAAGTCTGATGGAATGCAAAG
TAATCCATATCGCTATTTCGGTTATTGTTTACTGTTGTGAACTGAGCAATGCACACGCATGTGCATCATGTCCAACAGTA
AGTGCATATCTCAGAAAAGAATGATGTGGATATTCCATCAGAGGACACGATACTCCCTCTTTCTTTCTTTTTTGCAGGTA
ATGCTCTCTTAGTTTCAAAAAATGTAGTGCAAATCAAATGTGTCTAAATATGATCAAGTTTAAAGAAAAATATATCAGTA
TGCACAATACAAAATTAGAATTATTAGATTCGTCATGAAGTGCACTAATTTATTT-------------------------
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>chr2B_316
TAAA----------------------------------------------------------------------------
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-------------------------------------------------------------------------------G
ATATCACGGGTGCCACTGCTTCACGAAACTTGACACGTGAATAGAATGGTCGATCAAGTTTGATACCTAATTTTTTATTT
TAAAAA----------TCTAGTATTTTTATGATTTTACTATTCATGTGGATGCGTGTGGAACAATGTTCACCATGTATTT
TTGACAAAACAGATCATATTCTCTCTAGTTAATCAGATCTTATCATATTTGAGCTGGTTGAAGTCTGATGGAATGCAAAG
TAATCCATATCGCTATGTCGGTTATTGTTTATTGCTGTGAACTGAGCAATGCACACGCATGTGCATCATGTCCAACAGTA
AGTGCATATCTCAGAAAAGAATGATGTGGATATTCCATCAGAGGACACGATACTCCCTCTTTCTTTCTTTTTTCCAGGTA
ATGCCCTCTTAGTTTCAAAAAATGTACTGCAAATCAAATGTGTCTGTATTTTATCAAGTTTTAAGAAAAATATATCAGTA
TGCACAATATAAAATTAGGATCATTAGATTCGTCATGAAGTGCACTTATTTATTT-------------------------
--------AACATTTAGAAAGAAGGCTTCAGAAACTGCTATAAATTGCCATGAACGGAATGCCTCGAGCCTACACACCGC
ACAGGTACAGACTACAA-------------------------AAGAAACATACAACGACACCTCACCTGTGCAATGGACA
TCGGTTTGTACAAGCATGCCACAGCGACGAGGCACAAGACGGCGATGCCCTTCTACCCCTGGTCGCCAGCGGCGGCAGCC
CCTGCCGCACCGGTCCAGGCAGGCAACAAGGCG-----------------------------------------------
-------AT--------------------------------------------------CACTGTGCAGGTGATGGCTCC
TGGCAACAGCAAGCACTGCGACGGACCAGGAGGCGACGCTGACGTTGACCGCCGTGCCTCCTTGTACATATCGAGGGTGC
AGGAGCGGCTCAGGCG------------CGA------------GCGCTGACGTGCCGGAGGAACAAGTACCCTGCTGATT
CGTAGCGAGCTTTTCGATCTTGTTTTGCTTGAGTGATGCCGTACGTTTGTTGTGTAAAATCACGTGATGTTTGAGTTGAA
CATATGTAATCCGAGCTTAACAAAGTTA-----CAACGTCTAGATCAC---GAGAGAGGCAGTCCATGCATTCA-TAGCA
ATGTGATC------AAGAGGTTGTTTGATTAACTTCAGTGCCCTTAGTCATGCCTAGTGTTATGATGTAGATTTGTCCTG
AACCTCAGTAACAAATTTAATCTTTTTATGTTTCCTTTTTCAAGGAGGAAGAGTGTTCTTATCTTTTACTCCCTAAAGTT
AGCACAAAGTTGGGTCATCTATTTTGGAACGGAGGAGTACCAAACAACAGCAGAAAATTGATGTTCCAGATGTTTAACAG
TAAGATGGCAGTAGGATATCTCTGGTCAGTATTTAGTGATTTTTCTGCCTTCTACTACAAAACATCAACAGATGCCTATA
TGAAATGAAGAACATGCGTACGTACTCCATAATATTCCTCTCCAAGAAACAGCACAACTGATCAGGGCGTTCACAAGTCG
GTGGTGCTAGAAGATTACAGTACTACCAAAATCCATATCAATCTCCATTCGCTCTCATTCTGG-CGAGTAGTGTTGCACG
ACAATAGATAATTTG-CTCTTATGTTGCTAATAGTAGTACAGGATGCGACGCCATGG-CCTGCAGTTGGAACTCCCCGAA
CCCCAGCAAGCAGCAGAACTCGCTCCACACATCAGGCCAAACATGAGCAAACTTGATCTCCATGTACTGGCAACGTTGCA
GTCAAGCACCACTCTTGATTCGACACCAAGCTGCTGTAGTGTTTAGGGACAGAAAATAAGACAGGGAATAAGTTCTATTG
TAGCATACCTAGTTACTCGTATTTGTTAACCAAAATTTAACATCTGCCCAAAATCTTGAGTCGCCTATTTTATGGAAATC
TTGTGTTCAATTATTACGATAC--TGTTATGCAAGAAATAAACATGATTCTTGTTTTATACTAGATG
>chr2D_894
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--------------TAGAAAGAAGGATTCAGAAACTACTATAAATTGCCATGAACGGAATACCTCGAGCCTACACACCGC
ACAAGTAGAGAAGAAACGGGGCAAAAGATCCAATTTCTCGGGAAGAAACATACAACGACACCTCACCTGTGCAATGGACA
TCGGTTTGTACAAGCGTGCCAGAGCAACGAGGCACAAGACGGCGATGCCCTTCTACCCCCGGTCGCCCGCGGCAGCGGCC
CCTGCCGCACCGGTCCAGGCAGGCAACAAGGCGGTGCCCCCTGCCGCTGCGCCATGGCCGCTGACGCCCGCTCCGCCGCA
GGGGGTGAT--------------------------------------------------CACTGTGCAGGTGATGGCGCC
TGGCAACAGCAAGCACTGCGACGGACCGGGAGGCGACGCTGACATTGACCGCCGTGCCGCCTTGTACATATCGAGGGTGC
AGGAGCGGCTCAGGCTCGAGCGCATGCACGA------------GCGCTGACGTGCCGGAGGAACAAGTACCCTGCTG---
CGTAGCAAGCTTTTCGATCTTGTTTTGCTTGAGTGATGCTGTGCGTGTGTTGTGTAAAATCCCGTGATGTTTGAGTTGAA
CATATGTAATCCGAGCTTAACATACAAAGTTACCAACGTCTAGATCAC---G----------------------------
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-------------------------------------------------AGACTGTTCTTATCTTTG-------------
--------------------------------------ACCAGACAACAGCAGAAAATTGATGTTCCAAATGTTTAACAG
TAAGATGGCAGTAGGATATCTCTGGTCAGTATTTAGTGATTTTTCTGCCTTCTAC---AAAACATCAACAGACGCCTATA
TGAAATGAAGAACATGCGTACGTACTCCATAATATTCCTCTCCAAGAAGCAGCACAACTGATCAGGGTGTTCACAAGTCG
GTGGTACTAGAAGATT-CAGTACTACCAAAATCCATATCAATCTCTATTCGCTCTCATTTTGA-CGAGTACTGTTGTACG
ACAATAGATTAAGTTTCTCTTATGTTGCTAATAGTAGCACAGGATGCGACCCCATGGACCGGCAGTTGGAACTCCCCCAA
CCCCAGCGAGCAGCTTATGTCGCTCCACACATCAGGCTAAACATGAGCAAACTTGATCTCCATGTACTGGCAACGTTGCA
GTCAAGCACCACTCTTGATTCGACACCGAGCTGCTGTAGAGTTTAGGGACAGAAAATAAGACACGGAATAAGTTCTATTG
TAGCATACCTAGTTACTC---TTTGTTAACCAAAATTTAACATCTGCCCAAAATCTTGAGTTGCCTATTTTATGGAAATC
TTGTGTTCAGTTATTGCGATACTGTGTTATGCAAGAAACCAACATGATTCTTATTCTAAACTAGATG
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----
------------S----------S--------------------------------------------------------
-----------------------------------S--------------------------------------------
--------------------S-----------------------------------S-----------------------
----------------------------------S-------------------S-------------------------
-----------------------S---------------SS-----------S---------------------------
------------------------------------------------S--------------------------S----
-------------------------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSS---------------------------------------S--------------------------------
------------S-------------------------------------------------------------------
--------------------------------------S----------S------------------------------
-------------------------------S------------------------------------------------
---------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------------
-------------------S------------------------------------------------------S-----
------------S------------------SSSSSSSSSSSS---------S----------S------S---------
-S-----------S-------------------------------------S-----------S----------------
------------------------------------------SSSSSSSSS-------S--------------SS-----
-------SSSSSSS----S-----------S-----------------------S---SS----------S---------
--------------S---S-------------------------------------------------------------
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---------------------S----------------------------------------------------------
---------------------------------------------------------------S----S-----------
-----------------------------------S--------------------------------------------
--------------------------------------------------------------------------S-----
---------------------------------------------------------------------S------S-S-
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------------------------------------------------S------------------
>forward_292
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--------------------------------CGTTTTGCGGGTCGAGTTTT----------------------------
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>reverse_1254
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-----------------------------------------------------GGTGATCACTGTGCAGGTGA-------
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>forward_295
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-----------------------------------TTTGCGGGTCGAGTTTTTGC-------------------------
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>reverse_2064
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---------------------------------------------------------------CCGAGCACTGTTGTACG
ACA-----------------------------------------------------------------------------
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