>input_sequence_84271
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-----------------------------------------------------------------ATGTCTGGGCGTGGC
AAGGGCGGCAAGGGGCTCGGCAAGGGCGGCGCCAAGCGCCACCGGAAGGTGCTCCGGGACAACATCCAGGGCATCACCAA
GCCGGCGATCCGGAGGCTGGCCAGGAGGGGCGGTGTGAAGCGCATCTCGGGGCTCATCTACGAGGAGACCCGCGGCGTCC
TCAAGATCTTCCTCGAGAACGTCATCCGCGACGCCGTCACCTACACCGAGCACGCCCGCCGCAAGACCGTCACCGCCATG
GACGTCGTGTACGCCCTCAAGCGCCAGGGCCGCACCCTCTACGGCTTCGGCGGCTGA-----------------------
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>chr6D_1_TraesCS6D01G241500
GAATCCGATACTGGTCAAATCAAATTCGGCTTTTCGATTGTGCCAACAGAATTTTGTTGCATTTATTCAACTAACCAAAA
ATTTAGTTTTGTTTTCGGTTTGGGTTCAGTTTTCGGCTCCTCGGTTTTTATGCCCACCCTGAGCCCGTTGGAGACGCTCA
CTTTAACAAAAAATACTACTCCCTTCGATTCGAATTAATTGACTCATCCTCTATATTTGTATAGAGGATGCGTCATCGAA
GGGAGTAAAAGATTACTAACTGAATGGATAACTTTTATGTAGACCACAAAAAAATTCACAACCAATCAGAAAGCCCAAAA
TATCATAGGGTGTCAAAATTTTGACAAGGGTGCATTTGGGTACCAACCAAGCACCGTAATTCTTCCTTTTTCCG-ACTGA
AAAACTGAGTTTTCCCCGAAAGAGAAGTCTCAGTGATTTTTTTGTTGATAACTGACCCCAACGAGCTAATGAGTT-----
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--------------------------------------------------------------------------TCACCC
GAAAAAAAA--GAGCTAATGATTTTAGCAAGCAATTTGGAAGATAG-AAAA-AAAAGCAGTACCATCATTTTTGCATCGA
GCCACGAGGCC---CGTCCAAGCAGCGCGCCCCTGTTACTCGA---AAAA--AAAAGCAGCGTGCCCCATGGACGTCGTT
GGCCACTCGACAGTCGACACAACTGTAGCCACGTCACCTATCCGCGCCGAACCCTGTTCCGAATCTACCTCCATCCATCT
CGCATCCGACGGCAACCAACCCCCCTCCCACGGATCGCTCCCTCCGCGCCATCGATCAACAGAAGGAACG--CCCCTCGC
ATCCCAATCCGACGTCTCAAACGAATCCTTCCAACGAAGCCCATCCCGTGAAAACCGAAATCCTCCCGC--TCAAACCCC
AAACCAGATCCCCA--------CCCCGCCTCCCAAATCCCCC-GCTCGCCTATAAATCTCACCCCCAATCCGCATCACCT
CCTCACCAAACTCCACAGCGACTCCAAATCTCTCGTGGTAGACAGCTTCCATCTCATCTCCGGCGATGTCTGGGCGTGGC
AAGGGCGGCAAGGGGCTCGGCAAGGGCGGCGCCAAGCGCCACCGGAAGGTGCTCCGGGACAACATCCAGGGCATCACCAA
GCCGGCGATCCGGAGGCTGGCCAGGAGGGGCGGTGTGAAGCGCATCTCGGGGCTCATCTACGAGGAGACCCGCGGCGTCC
TCAAGATCTTCCTCGAGAACGTCATCCGCGACGCCGTCACCTACACCGAGCACGCCCGCCGCAAGACCGTCACCGCCATG
GACGTCGTGTACGCCCTCAAGCGCCAGGGCCGCACCCTCTACGGCTTCGGCGGCTGAGCGCCATCAGCGCGCTGCCGCTG
GCTGACACTGCTGTTTCCTGCTTTGCTCTGTAGTCTTACTCCCCCCCGTCGTGAATCCAGTGCG----------------
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-------------------------------------------------CTGGCTATGCTTGTTTCTGTAGTTTGTCTAG
TGAGATCCAACTTCTAGTTGTAACTCCTATCGTTTCGTTTCGCTGCAATGAAAAGTTAATTCCAATCTGAGAAAAAC-AT
CATGTCTGCTTATG-TTTGTTTAATATCGGCTTCTAGTATTGGAGGAATTGAAGAAATCGAGTGACAGCTGAAGTTAAAT
CTTTT-GTGTATAGAGCTGGAAGAACCCTGCAGTTTGGTTCTGCAGAGTGGTAGATTCAATCTCAACGCTTTATGGGTTT
GTGTTCCTTTGTTTTACTATGGCTTTGGTCCGCACTGT-AGTTGTCTAGTTCTGCAT------TTTT--TTTTCAACCTT
GTTTCATTCTGGTA-GAAAATATGCAACTGGAACATCATCAACTTTTGTGGGAAATCCTGATCTTGACATTGTGAACAAT
TCATCCTGGAATTCTTCTCTGATCTCCAATAAAGAGAAAAAAAACTTGGTCCAATTTATTTGTCTGAAAATAATCGGGTG
TGACCCACAAAGAATTGCTCTGGTTCCATATTTTTTAT-GG-TGGTTCCTCTTGTTTTTCAAATTTATTTATTTA-----
-------------------------------------------------CATTCCACTAGAGTTTTAGTTTGCTGAAGCC
ACAGGCTTACAAATCTGTCACTAGGATA---------------ATACTAGTAACCATACGTTTGTTGTCAGTGTTCAGAG
GCAGATTAGAAGCGTGTTGACTGGTTCCTGTGGATAACAGTAATCGATTAGTCGCAGTGATGAAGCCGGTCTCCAGCTGT
AGGAAACCACAGCTACATATGTAGTACTCATAAGCAGATGAGCAGCCACTAGAACTCTAGAATAGATCGTAAAGCTCGTG
CAGCAACAGATGGTTATTTGACAGAAACAAAAGTTAGTAAGAGCAACTCCAACGGACCGATCCAAACGGACGGCGTTTTT
GTCCGC
>chr6A_1
GAATCCGGTAATGGTCCAATCAAATTCAGCCTTTTGAATGTGCTAACAAAATTTTGTTGCATTTACTGAACTAACCAAAA
TTTTAGTTTTGTTTTCGGTTTGGGTTCAATTTTCGGCTCCTTGGCTTTTATGCCCACCCTGAGCCCAAC-----------
--------AAAAATACTACTCCCTCCTATTCGAATTAATTGAAGCATCCTCTATA-TTGTATTGAGGATCCGTCATGGAA
CGGAGTAAAAGATTACTAACTGAATGAATAACTTTTATGTAGACAACAAAAAAATTCACAACCAATAAGAAAGCCCAAAA
TATCATA-GGTGTCAAAATTTTGACAAGGGTGCACTTGGGTACCAACCCAGCACCATAAATCTTCATTTTTTCCAACTGA
AAAACAGAGTTTTCCCCGAAAGAGAAGTCTCAGTGATTTTTCTGTTGATAGCTGACCCCAACGAGCTAATGAGTTTTGCC
GAAAAAGGGTTTCCCCCGCTTTGTATACAAAGCAACCAATCGATACATCCAACGATAGGTGTTGGGGCGGAAGCAGCACA
GTCACGCCCAAAATAAAAGAAAGAAAAAATACAAGAGAAACTAATGCCAACAGCGACGAATCGACAAAAAACGAAGAAGC
CTCGTGGCCGCTGCCCCCACCGGAGATCACCCACCAAGCTCCGAGCCTCCGAAGCGCCGGTACCAATTAGCACCTCCAAG
AAGGGACACGGCGATGATGACACTGCTGCCAAGGGTTTCCCCCGGTACGATGTGAGGAGAGAGGAAGGGTAGCCCCGACG
TCCTTCAGGAAGGTCGGGCGGTACCCACAAGCGCCACCGCGTTAGTGTCAGTCAAGCCAACAGGGATTTCTCCCGATCCC
AACGTCCACCTCAGGCACTCCAGATCTCGCCACCAAACAGACCCTCACCCTGCGCCAAACCGGTCACGGAGCTTCTCACG
CCGTCTCACCACGACACCGTGAAGCATGGTCCGCACAAAGGAGGAGAGGAGCCGGGACTAGGGCGGCTGCACCGTCGGCA
CGCGGGAGGGCCCCACCTCCACCATCGAAGACGGTAGCTGACCGGACGCAATAGCAGGACCGTACCAGGCCCGTGGCCGC
ACAGGCCTAGCTGGGATCTCCGAGGCCCGTAAAGTTCCCGCCTTCGCGCTGCACCCGGCACGCCGTCGACGCCGCCGCCC
CTGTCCAAGCCGCTCCCCTGCCGCCCCGCATAGAGAGCCGCCATGTGAAAGCACCACCACCATGCGTGCCGCCGGCCACC
ACCACCAGGTCGCCGGACCGCCACCGGCCGAGCCGCACCACCACCGCACGCCCGCGACGGAGAGGAACCAACGCAGCCGC
AGGGGCCCCGAAGCCGGACCCCAATCGCCACCCACGCCGCCTGTCGGACGGAACCGGCCGCCACGGCGAGGCACACACCA
CCGCACAGCCAGCCACGCCGCGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGCTTCGCCCG
GCCGCGCTCCCTGGCGGCGGCGAGGGAGGAGGGAGGAGGAGGGGAGGCTTGCGGCGAGCGGATCTGGGGGCCCTCGTCGG
CCGCCTCGCGGGTGGCGGCGCAGGGAGGGAAACCTAGGGAGGAGGAGGGGGATCTGGACCATAGCTAATGAGTTTCACCC
CCCAAAAAA--GAGCTAATGATTTTAGCAAGCAATTTGGAAGATAGAAAAA-AAAAGCAGTGCCATCATTTTTGTATGGA
GCCACGA------TCGTCCAAGCAGTGCGCCCCTGTTACTCAAAAGAAAA--AAAAGCAGCGTGCCCCGTGGACGTCGTT
GGCCACTCT-------ACACAACTGTAGCCACGTCACCGATCCGCGCCGAACCCAGTTCCGGATCTGCCACCATCCATCT
CGCATCCGACGCCAACAAACCCCCCTCCCACGGATCGCTCCCTCCGCGCCACCGATCAACAGAAGGAACGCCCCCCTCGG
ATCCCAATCCGACGTCTCAGACGAATCCTTCCAGCGAAACCCATCCCGTGAAAACCGAAATCCTCCCGC--TCAAACCCC
AAACCAGCACCCCCGCCCGCGCCCCCGCCCCCCAAATCCCCC-GCTCGCCTATAAATCCCACCCCAAACCCGCATCACCT
CCACACCAAACTCCACAGCGACTCCAAGTTTCCCTCGGTAGGCAGCTTCCATCTCATCTCCGGCGATGTCTGGGCGCGGC
AAGGGCGGCAAGGGGCTCGGCAAGGGCGGCGCCAAGCGCCACCGGAAGGTGCTCCGCGACAACATCCAGGGCATCACCAA
GCCGGCGATCCGGAGGCTGGCGAGGAGGGGCGGCGTGAAGCGCATCTCGGGGCTCATCTACGAGGAGACCCGCGGCGTCC
TCAAGATCTTCCTCGAGAACGTCATCCGCGACGCCGTCACCTACACCGAGCACGCCCGCCGCAAGACCGTCACCGCCATG
GACGTCGTCTACGCCCTCAAGCGCCAGGGCCGCACCCTCTACGGCTTCGGCGGCTGAGCGCCGTGAGCT------CGCCG
GCTGACCCTGCTGTTTCCTGCGTGGCTGCGTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGGCTATGTCTGTTTCTGTAGTTTGTCTAG
TGAGATCCAACTTCTAGTTGTAACTCCTATCGTTTCGTTTCGCTGCAATGACAAGTTAATTCCAATCTGAGAAAAAC-AT
CGTGTCTGCTCATGCTTTTTTTAATATCGGCTTTTAGTATCGGAGGAATTGAAGCAATCGAGTGACAGCTCAAGTTAAAT
CTTACGGTGTATAGAACTGGAAGAACCCTGCAGTTTGGTTCTGCAGAGTGGTAAAATCTATCTTGAC-------------
-----CCTTTATTTTATTTTGGCTTTGATTCGTACTGTCAGTTGGCTAGTACTGCATTTTGTTTTTT--CTTCCAACCTT
GTTTCATTCTAGTA-GAAAATATGGAAGTGGAACAGCATCAACTTTTGTGGGAAATCCTGATCTTACATCA-TG-ACAAT
TCATCCTGGAACTCTTCTCTGATCTCCAATAAAGAG--AAAAAACTTGGCCCAATTTATTTGTCTGAAAATCATTGGGTG
CGACCCACAAAGAATTGCTCTGGTTCCTTCATTTTTTT-GGGCGGTTCCTCTTGTTTTTCAAATTTATTTATTTATTTAT
TGTCGTTGATCCGTCTTTGCCAAAGAAATTACGTTAGCGCATGTATGAATATTCCACTACAGTTTTAGTTTGCTGAAGCC
ACAAGCTTACAAATCTGTCACTACAGTTTGATATGTGGCTAGCATAATAGTAACCATACGTTTGTTGTCAGTGTTCAGAA
GCAGATTGGAAGCGTGTTGACTGGTTCCTGTGGATAAGAGTAATCGATTAGTCGCCCTGATGAAGCCGGTCTCCAGCTGT
AACAATAGC--------TATGTAGTACTCCTAAGCAGGCGAGCAGCCACTAGAGCTCTAGAAGAGATCGTAAACCTCGTG
CAGCAACAGATGGTTATTTGACAGAAACAAAAGCTAGCAAG---------------------------------------
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>chr6B_2
-AATCCGATACTAGTCCAATCAAATCCACCTTTTTGAGCGTGCTAATAGAATTTTGTTGCATTTATTCAGCTAACTAAAA
ATTCAGTTTTGTTTTCGATTTGGGTTCAGTTTTCGGCTCCTCGGTTTTTATGCCCACCCTCAGCGTGTTGGTGACACTCA
CTTTAACAAAAATTACTTCTCCCTTCGATTCGAATTAATTGACGCA--------------------------TCATCGAA
GGGAGTAAAAGATTACTAACTGAACGGATAACTTTTATGTAGACAACAAAAAAATTCACAACCAATCAGAAAGCCCAAAA
TATCATATAGTGTCAAAATTTTGACAAGGGTGCATTTGAGTACCAACCAAGCACTATAAATCTACCTTTTTTCG-ACCGA
AAAACTGAGTTTTCCCGGAAAGAGAAGTCTCAGTGAGTTTTTTGTTGATGGCTGACCCGAGCGAGCTAAGGGCATGTACA
ATGGTTGATAAGACAGTCTTATCTTAAATCTTGCATGTAATTTAGAGAT-------------------------------
--------------------------------------------------------------GACAAAAAAATATGTCTA
CAATGGGTTATATCTTAGCCTTATCTTCAATAACTAGCAATTCCTTAAAACATGGTGAGACAAATTGTGCTAAGAGATCA
TCTCTTGTCTTATCTTAAATAAGAGAAGACAAGGCTTTTCTTATGAGTTCTCTCTCC-----------------------
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----TCCACCTCATCATTTATCCTACGTGGCACTCCTAAGATAGCACCATTGTACATGCC--------------------
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----------------------------------------------------------------CTAATGAGTTTCGCGC
GAAAAAAAAACGAGCTAATGATTTTAGCAAGCAATTTGGAAGATAGAAAAAGAAAAGCAGTACCATCATTTTTGCATCGT
GCCACGAGGCCCGTCGTCCAAGCAGCGCGCCCCTGTTACTAAAAAAAGAAGGAAAAGCAGCGTGCCCCAGGGACGTTGTT
GGCCACTCT-------ACACAACTGTAGCCACGTCACCGATCCGCGCCGAACCCAGCTCCGAATCTACCTCTATCCATCT
CGCATCCGACGGCAACCAACCCCCCTCCCACGGATCCCTCCCTCCGCGCCAGCGATCAACAGAAATACCA--CCCCTCAG
ATCCCAATCCGACGTCTCAAACGTATCCTTCCAACGAAACCCATCCCGTGAAAACCGAAATCCTCCCGCCCTCAAACCCC
AAACCAGCACCCCC-----CGCCCCCGCCTCCCAAATCCCCCCGCTCGCCTATAAATCTCACCCCAAATCCGCATCACCT
CCTCACCAAGCTCAACAGCGACTCCCATTATCCCCTGTTAGACTGCTTCCATCTCATCTCCGGCGATGTCTGGGCGTGGC
AAGGGCGGCAAGGGGCTCGGCAAGGGCGGCGCCAAGCGCCACCGGAAGGTGCTCCGCGACAACATCCAGGGCATCACCAA
GCCGGCGATCCGGAGGCTGGCGAGGAGGGGCGGCGTGAAGCGCATCTCGGGGCTCATCTACGAGGAGACCCGCGGCGTCC
TCAAGATCTTCCTCGAGAACGTCATCCGCGACGCCGTCACCTACACCGAGCACGCCCGTCGCAAGACCGTCACCGCCATG
GACGTCGTGTACGCCCTCAAGCGCCAGGGCCGCACCCTCTACGGCTTTGGCGGCTGAGCGCCATCAGCT------CGCTG
GCTGACCCTGCTGTTTCCTGCGTTGCTCTGTAGTCGTA-TCCCCCCTGTCGTGAATCTAGTGCG----------------
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-------------------------------------------------CTGGCTATGCTTGTTTCTGTAGTTTGTCTAG
TGAAATCCAACTTCTAGTTGTAACTCCTATCGTTTCCTTTCGTTGCAATGACAAGTTAATTCCAATCTCAGAAAAACCAT
CATGTCTGATTCTG-CTTTTTTAATATCGGCTTCTAGTATCGGAGGAATTGAACAAATCTAGTGAT--CTCAAGTTAAAT
CTTATAGTGTATAGAACTGCAAGAACCCTGCAGTTTGGTTCCGAAGAGTGGTAAATTCAGTCTCGACGCTTTATGGGTTT
GTGTTCCTTTGTTTTATTTTGGTTTTGATCCGTACTGTCAGTTGGCTACTTCTGCAA------TTTT--TTTTCAACCTT
GTTTCATTCTGGTA-GAAAATATGGAACTGGAACACCATCAACTTATATGGGAAATCCTGATGTTGACATTGTG-ACAAT
TCATCCTGGAATTCTTCTCTGATCTCCAATAAAGAG--AAAAAACTTGGCCCAATTTATTTGTTTGCAAGTCATCGGTTG
TGACCCCCAAAGAATTGCTCTGGTTCCTTAATTTTTTTATGGCGGTTCCTCTTGTTTTTCAAATTTATTTATTTATTTAT
TATCGTTGATCCGTCTTTACCAAAGAAATCTCGTTTGCGCATGTATGAACATTCCACTACAGTTTTAGTTTGCTGAAGCC
ACAAGCTTACAAATCTGTTACTACAGTTTGATATGTGACTAGGATAATATTAACAGTACGT---TTGTCAGTGTTCAGAA
GCAGATTAGATGCGTGTTGACTGGTTCCTGTGGATAAGAGTAATCGATTAGTGGCACTGATGAAGCCGGTCTCCAGCTGT
AACCATAGC--------AATGTAGTACTCCTAAGCAGACGAGCAGCCACAAGAGCTCTAGAAGAGATCGTAAACCTCGTG
CAGCAACAGATGGTTATTTGACAGAAACAAAAGTTAGTAAG---------------------------------------
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>chr6D_1395
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-----------------------------------------------------------GTGCG----------------
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-------------------------------------------------CTGGCTATGCTTGTTTCTGTATTTTGTCTAG
TGAGATCTAACTTCTAGTTGTAACTCCTATCGTTTCGCTTCGCCTTAATGAAAAGTTAATTCCAATCTGAGAAAAAC-AT
CATGTATGCTTATG-TTTTTTTAATATCGGCCTCTAGTATCAGAGGA---------------------------------
---ATAGCGTATAGAACTGGAATAACCCTGCAGTTTGGTTCCGCAGAGTGCTAAATTCAATCTCGACACTTTATGGGTTT
GTGTTCCTTTGTTTTATTTTGCTTTTGATCTGTACTGTCAGTTGGCTAGTTCTGCAT------TTGTCCTTTTTAACCTT
GTTTCATATTGGTAGGAAAATATGGAACTGGAACATCATCAACTTTTGTGGGAAATACTGATCTTGACAATGTG-ACAAT
TCATCCTGGGACTCTTCTCTGATCTCCAATAAAGAG--AAAATACTTTGCCCAATTTATTTGTGTGCAAATCATCGGGTG
TGACCCACAAAGAATCGCTCTGGTTCCTTA-TTTTTTTAGGGTGGTTCCTCTTGTTTTT---------------------
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>SNPs
----------------S----------S------S--S-----S------------------------------------
-----------------------------------------------------------------------S---S----
-------------------------------------------S-----------S------S------S----------
--------------------------------------------S-----------------------------------
-------S-----------------------------------------------S---S-----------S--------
--------------------------------------------------S-----------------------------
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-----------------------------------------S--------------------------------------
--------SSSSSSSS----------------------S---------------S-------------------------
---------------------------------------------------S---------------------------S
--------------------------------------S-----------------------------------------
-------SS----S---------------------------------------------------S--------------
---------------------------S-S--S-S---------------------------------------------
--------------------------------------------------------S-----------------------
---------------------S-----------S----------------------------------------------
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--------------------------------------------------------------------SSSSSSS-----
------S--------------S-------------S--S-------S----------S----------------------
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------------------S---------------------S-----------------------------S---------
---S-----------S-------------------------------------S----------S---------------
----------------S-S--------S----S-----------S-----------------------------------
------------------------S-------------------------------------------------S-----
------------------------------------SS-----------S---------------------S--------
---------------------------S--S-----S-------------------------------------------
-----------------------------------------------------------S--------------------
---S-------------------SSS-S------------------S--------------------------------S
-------------------------------------S------------------S-----------------------
-SS--SSSSSSSSSSSS------------S--------S--------------S--------S----------S------
-----------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSS
>forward_2199
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-------------------CAACTGTAGCCACGTCACCT-----------------------------------------
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>reverse_3537
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----------------CTATGGCTTTGGTCCGCACT--------------------------------------------
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