>input_sequence_84267
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----------------------------------------------------------ATGTCTGGGCGTGGCAAGGGCG
GCAAGGGGCTCGGCAAGGGCGGCGCCAAGCGCCACCGGAAGGTGCTCCGCGACAACATCCAGGGCATCACCAAGCCGGCG
ATCCGGAGGCTGGCGAGGAGGGGCGGCGTGAAGCGCATCTCGGGGCTCATCTACGAGGAGACCCGCGGCGTCCTCAAGAT
CTTCCTCGAGAACGTCATCCGCGACGCCGTCACCTACACCGAGCACGCCCGTCGCAAGACCGTCACCGCCATGGACGTCG
TGTACGCCCTCAAGCGCCAGGGCCGCACCCTCTACGGCTTTGGCGGCTGA------------------------------
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>chr6B_1_TraesCS6B01G288000
CAAAAAAATTCACAACCAATCAGAAAGCCCAAAATATCATATAGTGTCAAAATTTTGACAAGGGTGCATTTGAGTACCAA
CCAAGCACTATAAATCTACCTTTTTTCGACCGAAAAACTGAGTTTTCCCGGAAAGAGAAGTCTCAGTGAGTTTTTTGTTG
ATGGCTGACCCGAGCGAGCTAAGGGCATGTACAATGGTTGATAAGACAGTCTTATCTTAAATCTTGCATGTAATTTAGAG
ATGACAAAAAAATATGTCTACAATGGGTTATATCTTAGCCTTATCTTCAATAACTAGCAATTCCTTAAAACATGGTGAGA
CAAATTGTGCTAAGAGATCATCTCTTGTCTTATCTTAAATAAGAGAAGACAAGGCTTTTCTTATGAGTTCTCTCTCCTCC
ACCTCATCATTTATCCTACGTGGCACTCCTAAGATAGCACCATTGTACATGCCCTAATGAGTTTCGCGCGAAAAAAAAAC
GAGCTAATGATTTTAGCAAGCAATTTGGAAGATAG-AAAAAGAAAAGCAGTACCATCATTTTTGCATCGTGCCACGAGGC
CCGTCGTCCAAGCAGCGCGCCCCTGTTACTAAA---AAAAGAAGGAAAAGCAGCGTGCCCCAGGGACGTTGTTGGCCACT
CT-------ACACAACTGTAGCCACGTCACCGATCCGCGCCGAACCCAGCTCCGAATCTACCTCTATCCATCTCGCATCC
GACGGCAACCAACCCCCCTCCCACGGATCCCTCCCTCCGCGCCAGCGATCAACAGAAATACCA--CCCCTCAGATCCCAA
TCCGACGTCTCAAACGTATCCTTCCAACGAAACCCATCCCGTGAAAACCGAAATCCTCCCGCCCTCAAACCCCAAACCAG
CACCCCC-----CGCCCCCGCCTCCCAAATCCCCCCGCTCGCCTATAAATCTCACCCCAAATCCGCATCACCTCCTCACC
AAGCTCAACAGCGACTCCCATTATCCCCTGTTAGACTGCTTCCATCTCATCTCCGGCGATGTCTGGGCGTGGCAAGGGCG
GCAAGGGGCTCGGCAAGGGCGGCGCCAAGCGCCACCGGAAGGTGCTCCGCGACAACATCCAGGGCATCACCAAGCCGGCG
ATCCGGAGGCTGGCGAGGAGGGGCGGCGTGAAGCGCATCTCGGGGCTCATCTACGAGGAGACCCGCGGCGTCCTCAAGAT
CTTCCTCGAGAACGTCATCCGCGACGCCGTCACCTACACCGAGCACGCCCGTCGCAAGACCGTCACCGCCATGGACGTCG
TGTACGCCCTCAAGCGCCAGGGCCGCACCCTCTACGGCTTTGGCGGCTGAGCGCCATCAGCT------CGCTGGCTGACC
CTGCTGTTTCCTGCGTTGCTCTGTAGTCGTA-TCCCCCCTGTCGTGAATCTAGTGCG-----------------------
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------------------------------------------CTGGCTATGCTTGTTTCTGTAGTTTGTCTAGTGAAATC
CAACTTCTAGTTGTAACTCCTATCGTTTCCTTTCGTTGCAATGACAAGTTAATTCCAATCTCAGAAAAACCATCATGTCT
GATTCTG-CTTTTTTAATATCGGCTTCTAGTATCGGAGGAATTGAACAAATCTAGTGAT--CTCAAGTTAAATCTTATAG
TGTATAGAACTGCAAGAACCCTGCAGTTTGGTTCCGAAGAGTGGTAAATTCAGTCTCGACGCTTTATGGGTTTGTGTTCC
TTTGTTTTATTTTGGTTTTGATCCGTACTGTCAGTTGGCTACTTCTGCAA------TTTTTTTTCAACCTTGTTTCATTC
TGGTA-GAAAATATGGAACTGGAACACCATCAACTTATATGGGAAATCCTGATGTTGACATTGTG-ACAATTCATCCTGG
AATTCTTCTCTGATCTCCAATAAAGAG--AAAAAACTTGGCCCAATTTATTTGTTTGCAAGTCATCGGTTGTGACCCCCA
AAGAATTGCTCTGGTTCCTTAATTTTTTTATGG-CGGTTCCTCTTGTTTTTCAAATTTATTTATTTATTTATTATCGTTG
ATCCGTCTTTACCAAAGAAATCTCGTTTGCGCATGTATGAACATTCCACTACAGTTTTAGTTTGCTGAAGCCACAAGCTT
ACAAATCTGTTACTACAGTTTGATATGTGACTAGGATAATATTAACAGTACGT---TTGTCAGTGTTCAGAAGCAGATTA
GATGCGTGTTGACTGGTTCCTGTGGATAAGAGTAATCGATTAGTGGCACTGATGAAGCCGGTCTCCAGCTGTAACCATAG
C--------AATGTAGTACTCCTAAGCAGACGAGCAGCCACAAGAGCTCTAGAAGAGATCGTAAACCTCGTGCAGCAACA
GATGGTTATTTGACAGAAACAAAAGTT
>chr6D_1
CAAAAAAATTCACAACCAATCAGAAAGCCCAAAATATCATAGGGTGTCAAAATTTTGACAAGGGTGCATTTGGGTACCAA
CCAAGCACCGTAATTCTTCCTTTTTCCGACTGAAAAACTGAGTTTTCCCCGAAAGAGAAGTCTCAGTGATTTTTTTGTTG
ATAACTGACCCCAACGAG--------------------------------------------------------------
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-----------------------------------------------------CTAATGAGTTTCACCCGAAAAAAAA--
GAGCTAATGATTTTAGCAAGCAATTTGGAAGATAG-AAAAA--AAAGCAGTACCATCATTTTTGCATCGAGCCACGAGGC
CCG---TCCAAGCAGCGCGCCCCTGTTACTCGA---AAAA-----AAAAGCAGCGTGCCCCATGGACGTCGTTGGCCACT
CGACAGTCGACACAACTGTAGCCACGTCACCTATCCGCGCCGAACCCTGTTCCGAATCTACCTCCATCCATCTCGCATCC
GACGGCAACCAACCCCCCTCCCACGGATCGCTCCCTCCGCGCCATCGATCAACAGAAGGAACG--CCCCTCGCATCCCAA
TCCGACGTCTCAAACGAATCCTTCCAACGAAGCCCATCCCGTGAAAACCGAAATCCTCCCGC--TCAAACCCCAAACCAG
ATCCCCA--------CCCCGCCTCCCAAAT-CCCCCGCTCGCCTATAAATCTCACCCCCAATCCGCATCACCTCCTCACC
AAACTCCACAGCGACTCCAAATCTCTCGTGGTAGACAGCTTCCATCTCATCTCCGGCGATGTCTGGGCGTGGCAAGGGCG
GCAAGGGGCTCGGCAAGGGCGGCGCCAAGCGCCACCGGAAGGTGCTCCGGGACAACATCCAGGGCATCACCAAGCCGGCG
ATCCGGAGGCTGGCCAGGAGGGGCGGTGTGAAGCGCATCTCGGGGCTCATCTACGAGGAGACCCGCGGCGTCCTCAAGAT
CTTCCTCGAGAACGTCATCCGCGACGCCGTCACCTACACCGAGCACGCCCGCCGCAAGACCGTCACCGCCATGGACGTCG
TGTACGCCCTCAAGCGCCAGGGCCGCACCCTCTACGGCTTCGGCGGCTGAGCGCCATCAGCGCGCTGCCGCTGGCTGACA
CTGCTGTTTCCTGCTTTGCTCTGTAGTCTTACTCCCCCCCGTCGTGAATCCAGTGCG-----------------------
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------------------------------------------CTGGCTATGCTTGTTTCTGTAGTTTGTCTAGTGAGATC
CAACTTCTAGTTGTAACTCCTATCGTTTCGTTTCGCTGCAATGAAAAGTTAATTCCAATCTGAGAAAAAC-ATCATGTCT
GCTTATG-TTTGTTTAATATCGGCTTCTAGTATTGGAGGAATTGAAGAAATCGAGTGACAGCTGAAGTTAAATCTTTT-G
TGTATAGAGCTGGAAGAACCCTGCAGTTTGGTTCTGCAGAGTGGTAGATTCAATCTCAACGCTTTATGGGTTTGTGTTCC
TTTGTTTTACTATGGCTTTGGTCCGCACTGT-AGTTGTCTAGTTCTGCAT------TTTTTTTTCAACCTTGTTTCATTC
TGGTA-GAAAATATGCAACTGGAACATCATCAACTTTTGTGGGAAATCCTGATCTTGACATTGTGAACAATTCATCCTGG
AATTCTTCTCTGATCTCCAATAAAGAGAAAAAAAACTTGGTCCAATTTATTTGTCTGAAAATAATCGGGTGTGACCCACA
AAGAATTGCTCTGGTTCCATATTT--TTTATGG-TGGTTCCTCTTGTTTTTCAAATTTATTTATTTA-------------
-----------------------------------------CATTCCACTAGAGTTTTAGTTTGCTGAAGCCACAGGCTT
ACAAATCTGTCACTAGGATA---------------ATACTAGTAACCATACGTTTGTTGTCAGTGTTCAGAGGCAGATTA
GAAGCGTGTTGACTGGTTCCTGTGGATAACAGTAATCGATTAGTCGCAGTGATGAAGCCGGTCTCCAGCTGTAGGAAACC
ACAGCTACATATGTAGTACTCATAAGCAGATGAGCAGCCACTAGAACTCTAGAATAGATCGTAAAGCTCGTGCAGCAACA
GATGGTTATTTGACAGAAACAAAAGTT
>chr6A_454
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-----------------------------------------------------CTAATGAGTTTCACCCCCCAAAAAA--
GAGCTAATGATTTTAGCAAGCAATTTGGAAGATAGAAAAAA--AAAGCAGTGCCATCATTTTTGTATGGAGCCACGAT--
-CG---TCCAAGCAGTGCGCCCCTGTTACTCAAAAGAAAA-----AAAAGCAGCGTGCCCCGTGGACGTCGTTGGCCACT
CT-------ACACAACTGTAGCCACGTCACCGATCCGCGCCGAACCCAGTTCCGGATCTGCCACCATCCATCTCGCATCC
GACGCCAACAAACCCCCCTCCCACGGATCGCTCCCTCCGCGCCACCGATCAACAGAAGGAACGCCCCCCTCGGATCCCAA
TCCGACGTCTCAGACGAATCCTTCCAGCGAAACCCATCCCGTGAAAACCGAAATCCTCCCGC--TCAAACCCCAAACCAG
CACCCCCGCCCGCGCCCCCGCCCCCCAAAT-CCCCCGCTCGCCTATAAATCCCACCCCAAACCCGCATCACCTCCACACC
AAACTCCACAGCGACTCCAAGTTTCCCTCGGTAGGCAGCTTCCATCTCATCTCCGGCGATGTCTGGGCGCGGCAAGGGCG
GCAAGGGGCTCGGCAAGGGCGGCGCCAAGCGCCACCGGAAGGTGCTCCGCGACAACATCCAGGGCATCACCAAGCCGGCG
ATCCGGAGGCTGGCGAGGAGGGGCGGCGTGAAGCGCATCTCGGGGCTCATCTACGAGGAGACCCGCGGCGTCCTCAAGAT
CTTCCTCGAGAACGTCATCCGCGACGCCGTCACCTACACCGAGCACGCCCGCCGCAAGACCGTCACCGCCATGGACGTCG
TCTACGCCCTCAAGCGCCAGGGCCGCACCCTCTACGGCTTCGGCGGCTGAGCGCCGTGAGCT------CGCCGGCTGACC
CTGCTGTTTCCTGCGTGGCTGCGTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGGCTATGTCTGTTTCTGTAGTTTGTCTAGTGAGATC
CAACTTCTAGTTGTAACTCCTATCGTTTCGTTTCGCTGCAATGACAAGTTAATTCCAATCTGAGAAAAAC-ATCGTGTCT
GCTCATGCTTTTTTTAATATCGGCTTTTAGTATCGGAGGAATTGAAGCAATCGAGTGACAGCTCAAGTTAAATCTTACGG
TGTATAGAACTGGAAGAACCCTGCAGTTTGGTTCTGCAGAGTGGTAAAATCTATCTTGAC------------------CC
TTTATTTTATTTTGGCTTTGATTCGTACTGTCAGTTGGCTAGTACTGCATTTTGTTTTTTCTTCCAACCTTGTTTCATTC
TAGTA-GAAAATATGGAAGTGGAACAGCATCAACTTTTGTGGGAAATCCTGATCTTACATCA-TG-ACAATTCATCCTGG
AACTCTTCTCTGATCTCCAATAAAGAG--AAAAAACTTGGCCCAATTTATTTGTCTGAAAATCATTGGGTGCGACCCACA
AAGAATTGCTCTGGTTCCTTCATT--TTTTTGGGCGGTTCCTCTTGTTTTTCAAATTTATTTATTTATTTATTGTCGTTG
ATCCGTCTTTGCCAAAGAAATTACGTTAGCGCATGTATGAATATTCCACTACAGTTTTAGTTTGCTGAAGCCACAAGCTT
ACAAATCTGTCACTACAGTTTGATATGTGGCTAGCATAATAGTAACCATACGTTTGTTGTCAGTGTTCAGAAGCAGATTG
GAAGCGTGTTGACTGGTTCCTGTGGATAAGAGTAATCGATTAGTCGCCCTGATGAAGCCGGTCTCCAGCTGTAACAATAG
C--------TATGTAGTACTCCTAAGCAGGCGAGCAGCCACTAGAGCTCTAGAAGAGATCGTAAACCTCGTGCAGCAACA
GATGGTTATTTGACAGAAACAAAAG--
>chr6D_1385
CTC-----------------------------------------------------------------------------
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----------------------------------------------------GTGCG-----------------------
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------------------------------------------CTGGCTATGCTTGTTTCTGTATTTTGTCTAGTGAGATC
TAACTTCTAGTTGTAACTCCTATCGTTTCGCTTCGCCTTAATGAAAAGTTAATTCCAATCTGAGAAAAAC-ATCATGTAT
GCTTATG-TTTTTTTAATATCGGCCTCTAGTATCAGAGGAAT------------------------------------AG
CGTATAGAACTGGAATAACCCTGCAGTTTGGTTCCGCAGAGTGCTAAATTCAATCTCGACACTTTATGGGTTTGTGTTCC
TTTGTTTTATTTTGCTTTTGATCTGTACTGTCAGTTGGCTAGTTCTGCATTTGTCC----TTTTTAACCTTGTTTCATAT
TGGTAGGAAAATATGGAACTGGAACATCATCAACTTTTGTGGGAAATACTGATCTTGACAATGTG-ACAATTCATCCTGG
GACTCTTCTCTGATCTCCAATAAAGAG--AAAATACTTTGCCCAATTTATTTGTGTGCAAATCATCGGGTGTGACCCACA
AAGAATCGCTCTGGTTCCTTATTT--TTTTAGGGTGGTTCCTCTTGTTTTT-----------------------------
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>SNPs
-----------------------------------------SS-----------------------------S-------
--------SS---S---S-------S----S------------------S-------------------S----------
--SS-------S-S----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------S-S----------SS
-----------------------------------------SS--------------------------S----------
---SSS------------------------S---------SSSSS-----------------S------S----------
-------------------------------------------------S--------------S---------------
-----------------------------S--------------S------------SS-S-S--------S--------
----------------S---------------------------------------------SS----------------
------------------------------S-------------------------------------------------
--S---S-----------S-S-S----S--S-----S-------------------------------------------
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---------------------------------------------------S----------------------------
----------------------------------------S---------------------------------------
----------------------------S----------S----------S-----------------------------
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----------------------------------------------------------------------------S---
-----------------------------S-----S-------------------------S--------S---------
-S--S---S-------------------------------------S-----S-----S---------------------
------------S-----------------------S---------------S---------------------------
-----------------------------------------S-------S------------------------------
--------------------------S---------S-S--------------S--------------------------
------------------------------------------------------S-----S-------S--------S--
------------------------SS-----------------------------------------------S------
----------S----------SS----S----------------------------------------------------
----------S------------------S----S------S----SS--------------------------------
--S-----------------------------------------S------------------------------S----
---------S-------------------------------S--------------------------------------
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>forward_988
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--------CAGCGACTCCCATTATCCCC----------------------------------------------------
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>reverse_2483
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--TGCGTGTTGACTGGTTCCTG----------------------------------------------------------
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