>input_sequence_84235
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-------------------------------------------------------------------------------A
TGGGTGGGGTAGGCAGGATGGACCGGGACGGGGATACTGCTGAGGCTGCTGATGAGAACGCTGGTGGTGGTGGTGACCAA
GGCACGGGGGCTGATGGTGTTCACGGTGGAGCAGACTGCCAAGGTCTTGGTGACCTCCGCCATGGAGCAGCAGTGCAGCC
TATGAATGTGTGCAGCTCCATGAGCATGGCCTTTTCGTACTCCGCGCTCACCGCCTTAATCGCAGCCTGCCACATGGTTG
ACGATGCACTCTTCCCTATCTGCCTTCGGTTCAGTCTCATTGTGATGTATGCTGCCACAGGCACCAGGTGA---------
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>chr5B_1_TraesCS5B01G273100
TGTTTGATACATTTTCCCGCAAAAAAAAA--ACATATTTGATACATATAAATAAATTGTGGATGCCAAGATATCTGATAC
ATGGTTACAAAATTTGACTGGATAATCTTATATTTTATCTCCTGAGCATATACTGAACAACAACAAAAAATAACATACAC
GTCTTTGTGCAGGTGGCAGATTCAGAGTTTTCATATGTGA------GAGCTGTCACACCACACAAGACATGAACTAATTT
CAGAGAACTCTCTATGGAAG------TGATGAATTTGAATGCTTACAGGTACAAAACTGTATTGAATTCTAACTGGTCAC
ATATGTTGCTTTTTGAAAAGTTTCCAGATTACAT----------------------------------------------
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-------------------------------------------------------GCATGTATATCTGCTGGTCATTAAT
GAATATAGTCGAACTGGTGTTTTTCACAAATCATTGATAATGGGAAAAGTCACTTGATTTTTGTCAGTGTTGCTCCTATG
AATTACTTAAACTCAGAATCCAGGGATTTCATTAATA---GTTAGGTGTGGAAACATAGCACTGCTATTCTTCATTTCAG
ACAATGTAACTTTAATTTTTATACTTCTATAAGCACTAAATTAATTGGATTATCAATGATTTGGAAACGACTGAGTGCTA
ATTACACAAGATGGAAGATTAAGTTGAATCTGATCTATTTACCGGAGTATAGTTCAAAGACAAATCATGTTATTGTTGTA
TAATTAGAAATGTGATCATATCTATCAATTCAAGAATTAGTTGGGCCACAGGTTAAACCGTTCTGTTCATCTAAATGTCA
AATCATTCATATCTACATCATTCTAAAAGTGTTTTTATGGCATTCGATGCTAATTTCAGGTACAGGTTCAGGACTGAAGA
AGTCATGGTTTAACGCTTCCACATCGTCATTGGAGCTGAA-CCAGTGCATAATCCGGTGCTCCCGGGACTCACCGCAGCC
GGTGTGGTCGCCAATGTCACTCTCCCGCACCGCGGTATAGGGAGGATGCTTGCGGTAGAGCTCCCGGGCCTTGAGGGCCA
TGGGTGGGGTAGGCAGGATGGACCGGGACGGGGATACTGCTGAGGCTGCTGATGAGAACGCTGGTGGTGGTGGTGACCAA
GGCACGGGGGCTGATGGTGTTCACGGTGGAGCAGACTGCCAAGGTCTTGGTGACCTCCGCCATGGAGCAGCAGTGCAGCC
TATGAATGTGTGCAGCTCCATGAGCATGGCCTTTTCGTACTCCGCGCTCACCGCCTTAATCGCAGCCTGCCACATGGTTG
ACGATGCACTCTTCCCTATCTGCCTTCGGTTCAGTCTCATTGTGATGTATGCTGCCACAGGCACCAGGTGACACGCCGGA
ATGCAGAGCGAGGTGAGCTGGTGCTGCTACCATTGCTTTATCCATTGCATGGTTCTTTTATTTAGTTGCACGATGCTTTC
TATCTTGATA-TTTTTGTGTTGGATGAGCTGATTGTATAACGTGAAGCCAAGCAGAACCAGCTTGTTATTTGTGAGAGTC
GGCTACTTTCAAGTCCTGTTAATAGGTGAATGAGTTGAACTCAGCTCACACTTGTAGTTTGTATCGATGCCATTCTTCAT
CAGGGATAAACTGTCAAATTTTCAGTTGATAATGGTGCTAATGTTCGGCCCGTGCTGGATTTACTTGGATTTTTTTGGTA
TGATGATACCAGTCCTATCAA-----------------------------------------------------------
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-------------------------ATTGTTATATTGTGTGAATGTTTGTACAATTTGATGTTTATAAGTAAAATATCTA
AATTAACACTAATATATATTGTATTTTTTTTCCAAAAACACCAATATATATTGAGTTTGTAGTATTGTCCGTATCTAAAT
TCTGCTGGATGTTAAACATTGAGCTCGGGGAAGTTCATTGAATACATAGTCACCCGACTGCATGTATGGTGTCATTGTTC
AGATTGCATGTATGATTTTTCATTGTTAAACAATATTGACCACTCCCTTTAACTAAGAGAATTTTTATTTTTATATTGAT
TTTCTGTATGGTTTCTCTGCTGATCACAATTTGGTAATAACCCAAGGTTGCCTTGATGTGCTATGGTGAACAATTAGCAG
AGACATCTCTTAAAAAAGCTTCTACTCTCATCTGTCATTTATGCATATGTACATGTAAGATCGATCATGATTATTTTGGA
CCAACGTTTATACCACTTCCCCGTATGTTAATATACGGGACATCGATTGCTTGTGAAAAATATTACAAAGATGTCCTCGA
TTCCATAAAAGAATTTTGTTCCATCTATGTGATTGTGTGATGTTCCTGAAACGTATGTTCACTTGTCTATTGTCCTCTTG
GGTCTGAAATATTGTTGCTCATCCTTTCTCATCATT
>chr5B_1
TGTTTGATACATTTTCCCGCAAAAAAG----ACATGTTTGATACATACAAATAGATTGTGGATGCCAAGATATCTGATAC
ATGGTTACAAAATTTGACTGTATAATCTTATATTTTATCTCCTGAGCATATACTGAACAAC----AAAAATAACATACAC
GTCTTTGTGCAGGTGGCAGATTCAGAGTTTTCATATGTGAATGTGAGAGCTGTGACACCACACAAGACATGAACTAATTT
CAGAGAACTCTCTATGGAAGGGGGAGTGATGGATCTGAATGCTTACAGGTACAAAACTGTATTGAATTCTAACTGGTCAC
ATATGTTGCTTTTTGAAAAGTTTCCAGATTACAT----------------------------------------------
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-------------------------------------------------------GCATGTATATCTGCTGGTCATT-AT
GAATATAGTCAAACTGGTGTTTTTCACAAATCATTGATAATGGGAAAAGTCACTTGATTTTTGTCAGTGTTGCTCCTAAG
AATTACTTAAACCCAGAATCCAGGGATTTCATTAATA---GTTAGGTGTGGAAACATAGCACTGCTATTCTTCATTTCAG
ACAATCTAACTTTAATGTTTCTACTTCTATAAGCACTAAATTAGATGGATTGACAATGATTTGGAAACGACTGAGTGCTA
ATTACACAAGATGGAAGATTAAATTGAATCTGATCTATTTACTGGAGTATAATTCAAAGACAAATCATGTTATTATTGTA
TAATTAGAAATGTGATCATATCTATGAATTCAAGAATTAGTTGGGCCACAGGTTAAACCGTTCTGTTCATCTAAATGTCA
AATCATTCATATCTACATCATTCTAAAAGTGTTTTTATGGCCTTCGATGCTAATTTCAGGTACAGATTCAGGACTGAAGA
AGTCATGGTTTAACGCTTCCACATCGTCATTGGAGCTGAATCCAGTGCATAATCCGGTGCTCCTGGGACTCACCGCAGCC
AGTGTGGTTGCCAATGTCACTCTCCCGCATCGCGGTATAGGGAGGATGCTTGCAGTAGAGCTCCTGCGCCTTGAGGGCCA
TAGGCGGGGTAGGTAGGATGGACCAGGACGGGGATACTACTGAGGCTGCTGATGAGAACGCTGGCGGTGGTGGTGACCAA
GGCACGGGGGCTGATGGTGTTCATGGTGGAGCAGGCTGCCAAGGTCTTGGTGACCTCCGCCATGGAGCAGCAGTGCAGCC
TACGAATGTGTGAAGCTCCATGAGCATGGCCTTTTCGCACTCCGCGCTCACCGCCTTAATCGTAGCCTGCCACGTGGTCG
ACGATGCACTCTTCCCTATCTGCCTTCGGTTCAGTCTCATTGTGATGTATGCTGCCACAGGCACCAGGTGACACGCTGGA
ACGCAGAGCGAGGTGAGCTGGTGCTGCTACCATTGCTTTATCCATTGCATGGTTCTTTTATTTAGTTGCACGATGCTTTC
TATCTTGATTTTTTTTGTGTTGGATGAGCTGATTGTATAACGTGAAGCCAAGCAGAACCAACTTGTTATTTGTGAGAGTC
GGCTACTTTCAAGTCCTGTTAATAGGTGAATGAGTTGAACTCAGCTCACACTTGTAGTTTGTATCGATGCCATTCTTCAT
CAGGGATAAACTGTCAAATTTTCAGTTGATAATGGTGCTATTGTTCGACCCGTGCTAGATTTACTAGTATTTTTTGGT--
--ATGATACCAGTCCTATCAAATTGTTATATCGAAAAAGACTTTCGCCCCGCTTTATAAATAAAGCAAACTACCACAAGA
CATACAACCACCGCAGGTCCACAAACACACACCACCCAAGTACCACAACAAAGTATAAAGGTTCTGCTGAGGGCACAGCT
CAACAAGCCCAGAAGAAAGAGAAAAACACCACAAAGCCTGCCCAGCGCAGGGGATCTAGTCAGGCTCCGGCGGCGGCGGC
GGGGGCGGCGGCGACAGGCGAACGGCCATTGAGCGTAGATCGGCGATGAAGGCTGAGATGGCGTCCCAATCCGGGGGGCG
GCTAAGCGGCCGCCAAAGCTGCAAGAAACCCGAGAATTTGTAGAGAGCATCAGTAGCGCGACGAAGGGGAGAATGTTGGA
TCACAGGCTTATTGCGAACGGTCCACAGCGTCCAGGCAAGGACCCCAATCTCCAGCCACCTAATGTGGCGAGAGGACATA
GGGGACACTTGGAGTTCAGCAAAAAGGTCCGGAAAATTGGTGTGGCACCAACTCCCACCGACAATCTCGCGAAAGCAGTT
CCATAGGAACCGGGCGGAGACGCAAATTGTTATATTGCGTGAATGTTTGTACAATTTGATGTTTATAAGTAAAATATCTA
AATTAACACTAATATATATTGTGTT----TTCCAAAAACACCAATATATGTTGAGCTTGTAGTATTGTCCATATCTAAAT
TCTGCTGGATGTTAAACATTGAGCTCGAGGAAGTTCATTGAATACATAGTCACCCGACTGCATGTATGGTGTCATTGTTC
GGATTGCATGTATGGTTTTTCATTGTTAAACAATATTGACCACTCCCTTTAACTAAGAGAATTTATATTTTTATATTGAT
TTTCTGTATGGTTTCTCTGCTGATCACAATTTGGTAATAACCCAAGATTGCCTTGATGTGCTATGATGAACAATTAGCAG
AGACATCTCTTAAAAAAGCTTCTACTCTCATCTGTCATTTATGTATATGTACATGTAAGATCGATCAGGATTATTCTGGA
TCAATGTTTATACCACTTCCCCGTATGTTAATATACGAGACATCGATTGTTTGTGAAAAATATTACAAAGATGTCCTCGA
TTTCATAAAAGAATTTTGTTCCATCTATGTGAT--TGTGATGTTCCTGAAACGTATGCTCACTTGTCTATTGTCCCCTTG
GGTTTAAAATATTGTTGCTCATCCTTTCT-------
>chr5B_1
TGTTTGATACATTTTCCCGCAAAAAAAAAAAACATGTTTGATACATATAAATAGATTGTGGATGCCAAGATATCTGATAC
ATGGTTACAAAATTTGACTGGATAATCTTATATTTTATCTCCTGAGCATATACTGAAGAGC-----AAAATAACATACAC
GTCTTTGTGCAGGTGGCAGATTCAGAGTTTTCATATGTGA------GAGTTGTCACACCACACAAGACATGAACTAATTT
CAGAGAACTCTCTATGGAAG------TGATGGATCTGAATGCTTACAGGTACAAAACTGTATTGAATTCTAACGGGTCAC
ATATGTTGCTTTTTGAAAAGTTTCCAGATTACATGCATGCAATGTTCAAGAAATCGTTAACTGGTAGCTGCTCGGTCGGT
TTAGGAGTAGCAATTAGTCGGTGAATCAGCCTATTAACTGGATTAATCAGTCGACCATTAATCGGTAGACTGAATAGAAA
CTTGCCAACATATATCTAGAATTTTTTAATGTATTATACCATACTCTCATGCTCCCAGCTATGTAGTATACCAAAATATG
TTGCCATACACATATGAAAAGCATAGAGAGGAGGTAAAATTATTAATCCTATCTATTAAGGAGCGAAATGGGGCCCGAAG
GGGTTATGGGCCAAATTTTTGGGCTTTGTTTGCCCACCCGTTAATGGGCCAGTAGGGATTAGTCGGCATGACAACTGATT
AATCGGTCTAACTAGCCAATTAATCGGCCTGACAAGTTAACGCGACGAATAGGCGTTATTCAATTCGGCCATGCTATGAG
TAGCGATTAACTGGCCTGTTAACTGATTAATCGGGTGAATTCTTGAACAGTGCATGCATGTATATCCGTTGGTCATT-AT
GAATAAAGTCGAACTGGTGTTTTTCACAAATCATTGATAATGGGAAAAGTCACTTGATTTTTGTCAGTGTTACCCCTATG
AATTACTTAAACCCAGAATCCAGGGATTTCATTAATAATAGTTAGGTGTGGAAACATAGCACCGCTATTCTTCATTTCAG
ACAATGTAACTTTAATTTTTCTACTTCTATAAGCACTAAATTAATTGGATTAACAATGATTTGGAAACGACTGAGTGCTA
ATTACACAAGATGGAAGATTAAGTTGAACCTGATCTATTCACTGGAGTATAGTTCAAAGACAAATCATGTTATTGTTGTA
TAAGTAGAAATGTGATCATATCTATGAATTCAAGAATTAGTTGGGCCACAGGTTAAACCGTTCTATTCATCTAAATGTCA
GATCATTCATATCTACATCATTCTAAAAGTGTTTTCATGGCCTTCGATGCTAATTTCAGGTACAGGTTCAGGACTAAAGA
AGTCATGGTTTAACGCTTCCACATCGTCATTGGAGTTGAATCCAGTGCATAATCTGGTGCTCCCCGGACTCACCGCAGCC
GGTGTGGTTGCCAATGTCTCTCTCCTGCACCGCGGTATAGGGAGGATGCTTGCGGTAGAGCTCCCATGCCTTGAGGGCCA
TGGGAGGGGTAGGCAGGATGGACTGGGATAGGGATACTACTAAGGCTGCTGATGAGAACGCTGGCGGTGGTGGTGACCAA
GGCACGGGGACTGATGGTTTTCACGGTGGAGCAGGCTGCCAAGGTCTTGGTGACCTCCGCCATCGAGCAGCATTGCAGCC
TACGAATGTCTGCAGCTCCATGAGCATGGCCTT-----------------------------------------------
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>chr5B_1192
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------------------------------CTTTTCGCACTCCGCGCTCACCGCCTTAATCGCGGCCTGCCAGGTGGTCG
ACGATGCACTCTTCCCTATCTGCCTTCGGTTCAGTCTCATTGTCATGTATGCTACCACAGGCACCAGGTGACATGCCGGA
ATGCAGAACGAGGTGAGATGGTGCTGCTACCATTGCTTTATCCATTGCATGGTTCTTTTATTTAGTTGCACGATGCTTTC
TATCTTGATTTTTT--GTGTTGGATGAGCAGATTGTATAACGTTAAGCCAAGCAGAACCAGCTTGTTATTTGTGAGAGTC
GGATACTTTCAAGTCCTATTAATAGGTGAATGAGTTGAACTCAGCTCACACTTGTAGTTTGTATCGATGCCATTCTTCAT
CAGGGATAAACTGTCAGATTTTCGGTTGAGAATGGTGCTAATGTTCGGCCCGTGCTAGATTTATTTGGATTTTTTGGT--
--ATGATACCAGTCCTATCAA-----------------------------------------------------------
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-------------------------ATTGTTATATTGTGTGAATGTTAGTACAATTTGATGTTTATAAGTAAAATATCTA
AATTAACACTAATATATATTGCGTTT---TTCCAAAAACACCAATATATATTGAGCTTGTAGTATTGTCTATATCTAAAT
TCTGCTGGATGTTAAACATTGAGCTCGGGGAAGTTCATTGAAGACATAGTCACCCGACTGCATGTATCGTGTCATTGTTC
GGATTGCATGTATGATTTTTCATTGTTAAACAATATTGGCCACTCCCTTTAACTAAGAGAATTTTCATTTTTATATTGAT
TTTCTGTATGGTTTCTCTATTGATCACAATTTGGTAATAACCCAAGGTTGCCTTGATGTGCTATGATGAACAATTAGCAG
AGACATCTCGTAAAAAAGCTTCTACTCTCATCTGTCATTTATGTATATGTACATGT------------------------
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>SNPs
-----------------------------------S-----------------S--------------------------
-------------------------------------------------------------SSSS---------------
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-------------------------------S--S---------------------------------------------
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-----------------------------------------------------------------------------S--
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------------S-------------------------------------------------------------------
--------------------S-------------------------------S---------------------------
------------------------------------------S-------------------------------------
-------------------------S------------------------------------------------------
-----------------------------------------S--------------------------------------
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--------S---------------------------------------------------------S-------------
----S---------------------------------S-------------------------S---------------
----------------------------------S---------------------------------------------
--S----------------------------------S-----------------------------------S----S-
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---------S----------------------------------------------------------------------
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--------------------------------------------------------S------------------S-SSS
SS------------------------------------------------------------------------------
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----------------------S---SSS--------------------------S--------------S---------
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S-------------------------------------------------------------------------------
-----------------------------------------------------------------S--------------
-------------------------------------------S-----------------------S-------S----
S---S--------------------------------S-----------S------------------------------
--S------------------------------SS----------------------S-----------------S----
---S-S-----------------------SSSSSSS
>forward_1507
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------------------------------------------------CTTGCGGTAGAGCTCCCGG-------------
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>reverse_3205
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----CGTTTATACCACTTCCCCGT--------------------------------------------------------
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