>input_sequence_84226
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-------------------------------------------------------------------------ATGTCGC
TTCTGCACTGCTTCCTGAAGCCGTCGAGGATGAGCCTGCAGCGGTGCGTCGCCGGCGACGACATGACGGCGGACGACTTC
AAGGAGTGGATCCGGCGGTTCGACGCGGACCGGGACGGGCGCATCAGCCGCGACGAGCTGCGGCGCGCCATGCGGGCGCT
GCGCGTGCGGTTCACGCGGCGGAGGAGCAGGAGCGGCATCACCTACGCCGACGCCGACGGCGACGGGTACATCGACGACA
GCGAGATCGACGGCCTCGTCGAGTTCGCGCGCACCAGCCTCGGCCTCCGGATCGTCGCCTGCTAG---------------
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>chr5A_1_TraesCS5A01G239000
ATTGCTAGATTCGCTCAGTAGGGGTTGATGAATAGTGAGCTGATAATGGAATTTTTCTTTGATGGAGTGGCCATGTAGGC
TATAACTTTGTTTGTAGAGTACTACTCCCTCAGTGGGGTTTAGTATCTTTGTACCTGTTGTAAGTTGGAGAAGAGCCTGG
AAGTTATGTTTATGATATGCTACGTTTTCATG-TTTTTCAGAAACTGCAGTGGG-GTTTTCAGTTTTGGGGGTCCTGTGC
GGATGTGCCTGGACTTTGATTGTTCATG-GTGGCGCGGATGTATATAAGACGCTTCAATTTCGCGAATGAAATTGGTGGG
TTCCTTTCCTCGAAAAAACCCGAAGAATCTTCGACACGATATGATACATGCCTAGACGCATGGTC--GGAATCCAGTTCC
ATCTTTTGCATGGTTATCAGGTCAGATTTTTGTGTAACGCAACACTCAGCTGCACCTCACAGATCCGCATC------TTA
TGTGCCGGTAGTTATTTGTTTGCCTTTGCACGATTCTGGGCTATC-------------TGTAGCCATTTCCTGCCCACTC
CACGTGCCACTGATTCTTGATTCCTTCAACGACCGTTCAATTATATGATCTACAGTAGCAATATTATTCCAACCGATTTC
GTATGCGTCCA--TATATTCTTCGCTCCACTAATTCTCGAGATGGTTATCTCTTATCTGTCTGCGTCCATCATCTACTTG
CACAACAAAATCACCGGAGCTAGCTAGTCGTTGCTAACTTATCTGTCAACATAGCATTTGGGCGTAAGTTTATGTACTGC
TGTAAACTCTCCGTGTTTTAATCCGAATCCGAATTTAGAGGGGGTGGCAGGCATTAGATAGATAGGGACGCATATATCCA
TCTCGTCATATCCATGTCCA-------TTATTTCTTCCCACGGATCCGTGGAGCCGGTCCGCGGATATATAAGCGCCACC
AAGGCAGTGCAGACAGGCTCACCCACTCGGTCCGACACATATTAAGTGGAAGCACAATAGCAGTTTGGCGCGAATGTCGC
TTCTGCACTGCTTCCTGAAGCCGTCGAGGATGAGCCTGCAGCGGTGCGTCGCCGGCGACGACATGACGGCGGACGACTTC
AAGGAGTGGATCCGGCGGTTCGACGCGGACCGGGACGGGCGCATCAGCCGCGACGAGCTGCGGCGCGCCATGCGGGCGCT
GCGCGTGCGGTTCACGCGGCGGAGGAGCAGGAGCGGCATCACCTACGCCGACGCCGACGGCGACGGGTACATCGACGACA
GCGAGATCGACGGCCTCGTCGAGTTCGCGCGCACCAGCCTCGGCCTCCGGATCGTCGCCTGCTAGAAACGGAGCAGATCG
GCTCCTCCAGTCCGGTCCAGTAGCTACGTG------CTCGACCTACGTGATGGCGCGCACGAGATGGCCGTTGTAG----
CTAGAATAAGGCCGTCTCAGATGCGGAAAGTGAACCTTATT---TCTGTC--------TTCTTTTCTTTTTCTCTCGAGC
TGCAGCCCGTGCACGGAAATAATAGAAGGTGCAGGCCTGGCTTAGCGCAAGTAAGGAGTAGTGC----TGTAGTACTCGC
TTTATGCAGTCGCATGCATGGAATAATATGTGTATGTTTGATCTAATGTACAGTTTTT-------------------TTT
TTTTGAGAAACTTGTACAGTATTATTTTCTCCAAATTATAGCAGAAAAAGGAGTAGGGCGTTTTGGAGGCCCAGCTCCAT
GGAGGCCATAATTTTGGAAAATTCAAAATTCAAACTTTTTAGTTTCAATAAATTCTGAAAATAATAATATACATATACGT
GGATGAAATGTATATGTGAAAAATTCAATGATCAAATACCTTGAATTGCGAGTTA--AAAAATGATGGAGTTTGAGAATG
AACAGTATATGCGATGAAAAGCCACATATTTGTTTTTTCTATAGCTCTCATTTTTACTGTATCTCATCTTAAAAATCTAC
ACCCATGTACTTGCGCTTTTTGGATGTATGTGTATTTTTTGTTCAAATTTTTCTAAAAGATAATGTCGGATTACGGGTTC
CGGCAAAACCCTCAAGATTCAAACACTGGGGTGCGCGCGAAGGTTTCCTCCCTATCGATCCACGCCCTAACTCTCTAAGG
TCTCGCAGACGAACTCGACGAACTCGCAAGACAAAGACACAAGATTTATACTGGTTCGGGCCACCGTTGTGGTGTAATAC
CCTACTCCAGTGTGGTGGTGGTGGATTGCCTCTTGGGCGGATGATGAACAGTACAAGGAGAAGAACAACCTCCTGAGGTT
GAGGTGTTCTTGTGCTTGGCGAACTTGTGTGGGTGAGATGCCTCTGAATGAGTTCACTCTCTCTCTCTCTC
>chr5D_1
ATTGCTAGATTCGATCAGTAGGGGTTGATGAATAGTGAGCTGATAATGGAATTTTTCTTTGATGGAGTGGCCATATAGGC
TATAGCTCTGTTTGTAGTACA----------------------TATCTTTGTACCTGTTGTAAGTCGGAGAAGAGCCTGG
AAGTTATGTTTCCGACATA-TACGTTTTCATGTTTTTTCAAAAACCGCAGTGGG-TTTTTCAGTTTTGGGGGTCCTGTGC
GGATGTGCCTGGACTTTGATTGTTCG-TTGTGGCGCGGATGTGTGTAAGACGCTTCATTTTCTCGAATGAAATTGGTGGG
TTCCTTTCCTCGAAAAATAA-GAAGAATCTTCGACACGCAATGATACA-GCCTAGACGCATGGTCCAGGAACCCAGTTCC
ATCTTTTGCATGGTTATCAGGTCAGATTTTTCTGAAACGCAACACTCAGCTGCACCTCACAGATCCGCATCGGCATCTTA
CGTGCCGGTC-TTATTTGTTTGCCTTTGCACGATTCCGGGCTATCCATGTCGCCTATCTGTAGCCATTTCCTGCCCACTC
CACGTGCCACTGATTCTTGATTCCTTCAACGACCGTTCATTTATATGGTC-----TAGCAATATTATTCCAACCGATTTC
GTATACGTCCACATATATTCTTCGTTCCACAAATTCTCGAGATGGTTATCT-------GTCTGCGTCCGTTATTTACTTG
CACAACAAAATCACCGGAGCCATTCATTTGGGTGTGTCAGTTTACGTAA------------------------------C
TGTAAACTCTCCGTGTTTTAATCCGAATCGGAATTTCGAGGGGGTGGCAGGCATTAGATAGATAGGTACGCATATATCCA
TCTTGTCATATCCATGTCTGATGTCTGTTATTTCTTCCCACGGATTCGTGGAGCCAGGCCGCGGATATATAAGCGCCACC
AAGGCAGTGCGGACAGGCTCACCCACTCGGCCGGACACATATTAAGTGAAAGCACATTCGTAGTTTGGCGCGAATGTCGC
TTCTGCACTGCTTCCTGAAGCCGTCGAGGATGAGCCTGCAGCGGTGCGTCGCCGGCGACGACATGACGGCGGACGAGTTC
AAGGAGTGGATCCGGCGGTTCGACGCGGACCAGGACGGGCGCATCAGCCGGGACGAGCTGCGGCGCGCCATGCGGGCGCT
GCGCGTGCGGTTCACGCGGCGGAGGAGCAGGAGCGGCATCAGCTACGCCGACGCGGACGGCGACGGGTACATCGACGACA
GCGAGATCGACGGCCTCGTCGAGTTCGCGCGGACCAACCTCGGCCTCCGGATCGTCGCCTGCTAGAAACGGAGCACATCG
ACTGCTCCAGTCGGGTCGAGCAGCTACGTG------CTCGACCTACGTGATGGCGCGCACGAGATGGCCGTTGTAG----
CTAGAATAAGGCCATCTCAGATGCGGAAAGTGAACCTTATGTTCTCTGTCTTTTGTTTTTCTTTTCATTTTCTCTCTAGC
TGCAGCCCGTGCACTTGAATAATAGAAGGTGCATGCCTGGCTTAGCGCAAGTAAGGGGCAGTGT----TGTAGTGCTCGC
TTTATGGAATGGAATA-----------ATATGTATG-TTGATCTAACGATCTTCTTGT-------------------TTT
TCTTCCCTCAA-TGTACAGTATATTTGTCCAAACTAGCAGA---AAAAAGGAGTAGGGCGTTTTGGAGGTCCAGCTCCAT
GGAGGACATGATTTTGAAAAATTCAAAATTCAAACTTTTCAGTTTCAATAAATTCTGAAAATAATAATATATGTATACAA
GGATGAAATGTATACGTGCAAAATTTCATGATCAAATACCTTGAATTGCGGGCAAATAAAAATCATGGAGTTTGAGAATG
AGCAGTGCATGCATG-----------------------------------------------------------------
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>chr5B_9
--------ATTCGCTCAGTAGGGGTTAATGAATAGTGAGCTGATAATGGAATTTTTCTTGGATGGAGTGGCCATATAGGC
TATAGCTTTGTTTGTAGTA--------------------------TCTTTGTACCTGTTGTAAATAGGAGAAGAGCCTGG
AAGTTATGGTTCTGATATGCTACGTTTTCATG-TTTTTCAAAAACCGCAGTGTGTTTTTTCAGCTTTGGGGGTCCTGTGC
GGATGTGCCTGGACTT-GATTGTTCGTTTGTGGCGTGGATATGTATAAGTCGCTTCAATTTCTCGAATGAAATTGGTAGG
TTCCTTTCCTCGAAAAACAA-GAAGAATCTTCGACACGCAATGATACGTGCCTAGACGCATTGTCCAGGAATCCAGTTCC
ATCTTTTGCACAGTTATCAGGTCAGATTTTTCTGAAACGCAACACTCAGGTGCACCTCACAGATCCGCATC------TTA
TGTGCCGGTA-TTATTTGTTTGCCTTTGCACGATTCCGGGCTATCCATGTCGCCTATCTGTAGCCGTTTCCTGCCCACTC
CACGTGCCACTGATTCTTGATTCCTTCAACGACCGTTCATTTATATGGTC-----TAGCAATATTATTCCAACCGATTTC
GTATACGT--ACATATATTCTTCGTTCCACTAATTCTCGAGATGGTTATCT-------GTCTGCGTCCGTTATTTACTTG
CACAACAAAA-------------TCATTTGGGTGTGTCAGTAATGT--A------------------------------C
TGTAAACTCTCCGTGTTTTAATCCGAATCGGAATTTAGAGGGGGTGTCAGGCATTAGATAGATAGGGACGCATATGTCCA
TCTCGTCACATCCATGTCTA-------TTATTTCTTCCCACGGATTCGTGGAGCCAGGCCGCGGATATATAAGCGCCACC
AAGGCAATGCAGAGAGGCTCACCCACTCGGTCCGACACATATTAAGTGAAAGCACATTCGTAGTTTGGCGCCAATGTCAC
TTCTGCACTGCTTCCTGAAGCCCTCCAGGATGAGCCTGCAGCGGTGCGTCGCCGGCGACGACATGACGGCGGACGAGTTC
AAGGAGTGGATCCGGCGGTTCGACGCGGACCAGGACGGGCGCATCAGCCGCGACGAGCTGCGGCGCGCCATGCGGGCGCT
GCGCGTGCGGTTCACGCGGCGGAGGAGCAGGAGCGGCATCAGCTACGCCGACGCCGACGGCGACGGGTACATCGACGACA
GCGAGATCGACGGCCTCGTCGAGTTCGCGCGGACCAGCCTCGGCCTCCGGATCGTCGCCTGCTAGAAACGGAGCAGATCG
ACTACTACAGGCCAGTAC-GTAGCTACGTCTACGTACTCGATCTACCTGATGGCGCGCACGAGATGACCGTTGTATGTAA
CTGGAATAAGGTCATCTCAGATGCGAAAAGTGAACCTTATGTTCTCTGAC--------TTCTTTTCATTTTCTCTCTAGC
TGCAGCCCGTGCACTGAAATAATAGAAGGTGCATGCCTGGCTTAGCGCAAGTAAGGGGTAGTGTTGTATGTAGTACTCGC
TTTATGCAATCGCCTGCATGGAATAATATATGTATG-TTGATCTAATGATGCCTGGCTTAGCGCAAGTAAGGAGTTGTTT
TCTTCCGTCAA-TTTACAGTATATTTTGTCCACTGGCAGAA---AAAAAGGAGCAGGGTGTTTTGGAGGCCCAGCCCCAT
GGAGGCCATAATTTTGGAAAATTCAAACCTCGAACTTTTCAGTTCCAATAAATTCTGAAAA-------------------
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>SNPs
--------------------------------------------------------------------------S-----
----S------------SSS-SSSSSSSSSSSSSSSSSSSSSS----------------------S--------------
-----------S----------------------------S----S---------S------------------------
-------------------------S-S--------------S-------------------S-----------------
-----------------SSSS-----------------SS----------------------------------------
-------------------------------S--S---------------------------------------------
----------S-------------------------S-------------------------------------------
---------------------------------------S-------S--SSSSS-------------------------
----S-------------------S--------------------------SSSSSSS----------S-S--S------
--------------------S-SSS-S-S-SSSS-SS-SSS-S---S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-
-----------------------------S--------------------------------------------------
------------------S--------------------------S---------S-S----------------------
------------------------------------------------S-------S-S-S-------------------
----------------------------------------------------------------------------S---
-------------------------------S------------------------------------------------
-----------------------------------------S--------------------------------------
-------------------------------S------------------------------------------------
S--S----------------------------------------------------------------------------
-------------S--------------------------S-------------------------S---------S---
--------------S------------------S----------------------S------S----------------
--------S--------------------S------S-----------SS-SS---S-----------------------
-S--SS-SS-SS----------SS-----S-S-SSSS-S-SSSS------------------------------------
---------------------------------------S-------------------------------SS-----SS
--------------S---S------SS-----------------------S-SS---------S----------------
-S----SS----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_753
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-------------CCGGAGCTAGCTAGTCGTTG-----------------------------------------------
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>reverse_2136
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-------------------------------------------------------CGATCCACGCCCTAACTCTC-----
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