>input_sequence_84224
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--------------------------------------------------------------------ATGGAGACGGTG
ACGAAGCTGTCGTCCGAGAAAGCGGTGGTGATCTTCACCATGAGCAACTGCCCGATGAGCCACTCGGTGACGAGCCTCTT
CTCGAGCCTCGGCGTGGGCGCCGCGGTCCACGAGCTGGACAAGGACCCACGCGGCCGCGACATGGAGCGCGACCTCGCAA
GACGCCTTGGGCGTACGCCGCCCGTCCCGGTAGTCTTCATCGGCGGCAAGCTCGTCGGCTCCACCGACAGGATCATGTCC
TTGCATCTCAGCGGGAAGCTCGTGGTCATGCTCAAGGCCGCAGGAGCCATGTGGCTCTGA--------------------
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>chr5A_1_TraesCS5A01G094800
AAAACTGCTCCGCGCGCTAAAAACTGTTTTTTATTTTTGACGCGGAGACACTTTAGCAGATGCCACAAAATAATGCACAT
GCAAAAAACTGCTCCGCACGCGCTAAAAGGCGCTATCGCACGCTGCAAATGTTGGACGCCGGACCGCGCGCTTCATAATT
TGCACTGTGTGTTTTTTTGGGCGCGCGTTTTTTGGCATATGAAAAATCAATGTTGTCCACGACGCGCTAAAAGTGCTATG
GTGACGCTGTAAAATATTTTAGCGCTCGATATTTTTGCGTCTATGTTGGAGATGCTCTAAAGAGAGCAATGCTACTTTAC
TTCGAACTACCCTGAGGTAATCTCCCTCTCCCTTACTCTTCTTTGTAGCTGTTGTCCTTGCCCTCTCAATTTTCTCACAT
CAAAAA----------------------------CTGACCCTCAATTTTGCACNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGACCACAAATCACAGGACCACAGAAAATAGTTTCAGCTGAGC
ATACTAGCTAACACCAAGTCTATTACTAGCTATCCGAAAGAAGACAAGAACGCTCTGACCTGCCGGCGATGGAGACGGTG
ACGAAGCTGTCGTCCGAGAAAGCGGTGGTGATCTTCACCATGAGCAACTGCCCGATGAGCCACTCGGTGACGAGCCTCTT
CTCGAGCCTCGGCGTGGGCGCCGCGGTCCACGAGCTGGACAAGGACCCACGCGGCCGCGACATGGAGCGCGACCTCGCAA
GACGCCTTGGGCGTACGCCGCCCGTCCCGGTAGTCTTCATCGGCGGCAAGCTCGTCGGCTCCACCGACAGGATCATGTCC
TTGCATCTCAGCGGGAAGCTCGTGGTCATGCTCAAGGCCGCAGGAGCCATGTGGCTCTGACCACGGGTGCAGCATCAGTT
CATCCCAGCTTTGGCAATTTTCGCACCTCGCCATGCAAGCATGTATCCGCCGCTCTTAACACAAGTAGGGAAAA-TTTTG
CTTGTACTGGTTATTGGGCTGGTCGCCACATGAGCATAGCGTAGTTCCTCTTTCCAAGATGACGGGAACACAAGAAGTTT
TGTTTAGTCGTTGGCGAGATAACAGTGTGAGTCTATGGAATAACGCATACAAGTGTCTCTGAATGAGAAATGCAATTTAT
TACGTCCATTTCCAACAGTTGTGGTTAGGGTTTCACAAATGCTACTCAAAATTCGGTTTTTCCCGAGTGTCGCCGTCTTT
GCCATGTTCCATTCCACGAGTGATGGGCAAAGATGGCCTTTTAGGAGTATAATACTCAGTGAAGGTAGAAACACGGAAAA
GAAATGCCTTTGACGAGAGAGTATAACACATCTAGATACCTCCATATCCGCGACAAGTAATTCTGAATGGAGGAAGTATT
ATTCATTGCTATTTATTTAAGATAACAAAATGTGCGCTGCGTATCCTAAAAAAAAATGTGCGCTCGGTAGAAAACACAAA
AGCGTGTTGTGCTCAGGTGGCGTGGAAGTTGAAACGTTGCACGGGAGATTAAACATTCCCGAATTACTCTCTTGATTAAT
ACTGTTCATTGCAGTTTATTTAAGAAAACAAAATGTGCGCTCCGTACCCCTAAAAGAAAGTGCGCTGCGTGCGTGTGTTT
GTATTAGGACAAAAGAAATTCGCTCAGTAGAAAACAGCAAGTCTGTTGTGCTTAGGTGGTTAGCGCGAGTGAATCTGGCG
GTCAAGCCTCTTGTTCAAATCCTCACTCGCCCAAGAACTTATCCTTCTCTTTATTATTTTCTTCTAATCACTGACAGCTG
GGACCCGCATGGGGGTGGGGAGCTGACCGGTCAACATAGTGAAAAATACGAAGCTGTAGGTTTTAGTGGTGACCGTATAA
TCATCAAGTTGAGTATATAGT
>chr5D_335
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--------------AGGTAATCTCCCTATCCCTTACTCTTCTTTGTAGCTGTTGTCCTTGCCCTCTCAATTTTCTCACAT
AAAAAAGGAAATACGCCTGTGTACAACCGTTAACCTAACCCTCAATTGATACTAAGCTGCTCACTTTGAGAAAATGCAGA
CGTCCCAGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAGCATCGATTCACACCCCTGCAA----------
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---------------------------------------ACCACAAATCACAGGACCACAGAAAATAGTTTCAGCTGAGC
ATACTAGCTAACACCAAGTCCATTACCAGCGATCCGAAAGAAGACAAGAAGGCTCTGACCTGCCGGCGATGGAGAGGGTG
ACAAAGCTGTCGTCCGAGAAAGCGGTGGTGATCTTCACCACGAGCAACTGCCCGATGAGCCACTCGGTGACAAGCCTCTT
CTCGAGCCTCGGCGTGGGCGCCGCGGTCCACGAGCTGGACAAGGACCCACGCGGCCGCGACATGGAGCGCGACCTCGCCA
GACGCCTTGGGCGTACGCCGCCCGTCCCGGCAGTCTTCATCGGCGGCAAGCTCGTCGGCTCCACCGACAGGGTCATGTCC
TTGCATCTCAGCGGGAAGCTCGTGGTCATGCTCAAGGCCGCAGGAGCCATGTGGCTCTGACCGTGGGTGCAACATCAGTT
CATCCCAGCTTTGGCAATTTTCGCACCTCGCCATGGAAGCATGTATCCGCCTCGCTTAACACAAGTAGGGAAAA-TTTTG
CTTGTACTGGTTATTGGGCTGGTCGCCACATGAGCATAGCGTAGTTCCTCTTTCCAAGATGACGGGAACACAAGAAGTTT
TGTTTAGTCGTTGGCGAGACAACAGTGTGAGTCTATGGAATAACGCATACAAGTGTCTTTAAATGAGAAATGCAATTTAT
GACGTCCATTTCCAACAGTTGTGGTTAGGGTTTCACAAATGCTACTCAAAATTTGGTTTTTCCTGAGTGTCGCCGTCTTT
GCCATGTTCCATTCCACGAGTGCTGGGCAAAGATGGCCTTTTAGGAGTGTTACACTCAGTGAAGGTAGAAACGCGGAAAA
GAAGTGCCTTTGACGAGAGCGT----------------------------------------------------------
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>chr5B_335
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--------------AGGTAATCTCCCTCTCCCTTACTCTTCTTTGTAGCTGTTGTCCTTGCCCTCTCAATTTTCTCACAC
CAAAAAAGAAATACGCCTGTGTACAACCGTTAACCTGACCCTCAATTAGCACTAAGCTGCTCACTTTTG--AAATGCAGA
CGTCCCAGATTCTTATGCCCACACCATGAGGGAGCCACCCCCTCCCCTCTCATGGATTGACATATCCTGAACACTATAAA
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---------------------------------------------AGGGCATCGAGTCACACCCCTACAA----------
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---------------------------------------ACCACAAATCACAGGACCACAGAAAATAGTTTCAGCTGAGC
ATACTA----ACACCAAGTCCAGTACTAGCGATCCGAGAGAAGACAAGAACGCTCTGACCTGCCGGCGATGGAGAGGGTG
ACGAAGCTGTCGTCCGAGAAAGCGGTGGTGATCTTCACCATGAGCAACTGCCCGATGAGCCACTCGGTGACGAGCCTCTT
CTCGAGCCTCGGTGTGGGCGCCGCGGTCCACGAGCTGGACAAGGACCCACGCGGCCGCGACATGGAGCGCGACCTCGCCA
GACGCCTTGGGCGTACGCCGCCCGTCCCGGCAGTCTTCATCGGCGGCAAGCTCGTCGGCTCCACCGACAGGATCATGTCC
TTGCATCTCAGCGGGAAGCTCGTGGTCATGCTCAAGGCCGCAGGAGCCATGTGGCTCTGACCATGGGTGCAACATCAGTT
CATCCCAGCTTTGGCAATTTTCGCACCTCGCCATGCAAGCATGTATCCGCCGCGCTTAACACAAGTAGGGAAATTTTTTG
CTTGTACTGGTTATTGGGCTGGTCGCCACATGAGCATAGCGTAGTTCCTCTTTCCAAGATGACGGGAACACAAGAAGTTT
TGTTTAGTCGTTGGCGAGATAACAGTGTGAGTCTATGGAATGACGCATACAAGTGTCTTTGAATGAGAAATGCAATTTAT
TACGTCCATTTCCAACAGTTGTGATTAGGGTTTCACAAATGCTACTCAAAATTCGGTTTTTCCCGAGTGTCGCCGTCTTT
GCCATGTTCCATTCCACGAGTGCTGGGAAAAGATGGCCTTTTAGGAGTGTAACACTCAGTGAAGGTAGAAAC--------
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>chr5A_1753
TAAAAT--------------------------------------------------------------------------
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---------------------------ACATCTAGATACCTCCATATCCGCGACAAGTAATTCAGAATGGAGAGAGTACT
ATTCATTGCTATTTATTTAAGATAACAAAATGTGCGTTGCCTACCCCTAAAAAAATT-TGCGCTCAGTAGAAAACACAAA
AGCGTGTTGTGCTCAGGTGGCGTGGAAGTTGGAACGTTGCACGGGAGATTAAACATTTCCGAATTACTCTCTTGATTAAT
ACTGTTCATTGCAATTTATTTAAGAAAACAAAATGTGCGCTCCGTACCCCTAAAAGAAAGTGCGCTGCGTGCGTGTGTTT
GTATGGTGGAATCTCCCGTGCAA-CAGTAGAAAACAGCAAGTCTGTTGTGCTTAGGTGGTTAGCGCGAGTGAATCTGGCG
GTCAAGCCTCTTGTTCAAATCCTCACTCGCCCAAGAATTTATCTTTCTCTTTATTATTTTCTTCTAATCACTGACAGCTG
GGACCCGCATGGGGGTGGGGAGCTGACCGGTCAACATAGTGAAAAATACGAAGCTGTAGGTTTTAGTGGTGACCGTATAA
TCATCAAGTTGAGTATATAGT
>SNPs
S---S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSS------------------------------------------------------------------
-----------------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSS----------------------------------------------------------------------
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---------------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------------------------------------
--------------------S---------S--------------------------------------------S----
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------------------------------------------------------------------------------S-
------------------------------S-------------------------------------------------
---------------------------------------------------------------S-------S--------
-----------------------------------------------------S--------------------------
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----------------------------------------------------------S---------------------
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----------------------S-------------------------S---S-------------------S-------
---S---------------S--SSSSS------------------------------------S--------SS----S-
------------------------------------S---S--S--SS-------S-S-------S--------------
-------------------------------S-------------------------S----------------------
-------------S------------------------------------------------------------------
----SSS-SS-SSSSSSS-S-SSS--------------------------------------------------------
-------------------------------------S-----S------------------------------------
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>forward_161
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-------------------------------------------------------------GACCGCGCGCTTCATAATT
T-------------------------------------------------------------------------------
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>reverse_1898
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---------------------------------------------------------GTGCGCTCGGTAGAAAACAC---
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