>input_sequence_84222
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-----------------------------------------ATGACCACCTACCAGATCGCCCGTGCTCAACAGCAGGCG
GGGGTGCTCCACCTCCAGATGCACGCACACCCTGCAGGCAACATGGCTCATCCTGCAAACCAGGCTCCGCTCCAGGCGAA
TCAGGGTCAGAATCAGCAACCTGCGGCGCCGGAGGCAGTTCTGCTGAACCAGATCTTCAGACCTGTCGCTGCTTCTGCTT
CCGGTTCTCACGCGCTGGGGGCAGAAGCTTTCATCCTTGCCGCTAGCAACATCATGCTCACGCTGCTTGTTCTGCTGTTC
GTTGTGGCCATCTATTTTGGCGGCGGCAACTAG-----------------------------------------------
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>chr5A_1_TraesCS5A01G050600
AGACAACGGACTAGATGTTGCATGCAGATGAATCTCTGTGCAAAATTCTCATAAGGCAACGGACTACATGTTGCAGGCAG
ATGAATCTATGCGCACAAAATAAGGAAGCGGGAGAACAAGAAATTGACAAGAAGAAGGCCATCGTATGTGGGAGCCCAGA
TGATCCCGATATCTCAACCACTAGTTCGCATGCGGATATGTGCCTGCTATTGTATTTCAGAACCGTATTTCCATTTTGCT
GGTAACGCCACCTGCTCGCATTCATTGCGACCATTGTTGAGGAAATCGTTAACTGGTAACTGCTCGGTTGGCTAATGAGT
AGGGGATTAATAGGCTAATCGGCAAGTTAATCGGCCATTTAATCAATTAATCAGATGATTTCTCAGTTTATTGGCTACTC
GGTGACCCTATGAGTAGGGATTAATCGGCAAGTTAACTGGTTAATCGGATGAATTCTTGAACAGGGATTGCGACGGAGCT
TCACCTACTGCCCGCGGAACAGATACGTGGTGGACGGCTCGTGACCGATGCTGAGCCCTTCTGGTCCGTGTGTGATGCAG
TACTCACCAACGCCGTCAGGTCTATGGACGCCATAAATGCCGGCAGCTGTTTCCCACAAGCTGCAGCAGTCGACACTCTG
TAAAATTCCCCATCCCGCTCCGATCTTTACTGCAAACCCTACCCTTCCTGAGCCACCATGTCCGCCTCATCGTCCTCCTC
TCTCCCAGTTCC-GCCGATTTCCCTCTTGATCTCATTCGGTGTCCCTTCTGTGGCGTGGATCTGGAAACCAATGTGGCAA
GGACCGGGAGCAGGGCGGGCCAGAGGTTCTACAAGTGTGTCCGCTATGATGTAAGTTCCTCTGTTTTCTACCAAATCTCG
ATTAGTTCCTTTCCCGTTCTTGGTTCAGTTCTCACACCTGCATCTCGCATGTTTCTTGCTAATTTTCTCGCAGGCTCGCG
AGTGTAGGTTCTTCGAGTTCCAGAAGGCATACGTCAGGAGGATGACCACCTACCAGATCGCCCGTGCTCAACAGCAGGCG
GGGGTGCTCCACCTCCAGATGCACGCACACCCTGCAGGCAACATGGCTCATCCTGCAAACCAGGCTCCGCTCCAGGCGAA
TCAGGGTCAGAATCAGCAACCTGCGGCGCCGGAGGCAGTTCTGCTGAACCAGATCTTCAGACCTGTCGCTGCTTCTGCTT
CCGGTTCTCACGCGCTGGGGGCAGAAGCTTTCATCCTTGCCGCTAGCAACATCATGCTCACGCTGCTTGTTCTGCTGTTC
GTTGTGGCCATCTATTTTGGCGGCGGCAACTAGTTCGTTATTAGTATGACCTACTTAGACAATTCAGGAAGGGTGGCTCC
CTCGGCATGTAAGCCTGTTTCCATGATGTTGTAGTGTGCGTGTGATGCTTGGGCCGCCGAGTTCGTTGTTGCTAAGTGTC
AGTCAGTCCTCTTCTAGTCATTATTAGGCATAGTATGGTTTGTGTTCAAGGGTGGCTCCCTTTACCTCTAAGCCTATTTA
CCACAGTATGTAATTCGTACTGTAATGTAATGCACTCTTTGGAACTAATGAAACTTGGTTGTGTTAGTTAATCAGTTATC
CGTTTGATTTAGTATCTACTGGAATTTTTATTCTGATTGTTTTTTTACGGTACGCATGGCCTGGGGAACGGGCAAGCACC
ATGATCCACCCCAACAGCTGTACCTCACTCCTCATATCCACCATTTCCTACATCCACTGGGAAAGGAACACGCGTCTCCA
ACAGTCTGAAGTCACGGAGGTAGGCAACACAGGGCGGAGGTTGCGCATGCTGTATTGATTGCAGACCGGCATCCATCT--
-----------ACCCACCTCACCTTTCATTACACACCACTCGTCTCATCCCCTCCGCCCATCCAAGTCTGGCCGCCCTCA
CTTGCCTCTGGAGGTCCGTGTTCGTCGACCCAACTTGGCGGAAAGGATCTCGCGCTACACTTGTTTTATGCATCCACATC
TTCAGCTCATAGCGAATGGTATGTTTTCCTATTGACTCTACAACCTACATTCCTTTAGCTAACATTTGAGTCATCGGAAG
ATGTTAATCTGAAACTAATACATCTTCGGGAACTAAATTTGGATAGGATGAACAATATTCAAATTCTGGTAGCTGCGGGG
CGGATGCAGAGGGATCTCATAGTGCTAACGCACCAGCCGGTCAGCAAGGTCTGCATGCTGCTTTGGATGAGTCATCTTCT
AGTGCTAGAAGTGGAGATCCACCC------GCCCCAACATCACGAATATCTCTCAAGCATGTTGTCAGTGTCATTCAGAC
TTTCAGCGACTA
>chr7A_466
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-----------------------------------------------------------------GATTGCGACGGAGCT
TCGCGTTCTCATGTCTGAACAGATACATGGAGGACGGATCGTCACGGATGCTGAGCCTTGCTGGTCCGTGTGTTCCGCTG
GTCTGACCAACGTCGTCAGGTATAGGGACGCCATAAATGCAGGCAATTGCTTCCCAGCTGCCACGGCCATCCGCACTCTA
GAAAATCCCCCATTCGGTTTCGCTCTCTGCTGCAAACCCTAGTCTACCTGAGCCACCATGTCTGCCTCGTCGTCCTCCTC
TCTCCCTGTGCCAGCCGATTTCCCTCTTGATCTCATCAGGTGTCCCTTCTGCGGCGCGGATCTGGAAACCAATGTAGCAA
GAACCGGGAGCAAGGCGGGGCAGCGGTTCTACAAGTGTGTCCGCTATGATGTAAGTTGCTCTGTTTTGTACCATAACTCG
ACCCATTGGTTTTGCTTTCTTCGATCAGATCTGTCAGATGAATCTCGCATTTTTCCTCCTCATTTTTTCACAGGCTCACG
AATGTTGGTTCTTTGAATTTCAGACGGCCTACGTCAGAAGGATGACTCCGTACCAGATCGCCCGTGCTCAGCAGCAAGCG
GGGGTGCTCCAGGTCCAGATGCAGGCAAACCCGGCCGGCATCGTCGCTCCACCTGCAAACCAGGCTCAGGTCCAGGCGAA
CCAGGGTCAGAATCACCCTCTAGCGACGCCGGAGACCGTTTTGGTGAACCAGATCTTCAGGCCCATCGCAGCTGCTGCTT
CTGGTTCTCAGGCGCTGGGGGCAACAGCTTTCATCCTTGCCGCTAGCAACATCATGCTCACTCTGCTGCTTCTGTTGTTC
GTTGTGGCCATCTATTTTGGCGGCGGTAACTAGTTCGTTCTTAGTACGACATACGTTGACATTTCGGGAAGGGTTCTTAG
CAAA----------------------------AGTGTGTGTGTGATGCTC-GACTGCGGATTTGGTTGTTCCTAGTTTGC
CTTAGGCAAT---------ATGATTAGGGAATTAATG----GTGTTCAAGGGTGGCTCCCTTTACCTCTAAGTCTGTTTA
CCAGAACATGTAATTCATACTCTAATGTAACGCACTATCTGGAACTAATGAAGCTTTGCTGTGTTAGTTAATCAGTTATC
AATTCCATTTAGTATACAGTGCATTTTTTATTTTGGTTGTTTGTTCTTTATTTTT-AACGTACTCAACT---------CC
ATTATACAGCCCAACAGATGGACCTCACTCGTCATCTCCACCGTTTGGTACCTCCTCTCCGAAAGGAACACGCGTCTCGA
TCGTTCTGAAGTCACCGAGCTGCACAACATACTGTGGAGGTTGCGCATGCTGTATTCATTGCATACCTGCATCCATCTAC
CCTATCTACCCACCCACATCGCCTTTCTTTACACACCACTCATTTCATCCCCTACGCCCACCCAACTCTGGTCGCCCTCA
-TTGCCTCTAGAGTTCCTTGTTCGTCGTCCCAACTTGGCGGAAAGGATCTCGC-CTACAGTTGTTTTATGCATCGAGATC
TTCAGCTCTTAGCGAATAGTATGTTTACATACTAGCCGTCCAATCTACATTGGTTACAAACTCGTTTGTGTCCTCGGAAG
ACGATAGCCTGAATCTAATACATCTTCGTGAACTAATTGTTGACAGGATGAACAATATTCAAATTCTGATAGCTGCGGGG
CGGACGCAGATGGATCTGAAAGTGCGAACGCACCGGCCGGTCAGCAAGGTCTGCACGCTGCCCTGGATGAATCTTCTTCC
AGCGCCAGGAGTGGAGACCC-CCC------GCCCCAACTTCATGCATCTCTCTGAAGCACGCTCTCAGTGTCATCAAGAC
TTTCAGCGACTA
>chr7A_466
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-----------------------------------------------------------------GATTGCGACGGAGCT
TCGCGTTCTCATGTCAGAACAGATACGTGGAGGACGGATCGTCACGGATGCTGAGCCTTGCTGGTCCGTGTGTCCTGCTA
GTCTGACCAACGTCGTCAGGTATAGGGACGCCATAAATGCAGGCAGTTGCTTCCCAGCTGCCACGGCCATTCGCACTCTG
GAAAATTCCCCATTTGGTTCCGCTCTATGGTGCAAACCCTAGACTGCCTGAGCCACCATGTCCGCCTCATCGTCCTCCTC
TCTCCCTGTGCCAGCCGATTTCCCTCTTGATCTCATCAGGTGTCCCTTCTGCGGCGCGGATCTGGAAACCAATGTAGCAA
GAACCGGGAGTAGGGCAGGGTAGCGGTTCTACAAGTGTGTCTGCTACGATGTAAGTTGCTCTGTTTTGTACCATTTTTCG
ATCAGTTGGATTTGCTTTCTTGGATCAGATCTGACAGATAAATCTCGTATTTTTCCTCCTCATTTTTTCCCAGGCTCGCG
AGTGTAGGTTCTTTGAATTCCAGACGGCCTACGTCAGAAGGATGACTCCGTACCAGATCGCCCGTGCTCAGCAGCAAGCG
GGGGTGCTCCAGGTCCAAATGCAGGCAAACCCTGCCGGCATCATCGCTCCACCTGCGAACCAGGCTCAGGTCAAGGCGAA
CCATGGTCAGAATCACCTTCCGGCGGCGCCGGAGGCCGTTCTGGTGAACCAGATCTTCAGGCCCGTCGCAGTTGCTGCTT
CTGGTTCTCAGGCGCTGGGGGCAGTAGCTTTCATCCTTGCCGCTAGCAACATCATGCTCACTCTGCTGGTTCTGTTGTTC
GTTGTGGCCATCTATTTTGGCGGCGGCAACTAGTTTGTTCTTAGTACGACGTACGTTGACATTTCGGCAAGGGTTCTTAG
TACA----------------------------AGTGTGTGTGTGATGCTC-GACTGCGGATTTGGTCGGTCCTAGTTTGC
CTTAGGCAAT---------ATGATTAGGCAATTAATG----GTGTTCAAGGGTGGCTCCCTTTACCTCTAAGCATGTTTA
CCAGAAAATGTAATTCGTGCTCTAATGTAACACACTATCTGGAACTAATGAAGCTTGGCTGTGTTAGTTAATCAGTTATC
AATTCCATTTAGTATAGACTGCATTTTTTATTTTGGTTGTTTGTTCTATATTTTTTAACGTACTCAACT---------CC
ATTATCCAGCCCAACAGTTGGACATCACTCGTTGTCTCCACCGTTTCGTACCTCCTCTCCGTGAGGAACATGCGTCTCGA
TCGTTCTGAAGTCACCGAGCTGCACAACATACTGTGGAGGTTGCGCACGTTGTATTCATTGCGTACCTGCATCCATCTAC
CCTATCTACCCACCCACATCGCCTTTCCTTACACACCACTCGTTTCATCCCCTTCGCCCACCCAACTCTGGTCGACCTCA
-TTACCTCTAGAGTTCCTGGTTCGTCGTCCCAACTTGGCGGAAAGGATCTCGC-CTACAGTTGTTTTATGCGTCGAGATC
TTCAGCTCTTAGCGAATGGTATGTTTACATACTAGCCGCCCAATCTACATTGGTTACGAACTCGTCTGTGTCCTCGGAAG
ACTATAGCCTGATTCTAATACATCTCCATGAACTAATTGTTGACAGGATGAACAGTATTCAAATTCTGGTAGCTGCGGGG
CGGACGCAGATGGATCTGAAAGTGCGAACGCACCGGCCGATCAGCAAGGTCTGCACGCTGCCCTGGATGATTCTTCTTCC
AGCGCCAGGAGTGGAGACCC-CCCCCCCCCGCCCCAACTTCACGCATCTCTCTGAAGCACGCTATCAGTGTCATCAAGAC
TTTCAGTGACTA
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------
--S-S-S--SSSSS-S--------------S------S----S--S-----------S-S-------------SS---S-
SS--S-------S--------S--S---------------S-----S--S------SSS--SS-S--SS--SS-------
S------------S-S-S----S---S-S------------SS--S----------------------------------
------S--S--------------------------SS-------------S----S------------------S----
-S-----------------S---S---------------------------------S---------S-----S------
--S----SS---SS-S-------S----S---S---SS--S---------S----S-S--S-----S--S----------
-------------S--S-------S---S--------S--------SS-S--------------------S-----S---
-----------SS----------S---S-------S----S---S----SS----------------S-S----------
S--------------S-SS--S--------------S------S----------------S--S-----S---S------
-S--------S-------------S------------------------------------S-----S------S-----
---------------------------------------S------S---S---S-S----S---S--------SSS-SS
-S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSS------S----------SS-S-S--S--S--S------S---SS-SS-
SS-SS-SSS-SSSSSSSSS--S--------SSSS---SSSS----------------------------------S----
---S-SS--------------S--------S-----S-S-------------S-----S---------------------
SS--SS---------SS----S-S--------S--S------S--SSSSS-SSSSSSSSSSSSSSS-SSSSSSSSSSS--
--S-----S--------S--S---------S----S------S----S---S---S--SS------------------S-
S-SS-----------S---S-SSS-----S-SS-S---------------------S------S---S------------
-----------------S--S------S---------------S---------S------S----S-----S--------
S--------S---S---S---------S-------------------------S-----S--------------S-S---
--------S-----------------S-S--S-SS-SS-S---S-------SS--SS-SSSS-S----S---S-------
-S-S--SS-----S--------------S-------S-S-S--S------------------------------------
----S-----S------S-S-----S--------S--------------------S-----SS-------S--S-----S
--S--S--S--------S--S-----------------S-----S--S-----S-----S-S-S----------SS----
------------
>forward_311
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---------------------------------------------------ACTGGTAACTGCTCGGTTGG---------
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>reverse_1390
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-----------------------------TGTAGTGTGCGTGTGATGCT-------------------------------
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