>input_sequence_84214
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----------ATGTCTGGGCGCGGCAAGGGCGGCAAGGGGCTCGGCAAGGGCGGAGCGAAGCGGCACAGGAAGGTGCTGC
GCGACAACATCCAGGGCATCACGAAGCCGGCGATCCGGCGGCTGGCGCGTCGGGGCGGCGTGAAGCGCATCTCGGGGCTC
ATCTACGAGGAGACCCGCGGCGTGCTCAAGATCTTCCTCGAGAACGTCATCCGCGACGCCGTCACCTACACGGAGCATGC
GCGCCGCAAGACCGTCACCGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGGCCGCACCCTCTACGGCTTCGGCGGCT
AG------------------------------------------------------------------------------
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>chr4D_1_TraesCS4D01G225600
CCAGCCCTCTCGGGTTCCGGCCGGAGCGGCACCTGGCCGGCGACGACGCCACCATGGCGCTCAGTGAGCCGGAGCTGCGG
TTCGTGTCCTTCAGCACCGGGCGGC-GGGCTGCCCCGGGATCGCGCTGGGCACCCTCTTCACTGTCATGTTGTTCGCGCG
GCTCCTGCAGGGGTTCACCTGGAGCTTGCCGCCCGGCGTGGACGGCGTGTGCCCAAGATCCTCTCCGACCTGGGATTCGA
CGCGGAGCAGA----------------------------------AGCTCCTTGAGAGCTGGAGATCCACATCAGCCTGG
AGCTGAAGAACACGC-----------------------------------------------------------------
TGGACAAGATGGCGGCCCTGCCGCGGCACACCCGGGAGGATGTGGAGGACATCCTGGACGGCG--GCTTGGAGCGAGGCC
GACGAGGCGGTCCAGCAGGCGGCGGAAGCCCCGGTCGAGGATGGTACGGCGCAGCGGCTTGTCTCCCTCCGCGCAGCGCA
CAACGAAGACGGCGTCGGAGATGGAGG-GGAGGACGGAGACGGCGCCGGTGAAGCTGTGGCTCCTCTGCTCCGCCGGCTC
GCGCTCGCGCTC-TGCGGCTCTGCTCAAGCTCGGCGGCGAGGCCGGGCCGGCCGTGGCCTGGAGCGGGCGCGGCCTGGGC
ACGGCTTGGGGGTGGACACGGCTGGAAACTTTTTCACCCCCAAGCCAAAAAAATCCGCCGGCAGCCCTCCAAGCGGTGAA
AAAATTGCCTTCTGGCGGGCTCAACGGCTGGAGATGCTCTCAGCCCTTCTTCCTGATTTCCATTTG-----GCCCGGGCA
GCCTTGATCCGCGCGCCTA-CCGCTCGACCAATAGGAACCAGCCCCGCCTCGATCCAACGGCCAAGGCCATCGCGCTCGC
CCCTCACGCGGATCGCTCCCCGATCCAATGCCTCCCGCG-CCCTCCTCCAGCTCTATATATCCC----------------
---AAACCAGCCAATACCAAGCAACAGAAAACAAAATCCCCAAATCCATCTTCGTCCCCGGGAAAGAGAGAGAGAGAGAG
AGCAGCGGAGATGTCTGGGCGCGGCAAGGGCGGCAAGGGGCTCGGCAAGGGCGGAGCGAAGCGGCACAGGAAGGTGCTGC
GCGACAACATCCAGGGCATCACGAAGCCGGCGATCCGGCGGCTGGCGCGTCGGGGCGGCGTGAAGCGCATCTCGGGGCTC
ATCTACGAGGAGACCCGCGGCGTGCTCAAGATCTTCCTCGAGAACGTCATCCGCGACGCCGTCACCTACACGGAGCATGC
GCGCCGCAAGACCGTCACCGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGGCCGCACCCTCTACGGCTTCGGCGGCT
AGGCTTTCCGTTCCTCGTAGCGGCTTGTTTGCTGGTGGTGTGGTGG----------------TGGTAGTTTGGTGTCGAA
TGTTGTGTTCCTGATGTAACCGTG-CCCTGTTGCAGTGAAGTAAATCCTGGTGTCTTATTTGCAAGAATGCCGTGATTGT
GCCCCTTTTAATCCAATGTCAGATATGCGTGCGCTTCTC---TTTTGCGGCTTATTTCTTCTTTGGATAATTGCTTTGCT
CTGGTTATTGCAGCTGCAGTGGCATGCCAGTGGTGTTGTTCTAGACAACTGCAAATTATGCACGTTCCGGCTGAAAGTCT
GAAACTGCCAAATTGGTGATGACGCTTCAACATGTTCGCACAAGTAAATATCGGCGGTGCTTTTTGCCTTGTCACCTAGG
ATTGTAAACTGGCAAGAC------------TTTGCGTTTGTTGTGTTTTCTGGATTGTTGAGAAAGAAAACTAGGCGCTT
GGTTTTGCTGTTTTTGAATTGCTATAGGACTTTGTACAATACTAGGTGCTCAGAAAAATGAATCGGATCTTTCTAAAACA
CAGGTGCCTATTTTTAGAGTAAATGCCTAATTAAGCATGTATCC------------TGTACAAATAAGCACTGATGCTTA
AGAAAACCTGATTTATTTCTTCAAGCACCTCTCTCCTAAGTACTCCCTCTGTAAATAAATATAAAAGCGTTTAAATCACT
ACTTTAATTATCTAAACGCTCTTATATTTGTTTACAGACGGAGTACCTTGCATTGTGCAAGGTCTAAGCAGTC-TTCCAG
CAGTAAGGATGTAGTATGAGTAACATAGAAGACACAAAATGGACAACAAAAATCTTTCTTCAGATTTTGACACTGATAAA
CAGATATGAACACAATGATAACCTTCAAATTGATGCAGGTTAACTTAGCTGTACATGAAGCCAGTTTTGGCACCAACGAC
ATACACAGACTACTTC--ACAAGAGAATGGAACACAAACAAACAGCAGCTCTCTTCTTCATGCAGGTAAGCA-CATGTAC
AGTGAGGTTT
>chr3B_4
---GCCCTCTCGGGTTCTGGCCAGAGCGGCACCTGGCCGGTGACGACGCCACTGTGGCGCTCAGCGAGCCGGAGCTGCGG
TTCGTGTCCTTCAGCACCGGGCGGCGGGGCTGCCCCGGGATCGCGCCGGGCACCCTCTTCACCGTCATGCTGTTCGCGCG
GCTCCTGCAGAGGTTCACCTGGAGCTTGCCGCCCGGCGTGGATGGCGTGTGCCCAAGATCCTCTCCTACCTGGGATTCGA
CGCGGAGCAGAAGCTCCTTTGAGAGCGAGGCCGACGAGCCGGTGAAGCTCCTTGAGAGCTGGAGATCCGCATCAGCCTGG
AGCTGAAGAACACGC-----------------------------------------------------------------
TGGACAAGATGGCGGCCTTGCTGCCGCACGCCCGGGAGGATGTGGAGGACATCCTGGACGGTGGCGCTTGGAGCGAGGCC
GACGAGGCGGTCCAGCAGGCGGCGGAAGCCCCGGTCGAGGATTGTACGGCGCAGCGGCTTGGCTGCCTCCGCGTAGCGCA
CAACGAAGACGGCGTCGGAGACGGAGGAGGAGGACGGAAACGGCGC-GGTGAAGCTGTGGCTCCTCTGCTCCGCCGGCTC
ACGCTCGTACTCACGCTCTTCTT---------------GAGGCCGGGCCGGCCGTGGCCTGAGGCGGGCGCGGCCTTGG-
----------------CACGGCTGGAAACTTTTTGACCCCCAAGCCAAAAAT-TCCACGTGCAGT-CCCCAGGCGGCG-A
AAAAATGCCTCGTGGGGGGCTCAACGGCTGGAGATGCTCTAAG-------------------------------------
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>chr2A_210
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--------------------------------------------------GCCCAAGATCCTCTCCTACCTGGGATTCGA
CGCGGAGCAGAAGCTCCTT------------------------------------GAGCTGGAGATCCGCATCAGCCTGG
AGCTGAAGAACACGCTGGAGGCAGTAGTTGAGCAGAGGATGATGCAGAGAGGAAAGAAACGAAATCTGAAGTGGCTGCGC
TGGACAAGATGGCGGCCCTGCT-------------------------GACATCCTGGACGGCG--GCTTGGAGCGAGGCC
GACGAGGCGGTCCAGCAGGCGGCGGAAGCCCCGGTCGAGGATGGTGCGGCGCAACGGCTTGGCTGCCTCTGCGCAGCGCA
CAACGGACACGGCGTCAAAGATGGAGG-GGAGGACGGAGACGGCGCCGGTGAAGTTGTGGTTCCTCTGCTTCCCCGGCTC
GCCCTCGCGCTCATGCTGCTCTGCTAGAGCTCGGCGGCGAGGCCGGGCCGGCCGTGGCCTGGGGCGGGCGCGGCCTGGGC
ACAGCTTGGGGGTGGACACGGCTGAAAACTTTTTCACCCCCAAGCCAAAAAT-TCCGCCGGTAGGCCCCCAAGCGGCGAA
GAAAATGCCTTCT-GGGGGCTCAACGGCTAGAGATGCTTTAAGCGCTT--------------------------------
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>chr4B_735
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--------------------------------------CTCAGCCCTTCTTCCTGATTTCCATTCCCACCCGCGCGGGCA
GACGCGATCCGCGCCCCTA-CCGCTCGACCAATAGGAACCAGCCCCACCTCGATCCAACGGCTAGGGCCATCGCGCTCGC
CCCTCACGCGGATCGCTCCCCAATCCAACGGCTCCCGCAACCGTCCCCCAGCTCTATATATCCCTGCCCGCTCGTGTCGT
CCCAATCCATCCAATTTCAGGCGACAGAAAACAAAATCCCCAAATCCATCTTCGTCCCCGGGAAAGAAAGAGAGAGAGAG
AGCAGCCGAGATGTCTGGGCGCGGCAAGGGCGGCAAGGGGCTCGGCAAGGGCGGGGCGAAGCGGCACAGGAAGGTGCTGC
GCGACAACATCCAGGGCATCACGAAGCCGGCGATCCGGCGGCTGGCGCGTCGGGGCGGCGTGAAGCGCATCTCGGGGCTC
ATCTACGAGGAGACCCGCGGCGTGCTCAAGATCTTCCTCGAGAACGTCATCCGCGACGCCGTCACCTACACGGAGCACGC
GCGCCGCAAGACCGTCACCGCCATGGACGTTGTCTACGCGCTCAAGCGCCAGGGCCGCACCCTCTACGGCTTCGGCGGCT
AGGCTTTCCTTTCCTCGTAGCGGCTTGTTTAC----GGAGTGCCTGTGCATCCTGGCGGT-------GTTTGGTGTCGAA
TGTTGTGTTCCTGATGTAACAGTG-CC-TGTTGCAGTGAAGTAAATCCTGGTGTCTTATTTGCAAGAATGCAGTGATTGT
GCCCCTTTTAATCCAATGCCAGAAATGCGTGCGCTTCTC---TTTTGCGGCTGATTTCTTCTTTGGATAATTGCTTTGCT
CCGGTTCTTGCAGCTGCAGTGGCATGCCAGTTCT-----------------CAAATTATGCACGTTCCGGCTGAAAGTCT
GAAACTGCCAAATTGGTGATGGCGCTTCAACATGTT--------------------------------------------
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---TTAGCTGTTTTTGAATTGCTATAGGTCTT-GTACAATGCTAGGTGCTTAGAAAAATAAATCGATTTTTTCTAAGACA
CTTCTAGAGGAGAG--------ATGCTTAATTAAGCGTCTATCTTGTACTACATCTTGTACAAATAAGCACCGGTGTTTA
AGAAAACCTGATTTATTTCTCCAAACACCTCTCCTAAA------------------------------------------
-------------------------------------------TATCTTGCATTGTACAAGGTCTAAGCTGTCTTTCCAG
CAGTAAGGATGTAGTATGAGTAACATAGAAAACACAAGATGGACAACACACATCTTTCTTCAGATTTTGACACCGATAAA
CAGATATAAACACAATGATCACCTTCAAACTGATGCAGGTTAACTTAGCTGTACATGAAGCCAGTTTTGGCACCAACGAC
ATACACAGACTACTTC--ACAAAAGAATGGAACACAAACAAACAGCAGCTCTCTTCTTCATGCAGGTAAGCA-CATGTAC
AGTGAGGTTT
>chr4A_735
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--------------------------------------CTCAGCCCTTCTGCCTGAATTCCATCCCC-CCCGCGCGGGCA
GCCGCGATCCGCGCCCCTACCCGCTCGACCAATAGGAACCAGCCC-ACCTCGATCCAACGGCTAAGGCCATCGCGCTCGC
CCCTCACGCGGATCGCTCCCCGATCCAACGCCTCCCGCGACCCTCCTCCAGCTCTATATATCCCCGCCCACTCGTCTCCC
CCCAAACCATCCAATCCCAAGCAACAGAAAACAAAATCCCCAAATCCATCTTCGTGCCCGGGAAAGGAAGAGAGAGAGCG
----GCGGAGATGTCTGGGCGCGGCAAGGGCGGCAAGGGGCTGGGCAAGGGCGGCGCGAAGCGGCACAGGAAGGTGCTGC
GCGACAACATCCAGGGCATCACGAAGCCGGCGATCCGGCGGCTGGCGCGCCGGGGCGGCGTGAAGCGCATCTCGGGGCTC
ATCTACGAGGAGACCCGCGGCGTGCTCAAGATCTTCCTCGAGAACGTCATCCGCGACGCCGTCACCTACACGGAGCACGC
GCGCCGCAAGACCGTCACCGCCATGGACGTCGTCTACGCGCTCAAGCGCCAGGGCCGCACCCTCTACGGCTTCGGCGGCT
AGGCTTTCCTTTCCTCGTGGCGGCTTGTTTACGGAGGGAGTGCCTGTTCATCCTGTTGGTGTTGGTAGTTTGGTGCCGAA
TGTTGTGTTCCTGATGTAACCGTGCCC-TGTTGCAGTGAAGTAAATCCTGGTGTCTTATTT-CAAGAATGCCGTGATTGT
GCCCCTTTTAATCCAATGCCAGAAATGCGTGCGCTTCTCTTCTTTTGCGGCTGATTTCTTCTTTGGACAATTGCTTTGCC
CTGGTTCTTGCAGTTG-----------CAGTCGTGTTGTTTTAGAGAACTCTAAATTATGAC------------------
----CTCCCAAATTGGTGATGGCGCTTCAACATGCTCGCAGAAGGAAATATTAGCGGTGCTTTTTCCCTTGTCACCAATG
TTTAGTTGGAATGGACAACCAGGATTGCAATTTGCGTTCGTTGTATTTTCTGGATTGTTGAGAAAGAAAACTAGGCTGTT
GTTTTTGCTGTTTCTGAATTGGTAT-------------------------------------------------------
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-----------------------------------------------------------------AAGCTGTCTTACCAG
CAGCAAGGATGTA---TGAGTAACATAGAAGACACAAAATGGGCAACAAAAATCTTTCTTCAGATTTTGACACTGATAAA
CAGATATAAACACAATGATAACCTTCAAACTGACGCAGGTTAACTTAGCTGTACATGAAGCCAGTTTTGGCACCAACGAC
ATACACAGACTACTTCTCACAAGAGAATGGAACACAAACAAACAGCAGCTCTCTTCTTCATGCAGGTAAGCACCATGTAC
AGTGAGGTTT
>SNPs
SSS--------------S----S-----------------S-----------SS----------S---------------
----------------------------------------------S---------------S------S----------
----------S-------------------------------S-----------------------S-------------
--------------------------------------------------------------------S-----------
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---------------------S--S----S--------------------------------------------------
-------------------------------------------------------------S--S---------------
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----------------S--------SS-----------------------------------S-----------------
--S------------------------------------------------SS-----------S--S--------S---
----S----------S------------------------------------------------SS-------S------
---SS---------S-------------------------------S---------------S-----------------
----------------------------S---------------------------------------------------
---------S-----S---------------------------------------------------S------------
------------------------------------------------------S-------------------------
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-----------------------------------------------------------------------------S--
------------------------------S-------------------------------------------------
---------S--------------------S-S-SS--S---SSS-----------------------------------
---------------------------S----------------------------------------------------
------------------S----S----------------------------S---------------------------
------S------------------------S--------S----S----S-----------------------------
---------------------S------------------S---S------SS------------S----------S-S-
S--SSSSSSSSSSS-S-S--------------------S-----S-------------------------------SS--
-S--------------------------S---S-------S---------S--------S-----SS-S-------S---
-SSS-SSSSSSSSSSSSSSSSS----S---------S-S----S---------------------------S-S--S---
--------------------S---S--------SSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--S----------S------------S----------
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-------S---------------------S--------------------------------------------------
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>forward_309
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------------------------------------------------TCCTTGAGAGCTGGAGATCCA-----------
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>reverse_1782
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---------------------ACGCTTCAACATGTTCGCAC---------------------------------------
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