>input_sequence_84211
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------------------------------------------ATGTCGGGGCGCGGCAAGGGAGGCAAGGGGCTGGGCAA
GGGCGGCGCCAAGCGCCACCGGAAGGTGCTCCGCGACAACATCCAGGGCATCACCAAGCCGGCGATCCGGCGTCTCGCGC
GCAGGGGCGGCGTGAAGCGCATCTCCGGGCTCATCTACGAGGAGACCCGCGGCGTGCTCAAGATCTTCCTCGAGAACGTC
ATCCGCGACGCCGTCACCTACACCGAGCACGCCCGCCGCAAGACCGTCACCGCCATGGACGTCGTCTACGCGCTCAAGCG
ACAGGGACGCACCCTCTACGGATTCGGCGGCTAG----------------------------------------------
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>chr4B_1_TraesCS4B01G350700
TTGGCTTGTCAGCGCGGCGTCCAGCTGGCGATTGAGGTGGGCGCTCGGAGGATTGTCTTGGAGACAGACAATCTGGGAGT
CAAACAAACGTTATCTTCGACCGAGCTAGCTAGATCCCGGTACGGCCCCCTCATAGAAGAGATTAAGGAGCTTCTTAACT
CTCGGGAGGATTTTCGTGTGCATTGGGCTAGGCGTTCCGCGAATCGCGCGGCACATAATCTAGCTAGGGATGGCTGCCTA
AATAAGTTGTGCAAGACCTGGTTTTCTGTTCCTCCTACTTGTATTCATGACATTGTTGTGGCTGAGGCCACTTAGTTAAT
AAATTGGCAGCGACGTTCCCCTAAAAAAATGTTCAAAACATATATTAAAAAAATGTTCAAAACATAAACGAAT-AAGCCA
GTACCCAGGCCTCCCGAAACGAGCACGCATTCCTCACATAAGGGCATGTACAATGGTCGATAAGGTAGTCTTATCTTAAA
TCTTGCATGTAATTTAGAGATGACAGAAAAACATGTCTACAATGAGTCATTTTTTAGCCTTATCATCAATAACTAGTTAT
TCCTAAAATTGTGGTGAGACATATTATGCTAAGAGATCATCTCTTGCCTTCTCTTAATTAAGAGAAGACAAGCCTTCTCT
TATGATTTCTCTTTCATCCACCTCATCATTTATCCTACGTGGCATTGCTAAGATAGAACCATTGTACATGCCCTAAACAG
GCTCTGCGGTTTCTCAAAAAGAAAAGAAAAAACATAAACACGCGCTGCCACGTCACGGATCCGGCCTTCCCACTACCAAC
CAATCACATCCCCGCATTCCCCAGTCCCACGGATCGCGCCCCTCTCGTTTTGACATCGCGCGCCGAACGGCCGAAAGTCC
CCACCTGTCTGCCGCCATAAATACACCCCACCACC-GCATCTTCTCCACACCAAAAGATCCCCAATCCCAAATCCTCCAC
CTCCAAGCAGCTCAACCTCTTCGTTCCGTTGGGAGCTCAGCAATGTCGGGGCGCGGCAAGGGAGGCAAGGGGCTGGGCAA
GGGCGGCGCCAAGCGCCACCGGAAGGTGCTCCGCGACAACATCCAGGGCATCACCAAGCCGGCGATCCGGCGTCTCGCGC
GCAGGGGCGGCGTGAAGCGCATCTCCGGGCTCATCTACGAGGAGACCCGCGGCGTGCTCAAGATCTTCCTCGAGAACGTC
ATCCGCGACGCCGTCACCTACACCGAGCACGCCCGCCGCAAGACCGTCACCGCCATGGACGTCGTCTACGCGCTCAAGCG
ACAGGGACGCACCCTCTACGGATTCGGCGGCTAGGCCGCGCTCTCGCGTGTTAGTCCGGTGCCGGTGTTAGCCATTGTTA
GGGTTACCGATGTGATGTCTCGTGGTGTGGAGTGGGATGTGATGCATATGGTTTCAGATTGATCAATGGATTCACTGTTG
CTGTTCAGTATATCTCTCGTGTGGTTCGTCTGTCGTTCTGTGTTCTGTTTCGTTCTGCCCGCCACGAATCCGTCCATGGC
CCAGGCCTCGGCCT------------------------------------------------------------------
------------------------------------------------------CGGCGCCGCCGACTTCGCGGGGGCGC
CCAGGGTCGTCGCCGCGGAGGCCGACGCCGACCTCGTGCTGCTCCGCTACGCGCGGCTACGCTTGCGCTGCTTCGACTAC
TTCCTCTACACGCCGCACGGATCACGCTCGGAGGCCCGCGCGGTA------------------------------TCCTC
GCCTTCAACGTGTTCGACGAAAGTCCCGTGCTCCAGGACGTGCCTCTGCCGCCGCCTGCGAGGGGGAAAAGGCTATCTTA
CGCCTACCACAAGCGCTGTTCCTTCCCGATCCGGGACATCACCGTCAGCCCAAGCAAAGATTGCATCAAGCACATCGAGA
TGGAAACTGGCCTGCCAAGAAGGGAGAACGTGGTGACCTCCGAGGAGTACCGCCGA-------------------GGTTC
CACCAGAAGCCACGCCCTGAACCCCGCTGTGGTGGCTGGAGGGCCACCACATGGAGCATGCCGATCCTGATTCCATTCTG
TCATGGGAGGACTGGAGCCCTGGCTGCACCGGATGTCG--ATGAGATTATCGTCGGGCCAATACATTCCAAGCTGCTGCC
ATGGACGCCAGGCAGTATCAGTGACAGTGAGCCCACGGAGGTGACGTTGCTGCCAGTCCTCAACACGGGTTTACCCGCAA
TGAGTATGGATGATGATGTTGTGTACCTGCTGTCCAAGGCATGCTCCTCTGGTGAGATGGAAGTGGTGATTGCTGTTGAC
TCGAGGAAGAAGACGCTGCGAGGAGTGGGCAAGCTTGTTGCCGGAAAAGACTTCACTGACATGCGCAACCTCACCACCAA
GATCT
>chr4D_370
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-------------------------------------------------AAAATGTTGAAAACATAAACGAATTAAGCCA
GTAGCCAGGCCTCCCGAAACGAGCACGCATTCCTG---------------------------------------------
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-------------------------------ACATGTACGTGCTCTGCCATGTCACCGATCCTGCCTTCCCAGTACGGAC
CAGTCACATCTCCGCA-TCCCCAGTCCCACGGATCGTGCACCCGTCG-TTTGACATCGCGCGCCGAAAGCCCCCGGCCCC
T----------CCGCCATAAATTCTCCCCACCACCAGCTTCTTGCCCACACCAGAAATTCCCCAATCCCAAATCCTCCAC
CTCCAAGCAGCGCAGCCTCTTCGTCCCGTTCGGAGCTCAGCAATGTCGGGCCGCGGCAAGGGAGGGAAGGGTCTGGGCAA
GGGCGGCGCCAAGCGCCACCGGAAGGTGCTGCGGGACAACATCCAGGGCATCACCAAGCCGGCCATCCGGCGTCTGGCGC
GGCGGGGCGGCGTGAAGCACATCTCGGGGCTCACCTACGAGGAGACCCGCGGCGTGCTCAAGATCTTCCTCGAGAACGTC
ATCCGCGACGCCGTCACCTACACCGAGCATGTCCGCCGCAAGACCGTCACCTCCATGGACGTCGTCTACGCGCTCAAGCG
ACAGGGACGCACCCTTTA--------------------------------------------------------------
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>chr4D_996
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-------------------------------------CAGCAATGTCGGGCCGCGGCAAGGGAGGCAAGGGGCTGGGCAA
GGGCGGCGCCAAGCGCCACCGGAAGGTGCTGCGTGACAACATCCAGGGCATCACCAAGCCGGCGATCCGGCGTCTGGCGC
GGCGCGGCGGCGTGAAGCGCATCTCCGGGCTCATCTACGAGGAGACCCGCGGCGTGCTCAAGATCTTCCTCGAGAACGTC
ATCCGCGACGCCGTCACCTACACCGAGCACGCCCGCCGCAAGACCGTCACCGCCATGGACGTCGTCTACGCGCTCAAGCG
ACAGGGCCGCACCCTCTACGGATTCGGCGGCTGATCT--GATCCCGCGTGTTCCTCCGTTGTTAG---------------
GGGTTGCCGATGTGATGTA-----------------ATGTGATGCGCATTGTTTCAGATTAATCAATGGATTCGCTGTTG
CTGTTCAGTATGTCTCTCGTGTGGTGCGCTTGTCGATCCGTGTTCTGTTTCGTTCTGCCCGCCACGAGTCCGTCCATGGC
CCCGGCCTCGGCCCTCGGGAAGACGTCCCGCAGGATGTCGCTCATGGACGACGGCACGCTCAAGGAGCCGGTGGTGTTCA
AGCTCTGCCTGTACCGCTCCGGCGAGGGGTGGCGCTCCAGAATGGTGCAGGTGGCGGAGCCGCGGAGGGACAGGGTGTGC
CCGGTGGCGGGGGCGGGGCGGTACCATGAGACGACCAAGGC---------------------------------------
-------------------GATCACGCTCGGAGGCCCGCGCGGTACGGTCGGCTGGGTCGACCTCTGCCGCAGTATCCTC
GTCCTCAACGTGTTCGACGGAAGTCCCGTGCTCCACGACGTGCCTCTGCCGCCGCCTGCGAGGGGGAACTGGGTATCTTA
CGCCTACCACAAGCGCTGCTCCTTCCTGATCCGTGACATCACCGTCAGCCGAAGCAAAGACTGCATCAAGTACATCGAGA
TGGAAACTGCTCTGCCGAGAAAGCAGGAGGTGGTGACCGCTGAGGAGTACCACCCACCTGAGACCTACCTGGAATGGTTC
CACGAGAAGCCACGCCCTCAACCCCGCTGCGCTGGCTGGAGGGCCACCACATGGAGCATGCCGGTCCCG-----ATTCTG
TCATGGGAGGACTGGAGCCCCGGCTGCACCGTCAATGCCAATGAAATCGTCGTCAAGCCAATGCATTCCAAGCTGCTGCC
T---------GGCAGTATCAGTGACAGTGAGCCCACCGAGGTGACGTTGCTGCCAGTCCTCACCACGGCTTTCCCCACAA
TGAGTATGGATGATGATGTTGTGTACCTACTGTCCAAGGCATGCTCCGCTGGCGAGATGGAAGTGGTGATTGCTGTTGAC
TTGAGGAAGAAGACGCTCCGAGGAGTGGGCAAGGTTGTTGCCGGAAAAGACTTCACTGACATGCGCAGCCGCACCACCGA
GATCT
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------S----------------------
---S------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----SS--SS--S------S-----S-----S---------S---SS--
--S-------S-----S-------------------S--S--SS---S-------------------S-S--SSSSSS--
SSSSSSSSSSS-----------S-S-------------S----SS--------S--SS----------------------
-----------S--S---------S-----S-------------------S-----------------------------
------------------------------S--S-----------------------------------------S----
-SS-----------------------------------------------------------------------------
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--------------------------------SSS-SSS-S--S--------SS----S--SSS-SSSSSSSSSSSSSSS
-----S------------SSSSSSSSSSSSSSSSSS---------SS--S----------S------------S------
-----------S-------------S--SS-----S--S----------------------------S------------
--S----------S------------------------------------------------------------------
---------------------------------------------------------S-----S--SSSSSS---S-S--
--S-S-S--SS-S--S--S--SSSSSSSS---SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSS-------------------------------------------------------------
-S-S---------------S---------------S--------------------------------SS--S-------
------------------S-------S------S----------------S---------S---------S---------
---------SS-----S----S-S--S-S---------S-S----------S--S-------------------------
---S--------------S----------S-S-------------------------------S---S-SSSSS------
--------------------S----------SSSS-SS------S--SS-----SS------S-----------------
SSSSSSSSSS--------------------------S-------------------------S-----S---S---S---
----------------------------S------------------S----S---------------------------
-S---------------S---------------S---------------------------------S--S-------S-
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>forward_817
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-----------------------------------------------------------------------------AAC
CAATCACATCCCCGCAT---------------------------------------------------------------
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>reverse_1746
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-----------------------------------------------------------------CGCTGCTTCGACTAC
TTCCT---------------------------------------------------------------------------
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