>input_sequence_84208
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-----------------------------------------------------ATGGCGGCGGGCGGCGTGTGGGTGTTC
CGGAAGGACGGGGTGATGGAGCTGGAGCGGGAGGTGTCGAGCCGGAAGGCGCTGGTGTACGTGCCGGCGAACGAGACGAT
GCGGTCGCTGCGGGCGCTGGAGCGGCGGCTGGGGTTGCTGGGATGGGAGCGCTACTACGAGGACCGCGCCGTCGTGCAGC
TCCACCGCCGCGACGGCAGCCTCGACCTCATCTCGCTGCCGCGAGACTTTGCGCGGTTCCGCTCCGTCCACATGTACGAC
GTCGTCGTCAAGAACCGAGGCCACTTCAAGGTCGTCGACCTCTAA-----------------------------------
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>chr4B_1_TraesCS4B01G308700
TGCCCACTACTGTTACCTGTGTAGCCGTGGCGAGCTCCTTTTAGCACCCGCCACTGCTGGTTTTCAAAAATAGTTGTGGC
GGGTGCCCCGCCTCGTCCGCCACTCATTTGGTTTCACCTATAAGCTCTTTCCAAGTAGTGATGGCAGGGCAACTGGCGTC
GTGATTAATGGCGGGCGGCAGATAGACGGGCAGGTGGCACCGGCTCGCCGTTCCTCGGCAGCCGCACACATGTTAAATGT
AGGCAAGCGGACGGACGGGCTGTCATTTGAACGCGGGTAGTTGCATGCACCGGGAAGCGGCGCGGGCAGCGCTCTCGGCC
GGCGTGTGGTTTCAATATTGAGCGTTCTGAGAGGTCGCAATGCTCTGAGCCGGCATGAATGTGGCACTGATCTTTCAGAC
GGGAACGCACGCGGGCAAGGGTAAGGTTTTTGGGTTGGTCAGGGTAGTTAGGAGCGAACGTGTTAGCGCTCGGAACACCA
GCAAAGATCTTCAATTTGTCTTGGACTTGCAGAAAAACATGTCTAGGCCTGCCTGTGGAGCGACGCAGA-----------
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-----------------------------------------------------------ACCGTGTTAAATGACAAAACA
CATATGAACCGCATGGTCCGAACCATTACGGGTGGTACTAAGGTCGGGCATCGGAGATGCGCTAAGAATAGCATC-GCTC
AGGAGCAATGATATCGCTGTCGACTCGCC--GGCTTGTGGCGGAAGTTGGTATATAATTTGTACCGCGCGGCTCGAATTG
GAAACTACAAACGTTGCCCGGATTGGGCCGGGGTAAATTTGCTGC----------AGCTAGCTAGCTCTAGCGTCCACGT
GAAGCCCTTCGACCTCCTGTGCATACGCTGGCCCACGTTACTTACTGCCTTGCATTATTGGTACGT---ACTCCGCCGTG
CAACGGCAATGGTGACGACGGCGATTTTATATTTAGACATGTGCCTCACTCA----CGCACGCACTCATCTGCAGCCTGC
AGGAGCCGCGTGCGTA---GCTAGAGCTAGCCAGAAAGAGCGGTACCGCATCAATGGCGGCGGGCGGCGTGTGGGTGTTC
CGGAAGGACGGGGTGATGGAGCTGGAGCGGGAGGTGTCGAGCCGGAAGGCGCTGGTGTACGTGCCGGCGAACGAGACGAT
GCGGTCGCTGCGGGCGCTGGAGCGGCGGCTGGGGTTGCTGGGATGGGAGCGCTACTACGAGGACCGCGCCGTCGTGCAGC
TCCACCGCCGCGACGGCAGCCTCGACCTCATCTCGCTGCCGCGAGACTTTGCGCGGTTCCGCTCCGTCCACATGTACGAC
GTCGTCGTCAAGAACCGAGGCCACTTCAAGGTCGTCGACCTCTAAGC-------------GTGCGTCTCACTCTCACCGG
CCAGTCAAGCTTGCAAGGTCTGTGTTAATCCCTG---TACGCGTGATCGATCGTTAGACATTTGTGTTTACCTCTAGACA
TCTACTACGTACCTACTTTCCCCGGCCAGTCCAGGTTGCAAGATGCGTCTGTGTGTCGATTGTTGTACGTGTGATCGATC
GTTGTGTAACAAATGTATGCCTTGTCCTGTATGACGTTTCCCGTGTTCTCGTACGCCTCTCAGCTAATCGTGTGGCATAT
GTGTGTGTGTCCCGTTTTTCTCTTTTCGCTGATGCCACCGAACTAAAGCTTCGAGGATTGCCAGTGTGAGCTACTCGTAT
TGACTCGAACTCGCTAATAGTAGTACTAATGTTTTTTTTTTTGTTTTTTTGTTTTTTTTGCGAATAAGAGTAGTACTCCC
TCCGATCTAAATTAATTGACGGATACTGATATAACTTTAAGTTGCATCAATTAATTTGGATCGAAAGGAGTACTAATGTT
CTTGTGTGGTTTTGTTTGTTAATGAAAGCCCTCCATTTTTAATTTTGAACGGTTTGTGTTGCCTCGAATAACCCGGCATG
GCCATATTCTGGTCCATCTGAAAATGCAGAAATGACATTATCTTTAGATCAAAACAAAATCATGATCCCATGATCCCCGT
AAGACTAATGTGTAACTGGATCGTTGTTTGGTCTATTGTGCACATTAATAACCCAGAGCAAAAGCTACTGACGTTGGGGG
CAAGAATAATCAAGCGGGTAACAAGTGAAATATATCGAACATAGCAGGGGTGGAGACAAGAGGTACATAATCTGGATAAC
TGAAGGAAAACCAGCGGCAGGTGATCTTCTCTTTGTCTTCACAACGGTGTTGACAGGATGCAGGCCTCCCCTGTCTGCTT
GCCTCTTCAGCGGCCTGTGCTTCGTGTGTCTGTCACCTTTGTTTTAGGATCTGGTTTTATGTTTACTGTCGGGATGCGTC
TCTTCGTTTGTGGATTATGTT
>chr4A_545
CTAGAGCTAGCCAGAGAGACCGACCATGGCGGACGGAGGCGTGTGGGTGTTCCGGAAGGACGGGGTGATGGAGCTGGAGA
GCGCGGCCGGGTCGACGTCGAGCCGGAGCGGGCCGGGGAACAAGGCGCTGGTGTACGTGCCGGCGAACGAGACGATGCGG
TCGCTGCAGGCGCTGGAGCAGCGCCTCGGCGCGCACGGCTGGGAGCGCTACTACGAGAACCGCGACGTGGTGCAGCTCCA
CCGCCGCGACGGCAGCCTCGACCTCATCTCGCTCCCGCGGGACTTTGCGCAGCTCCGCTCCACCCACATGTACGTCGTCG
TCGTCAAGAACCGAGGCCACTTCAAGGTCCTCGACCTCTAACATCTACTAGTAGTCTGTAGTAGTAGTATACTCACGTAC
GCAACCACTGCTTTCCCGGTCAGTTAAGCTTGCAACCTTAAGCTCTGTGTGCATGCTAATTCACTATACGGCTGGTATAT
CGTTGTGAGTATACTAACAATATATCTATTGTACTATTTGTATGGTATTATCCGAGTTCGTGCCCGTCTCGAGTACTAGA
GTGACTATTTCTCAAAGAAAAAAAAAGTACTAGAGTGACAAGCTATACTCGTTATGATTGAATCTTGATCGTTTTTTGTG
TGCTTGTTTATGTTAATTAAACCCTTGTGTTTCAATGTCCAACTGTGCGTACATATGCTGGCTATGAGTAACTGACGTGG
CCCAGCTGGCCCCATGTTCGTGCATTCAGGCTGAAAACGTATTGGCTGGCTAACAGGAGCAATCAAAATTGCTATTCCTA
GGAGCCGATTCCACGGAAATGCTACGTGCTGTGAGATAACCAATAACCGTCAAGAAAAGAATTGGGGAACAACTGAACGC
AGATTGAAGTGATGTGTAAGAGTTTGGTAAAACCAATGTGTAAGGGCATCTCTAATGCCGATTCTTAATTTTTTTCCCGC
GTCCGTCCGTGAATAGGGAGAATCAGTTTTCGAACATGGATGCGGGAGCCGGCCATCCAATGCTATCCGGATACAACTGA
AACAAGATTTGAACAAAACGGACAAAATTCATGAAAAACGGCTGGATTTCGTATAAACGAACGAAATTCATAATATTCGG
ACATATTTTAACTAAACCCGGCTCTAATCTAAACCTAATCTAAATGATCGTTGGCGTCTGCCCATGTGTGACCACCGCGA
AAATGTAGCTCCAGCTCCGCCTTCATAGTCTCCAGCTCTGCCTCCGCAGTTTGAGCGACTAATCGGCTGACGATGTTGAT
CCCAACCAGCTTGGCTTCAACGGGAGAGGAGGAGTGGTGGCCTTCCTGGGACCTGAGTGCCGGCAAGCTCCCATGCTCTA
CTCTTCCTGGTTGCCGGCGGTGCTCGTGGACGTGCCAACTTCATGGTCGTGGCGGTGGGGGCGCGACCGTGGCGGAGCTG
ACGATGTCCTTCACGTTGTCCCTCTTGTCGAACATCTCATCTGTCGTCTCGTCCATCTCCTTGTAAGCATCCTGTAAATC
CACTTGATACTGGATGTACCACCAGCGGTCATGGCGGATTTCGCGGGCCGTGCAGTAGGAATCAACCAGCGCCTCCTGCT
CGGCCATGCCCACGTCCAGCACTATGGTCGTGCCGGCGGCGAGTTGCTCCTCTGCGCGCCGGTGCTCGATGAGGAGGTGG
AGGTTGTACGTCTGGTCGGCTTGCGTCTGCCGGAACTTGGCCTCCGGCTCCTCCAGTACCATGTCCGCGCAGTGGGCATG
AGCCTCGTTGATGGAGTTACCGGCATGTAATGGTGAGGGTGGCGCCGGCTCGTCCTCGGACATGTCCTTCATTGAGACAT
CTGCAGCGCCGGTCTCCGTCTGTCTGTTGGCCTGCCAGCCGGCTGCAATGAGGTGATTTTCTTTTTCTTCTCGGATGATT
GGCCGTCCCAGACGGCTTTGGAGTTTGAGGAGGCCATGGAGGGCTGGGACGGACCTACGTACACGCAACCGGTATCACAG
GCTAACCGGTATCACAGGACACCGGGTAATTTTTATGATTACGTGTATCTAAGTAGCGCAAGTTTTTTTGTTTGAGACGA
CATATAAGTAGCGCAAGTAGTCGTGTGACACCGGTAAAAGGTATTGATGGACACCGGCTACACCCATCTGATCTGACGGC
CCATGCGGTCAACTAATACGTGATCAGTCTGATTGATTGAGTGCCCCTAAGAAAATCTGACTGAATGACGTGTCGTGGGC
CTGTCGCCTACTGGTTTCTCCCCTCCTCTGCCTGATTCTTTTTTTTTTGCGGGGTCCTCTGCCTGATTCCTGTTCGGCAA
CCCGCCGCACACCTTGCGGCATGCCGGAGTTTTTTTTTTGCGGGGTAAAAAGATTGTATTACTCAAGAGCACACGAATTC
GTCCCTACACAGACTAGGGACATTAGCAGGTCCGGAGTTGCTAGATCGCTGGAGAAACATTACGGCAAAGGCAACTCGAT
CATCCCTTCATGCATCTATTCCATCTAATTATTGCCATCCAATTGGATTATTGTGAATTTCTATTTTTTGGAGTAATTCA
CATCTGTTTGAGAATTCTATTTCTATGACATCTCAATTTTTATAGTGGTTCATATCTATTTGCAAATTAGATTACTGTGA
TATTTTAGTTTTGGAGTGATTTTCCAATTTTAACAATCATCTTTGTTTTCATAGTTTGGAGTCTTTTATGCTCTACTACT
ATTATTATTCTACGGTATATAATCAACTAGTATCTCAAATGGAACGATTTATTTTACCCACTTGGTAAGCATTTCATTGT
TGAATATTTTTAACTATTGAGTTTTAATTTTTATGCATGGCTATATAACATTACTTGATATCCATGCATATGTGATGGGA
CTACACTGGAACACCGGGACATTTTCCTCCTAGGTCCACCCCTGATGGAGGGCATGTTGCAGAGAGGAGGAAGGGAGTGG
AGGATAATGGATGCGGCTATGGCCGGGCCTACGGTTTCTATAGCAGGGAGATGACAGGGCAACCGGCGACGTAATTAATG
ACGGGTGGTAGACGGACGAACGGGTGGCGTCGGCTCATCGTTCCTCGGCAAACACACAAATGTTAAATGTAGGCAGGCAA
ACGGACAGGCTATTGTTTGAACGGGCAGCCACATGCACCAGGAAGAGGCGCGGCCGGCGCGTCGTTTTTGATGCCTGAGC
GTTATGAGAAGTCATGTCGCTTTGAGCCGGTATGAATGCGGCACTGATGCTCTGGAGCGGCACTGCTGACCTTTTTGAAC
GGGGGCGTAGGGTTTTTTGGTTTGCCAAATTAGTCAAGACGTGGCAGTGATGCGGCACAACCGTGTTAAATGGCAAAACA
TATCCACATCGTGCGGTTCGGACTGTTACGCGGCAGTACGAGGGTCGGC----GAAATGCTTTAAGAATAGCATTTGCTC
AGGAGCAATGATATCGTTGTCGACTCGTCGGGGCTTGTGGCGGAAGTTGGCA------------------GCTCGAATTG
GAAACTACAAACGTTGCCCGGATTGGGCCGGGGTAAAGTTGCAGCTAGCTAGCTAG-----------CTAGCGTCCACGT
GAAGCCCCTCGACCTCCTGTGCATACGCTGGCCCACGTTACTTACTGCCTTGCATTATTGGTACGTAGTACTCCGCCGTG
CAACGGCAATGGCGACGACGACGATTTTATATTTAGACATGCGCCTCACTCAG---------------TCC-------GC
AGGAGCCGCATGCGAC---GCTGGAGCTAGCCAGAAACACCGGCACCTCATCGATGGCGGCGGGCGGCGTGTGGGTGTTC
CGGAAGGACGGGGTGATGGAGCTGGAGCGGGAGGCGTCGAGCCGGAAGGCGCTGGTGTACGTGCCGGCGAACGAGACGAT
GCGGTCGCTGCGGGCGCTGGAGCGGCGGCTGGCGTCGCTGGGATGGGAGCGCTACTACGAGGACCGCGCCGTCGTGCAGC
TCCACCGCCGCGACGGCAGCCTCGACCTCATCTCGCTCCCGCGAGACTTCGCGCGCTTCCGCTCCGTCCACATGTACGAC
GTCGTCGTCAAGAACCGAGGCCACTTCAAGGTCGTCGACCTCTAACTCTGTAAGCATCCTGTGCGTCTCACTCTCACCGC
CCAGTCAAGCTTGCAAGGT-------------------------------------------------------------
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>chr4D_624
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-----------------------------------------------------GAAATGCCTTAAGAATAGCATT-GCTC
CGGAGCAATGATGTGGTTGTCGACTCGTC--GGCTTGTGGCGGAAGTTGGCACATAATTTGTACCGCGCTGCTCGAATTG
GAAACTACAA-CGTTGCCCGGATTGGGCCCGGGCAAAGTTGCAGCTAGCTACTGTAGCTAGCTAGCTCTGGCGTCCACGT
GAAGCCCTTCGGCCTCCTGTGCATACGCTGGCCCACGTTACTTACTGCGTTGCATTATTGGTACGT---GCTCCGCCGTG
CAACGGCAATGGTGACGACGGCGATTCTATATTTAGCCATGTGCCTCACGCAAGCACGCACGCACTCATCT-------GC
AGGAGCCGCATGCGACGACGCTAGAGCTAGCCAGAAAGAGCGGTGCCACATCGATGGCGGCGGGCGGCGTGTGGGTGTTC
CGGAAGGACGGGGTGATGGAGCTGGAGCGGGAGGCGTCGAGCCGGAAGGCGCTGGTGTACGTGCCGGCGAACGAGACGAT
GCGCTCCCTGCGGGCGCTGGAGCGGCGGCTGGGGTCGCTGGGATGGGAGCGCTACTACGAGGACCGCGCCGTCGTGCAGC
TCCACCGCCGCGACGGCAGCCTCGACCTCATCTCGCTCCCGCGAGACTTCGCGCGGTTCCGCTCCGTCCACATGTACGAC
GTCGTCGTCAAGAACCGAGGCCACTTCAAGGTCGTCGACCTCTAAGC-------------GTGCGTCTCGCTCTCGCCGG
CCAGTCAAGCTTGCAAGGTGTGTGTTAAACACTGTACTACGTGTGATCGATCATTAGACATTTG----------------
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>SNPs
SSSSSS---SSSSS-SSSSSSS-S-SSS-SS--SSSSSSSS-SSSSSSSSS-SSSSSS-SSSSSSSS-SSS--S--SS-S
-S-S-S--S-SSSSSSSSSSSS-SSSSSS--SSSSSSSS-S---SSSS-SSSSSSSSSSSSS-SS-SS-SS--SSSSSSS
SS-S-SS-S-SSSS-SS----SSSSS---SSS-SSS-SSSS--SS---SSS-S-SS-SSSSS--SSSSSS--SSSSSSSS
SS--SSSSSSSSSSS-SSSSSSSSSS-SSSS-S-SS-SS-SSSSS---S-S-SSSS--SS-S-SSS--SSSSSS---S-S
SSSSSSS-SSSSS-SSSSSSSS-SSSS-SSSS-SS-S-S-SSS---SSSSSSSSSSSSSS--S-S-S-SSS--SS-SS--
-SS-S-S-SSSSSSS-SS-SSSSSSSSSS---SSSSSS-S--SSSS--SS-S-SSSS-SS-SSSSSSS-SSSSSSS-SSS
SSSSSSSSS-SS-S-SSSSS-SSSS--SSSSS-SS-SSSSSSSSSSSSSSS--SSSSSS-S-S-SSSSS-----------
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------------------------------------------------------------------------S-------
S--SSSS-S--SSS---S--S--SS-----S-SSSSSSSS---SSS---SSSS--S----SS------------S-----
----------------S----------S----------------------S-S----------------S----------
-------------------------------------S----S-------------------------------------
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-----------------------------------------------------------------------SSSSSSS--
---------S----SS-------------------------------S----S---------------------------
----------------------------------S---------------------------------------------
-----------------------------------S--------------------------------------------
-------------------------------------S-----------S------------------------------
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-------------------S--------S-S----------S----------S-----------SSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSS
>forward_3413
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---------------------------------GGTACTAAGGTCGGGCATCG---------------------------
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>reverse_4453
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----------------------------------------------------GAGGATTGCCAGTGTGAGCT--------
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