>input_sequence_84204
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--------------------------------------------------------ATGTCGGGGCGCGGCAAGGGCGGC
AAGGGGCTCGGCAAGGGCGGCGCCAAGCGCCACCGCAAGGTCCTGCGCGACAACATCCAGGGCATCACCAAGCCGGCGAT
CCGGAGGCTGGCCCGGAGGGGCGGCGTGAAGCGCATCTCGGGGCTCATCTACGAGGAGACCCGCGGCGTGCTCAAGATCT
TCCTCGAGAACGTCATCCGCGACGCCGTCACCTACACCGAGCACGCCCGCCGGAAGACCGTCACCGCCATGGACGTCGTC
TACGCGCTCAAGCGCCAGGGACGCACCCTGTACGGATTCGGCGGCTGA--------------------------------
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>chr3D_1_TraesCS3D01G340800
TGCATTTGAAGCTTTTCTTTGATAATTAAAAAATACGTTTGAAGCTAATGTTACACTAAATCACAAGACGGCTTGAGTAA
TGTGCTGCCAACTCGTGCTCTCTCCCTTTGCGTGTCCTTCAACTATTAAAAAGGACAGAGGTATGGCGAGGCAGGCCAAC
TGCTATATTGCAGGCTGGACAACATCATCTGCCTACGCAAGCCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCGGGACAAAGTGAGA
TGACACACAGGTAGTGTAGACGCGAATCCCTTCGCTCTGAACCGTAGGATTGACCCTCATCGATGGCTCAATTTGCTTCT
CAAACCTAGGATTCAAATTTCAAAACTCATACACTATATAATACAGTAACAATACAAGTATAGATATTGGCTCCCTCGAG
CGACTTTTTGCAACAGACAGTATGAACCAGCCGAGAGACGAAGCGAGTATCTAGTCACTGTCCAATCCCGCTTCATTTTC
GTCCCACTATGCAAACTGGGCGCCCAAAAATA-CAAAAATTCGGACCCCCGCCTGCCACGTCACCGATCCGCGTCCAGTC
CACGGCA--CGATCCGCGGCATCTTCGGGACAAGCAGCCTCAGCCGTCCATCTCCTCTCCATCGAACGGCTCCATCCGCC
TCCACAACCCCCGCTCACCCTTT-ATATACC--ACCCCTTCCCCCGTCTCACCTCACTCATCTCTTCCACCCACCAAACC
CCGCTCCAAAATCCCCAAATCCCCTCTCTTCC-GAAGCTACT---------CAGCCATGTCGGGGCGCGGCAAGGGCGGC
AAGGGGCTCGGCAAGGGCGGCGCCAAGCGCCACCGCAAGGTCCTGCGCGACAACATCCAGGGCATCACCAAGCCGGCGAT
CCGGAGGCTGGCCCGGAGGGGCGGCGTGAAGCGCATCTCGGGGCTCATCTACGAGGAGACCCGCGGCGTGCTCAAGATCT
TCCTCGAGAACGTCATCCGCGACGCCGTCACCTACACCGAGCACGCCCGCCGGAAGACCGTCACCGCCATGGACGTCGTC
TACGCGCTCAAGCGCCAGGGACGCACCCTGTACGGATTCGGCGGCTGAGGAGCCGCGGCGCTTGCTGGCCGGCCGTGGCG
CACAAGCCCTGGCTCGCGGTCAAGAAAGTGGAGGAGAGGAGAAAGCTGTAGTTGATCTGGGTTCCATGCCTTCTATGATT
AGTA---GTA--ATATCTGTAGTAGCAGTAGCTGGTTGTTCAATGGTTGCTTCAGTGTTCTGAATTTCTGATGGGCAAAC
ACTGTGTTTGCCGAGATATATGAATCCAGAGTTAAC-AAAATTGTCCTAAAACCATGGATTATTGCTAATGACGATGCTG
TTC--------------TGTTTTACAACTCTTTGTGCTCCTGCATTTAGCCTGATGCAAATC-----------CTGTGAT
ACGATTGTTTTCCGGCGGTTCTGCAT---TCTCTGTTCTTCAACTGCGTTCGCTGTCTATCCGATGGCGGTCTCCTGCAG
ATCCAGCGACTCATTGCTTGAATATTTTCTGCAAATCTTGCCGTGTCTAAATGTTACAATCTACACAG----TAGTTTTG
AACGCTCCATTAGCCGATTGGTCCTCTTTGCTCGTAACCTGTTTATATTCTGTCTGCGTCTCCGTGCAGATCTTAATTTG
TCAGTGTCATATATAGTCATAAATTTGCACACGGTGTTCGTTTTGATGTGCTTTTCTATATTATTTTTGAACTGGGAAAT
GCACCAGAGGCGCCATCCTTATTCAACTCAACAGTTGACAGGGCATGTCTCGTGAGAATGAGTTGAACTGAAACAACTAA
AAACAGGTTCTGTTGATCTAGTAGAGTATTTAATCAAAAACTACCACAATTCAGGAAACCGTGCCTACAAAGTACCATTT
TATGATTTTGTCCCGAAAACTACCATTTTTTTACTAATCTGTGACTAAAAACTACCATATGTGTAAATCAACCGATTCAT
CCATTTTAAACGCGTTTATGATAGACCTGGCCCGCATGTATTTTTTTTAATGTAAGGCACCTTATCGGGGGGTTCTGAGC
TGCTTGGCAGCGTAATAGTACAAAGCCTTGTAATGCTCCGGCCACG
>chr3A_699
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----------------------------------------------------------TGTCCAATGCCGCTTGTCTTTC
GTCCCACTATGCAGACCGGGCGCGCAAAATTCCG--AAACTTGGAACCCGGCGTGCCAGGTCACCGATCCGCACCCCAGT
CCACACCACCGATCCGCGGCATCGTCGGGAAAAGCAGTCTCAGCCACCCATCTCGTCTCCATCGAACGGCTCCAGCCGCC
TCGACAGCCCCCGCTCACCCTTT-ATACACACAACCCCTTCCCCCGTCTCATCTCACTCATCGCTCCCAGCCACCAAGCC
CCGCTCCAAAATCCCCAAATCCCCTCTCTTCC-CAAGCTACT---------CAGCCATGTCGGGGCGCGGCAAGGGCGGC
AAGGGGCTCGGCAAGGGCGGCGCGAAGCGCCACCGCAAGGTCCTGCGCGACAACATCCAGGGCATCACCAAGCCGGCGAT
CCGGAGGCTGGCCCGGAGGGGCGGCGTGAAGCGCATCTCGGGGCTCATCTACGAGGAGACCCGCGGCGTGCTCAAGATCT
TCCTCGAGAACGTCATCCGCGACGCCGTCACCTACACCGAGCACGCCCGCCGCAAGACCGTCACCGCCATGGACGTCGTC
TACGCGCTCAAGCGCCAGGGCCGCACCCTCTACGGCTTCGGCGGCTGAAGAGCCGCGGCGCTGGCTGGCCGGCCGTGGCG
CACAAAACCTGGCTCGCGGTCAAGAAGGTGGAGGAGTGGAGAAAACTGTACTTGATTTGGGTTCCATGCCTTCTATGATT
AGTA---GTGATATATCTGTAGTGGCAGTAGCTGGTTGTTCGATGGTTGCTTCAGTGTTCTGAATTTCTGATGGACAAAC
ACTGTGTTTGCCGAGTTATATGAATCCAGAGTTAAC-AAAATTGTCCTAGAACTATGAATTATTGCTA-TGACGATACTG
TTCGGTTTTAGTTTTAGTGTTTTACAACTCATTGTGCTCCTGCATTTAGC-----------C-----------CTGTGAT
ACGATTGTTTTCCGGCCGCTCTGCAT---TTTCTGTTCTTCAACTGCGTTTGGTGTTGATTCGATGGCGGTCTCCTACAG
ATCCAGCGGCTTATTGCCTGAATATTTTCTGCAAATCTTGCCGTGTCAAAATGTTACGAATCAACCGAGTACTAGTTTTG
AACGCACCATTAGCCAATTGGTCCTCTTCGCTCGTAACCTGTTTATATTCTGTCTGCGTCTCCGTGCAGATCTTAATTTT
TCAATGTCATATATAATCATAAATTTGCACATGGTGTTTGTTTTGATATGCTTTTCTAT---------------------
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>chr3B_699
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----------------------------------------------------------TGTCCAATCCCGCTTCTTTTTC
GTCCCACTACGCAGACCGGGCGCGCAAAATTCCG--AAACTTGGAAACCGGGGTGCCAGGTCACCGATCCGCACCCCAGT
CCACACCACCGATCCGCGGCATCATCGGGAAAAGCAGTCTCAGCCACCCATCTCATCTCCATCGAACGGCTCCAGCCTCC
TCGACAGCCCCCGCTCACCCTTT-ATAT--ACAACCCCTTCCCCCGTCTCATCTCACTCATCGCTTCCAGCCACCAAACC
CCGCTCCAAAATCCCCAAATCCCCTCTCTTCCTAAAGCTACTCGGAGC-GGCAGCCATGTCGGGGCGTGGCAAGGGCGGC
AAGGGGCTCGGCAAGGGAGGCGCGAAGCGCCACCGCAAGGTCCTCCGCGACAACATCCAGGGCATCACCAAGCCGGCGAT
CCGGAGGCTTGCCCGGAGGGGCGGCGTGAAGCGCATCTCGGGGCTCATCTACGAGGAGACCCGCGGCGTGCTCAAGATCT
TCCTCGAGAACGTCATCCGCGACGCCGTCACCTACACCGAGCACGCCCGCCGCAAGACCGTCACCGCCATGGACGTCGTC
TACGCGCTCAAGCGCCAGGGCCGCACCCTGTACGGCTTCGGCGGCTGAAGAGTCGCGGCGCTGTCTGGCCGGCCGTGGCG
CACAAGCCCTGGCTCGCGGTCAAGAAAGTGGAGGAGAGGAGAAAGCTGTAGTTGATTTGGGTTCCATGCCTTCTATGATT
AGTA---GTA--ATATCTGTAGTAGCAGTAGCTGGTTGTTCAATGGTTGCTTCAGTGTTCTGAATTTCTGATGGGCAAAC
ACTGTGTTTGCCGAGTAATATGAATCCAGAGTTATCAAAAATTGTCCTAAAACTATGAATTATTGTTAATGACGATGCTG
TTC--------------TGTGTTTGCCAAA--TGTGCTTCTGCATTTAGCCTGGTGCAAATT-----------CTGCGAT
ACAATTGTTTTCCGGCCGTTCTGTAT---TTTCT-----------------------------------------TGCAG
ATCCAGCAGCTCATTGCTTGAATATTTTCTGCAAATCTTGCCGTGTCCACATGTTACAATCTACGGAG----TAGTTTTG
AATGCACCATGAGCTGATTGGTTCTCATCGCCCGTAACCTGTTTATATTCTGTCTGTGTCTCCGTGCAGATCTTAATTTG
TCTGTGTCATATATGGTTATAAATTTGCACATGGTGTTTGTTTTGATTTTCTTTTCTGTAGTAAATTTTG----------
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>chr3D_703
CAATCCCCGTTTAC------------------------------------------------------------------
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---------------------------------------------------------------------------TTTTC
GGCCCACGATGCAAACCGGGGGCGCAAAAATCGCAAAATTTGGGATCCG---CTGCCACGTCACCGATCCGCATCCAGTC
CACGGCA--CGATCCGCGGCATCTCCGGCAAAAGCTGCCTCAGCCGTCCATTTCCTCTCCATCGGACGGCTCCAGCCGCC
TCCACAACCTCCCCTCACCC-TT-ATAT--ACTACCCCTTCCCCCGTCTCACCTCACCCATCTCTTCCACCCACCAATCC
CCGCTCAAAAACCCCCAAATCCCCTTTTCT-CTCAAGCTACTCGGAGCAGGCAGCCATGTCGGGGCGGGGCAAGGGCGGC
AAGGGGCTCGGCAAGGGCGGCGCGAAGCGCCACCGCAAGGTCCTGCGCGACAACATCCAGGGCATCACCAAGCCGGCGAT
CCGGAGGCTGGCCCGGAGGGGCGGCGTGAAGCGCATCTCGGGGCTCATCTACGAGGAGACCCGCGGCGTGCTCAAGATCT
TCCTCGAGAACGTCATCCGCGACGCCGTCACCTACACCGAGCACGCCCGCCGCAAGACCGTCACCGCCATGGACGTCGTC
TACGCGCTCAAGCGCCAGGGCCGCACCCTGTACGGCTTCGGCGGCTGAAGAGCCGCGGCGCTGGCTGGCCC----TGGCG
CACCAGCCATGGCTCGCGGTCAAGAAAGTGGAGAAGAGGAGAAATCTGTAGTTGATCTGGGTTCTGTGCCTTCTATGCTT
AGTA---GTAGTATCCTATGCTTAGTAGT-----------------TTGCTTCCGTGTTCTGAAC--CTGATGGGCAAAT
ACTGTGTTTGCCGAGTTATATGGTTCGAGAGTTAAC-AAAACTGTTCTCCAGTTATGAATTA-TGCTAATGACGATGCTG
TTC--------------TGCTTTATGACTCTTTGTGGTGCCGCATTTAGC-----------CTGTTGCGAATCTGGTGAT
GCAATTGTTTTCTTGCTGTCCTGTATGTATTTCTTTTCTTCCGCTGTGTTGGCTGTGGATCCG-CGGCTGTCTTCTGCAG
ATCCCGCAACTAATTGAATGATTATTTGCTGCAAACCTTGCTGTGTC---------------------------------
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>chr3A_704
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---------------------------------------------------------------AATCCCGCTTCATTTTC
ATCCCACTATGCAAACTGGGCGCCCAAAAATA-TAAAAAATCG--CCCCCCCCTGCCACGTCACCGATCCGCGCCCTGTC
CACGGCA--CGATCCGCGGCATCTTCGGGAAAAGCAGCCGCAGCCGTTCATCTCCTCTCCATCGAACGGCTCCAGCCGCC
TCCAGAACCCCCGCTCACCC-TTTATATACC--ACCCCTTCCCCCTTCTCATCTCACTCACCGCCTCCACCCA-------
-----CCAAAATCCCCAAATCCCCTCTCTTCC-CAAGCTACTCGGAGCAGGCAGCCATGTCGGGGCGCGGCAAGGGCGGC
AAGGGGCTCGGCAAGGGCGGCGCGAAGCGCCACCGCAAGGTCCTGCGCGACAACATCCAGGGCATCACCAAGCCGGCGAT
CCGGAGGCTGGCCCGGAGGGGCGGCGTGAAGCGCATCTCGGGGCTCATCTACGAGGAGACCCGCGGCGTGCTCAAGATCT
TCCTCGAGAACGTCATCCGCGACGCCGTCACCTACACCGAGCACGCCCGCCGCAAGACCGTCACCGCCATGGACGTCGTC
TACGCGCTCAAGCGCCAGGGCCGCACCCTGTACGGCTTCGGCGGCTGAAGAGCCGCGGCGCTGGCTGGCCC----TGGCG
CACAAGCCCTGGCTCGCGGTCAAGAAATCGAAGGAGGAGAGAAAGCTGTAGTTGATTTGGGTTCTGTGCCTTCCATGCTT
AGTACTAGTAGTATCCTATGCTTAGTAGT-----------------TTGCTTCCGTGTTCTGAAC--CTGATGGGCAAAT
ACTGTGTTCGCCGAGTTATATGATTCAGTTAACG-----AATTGTTCTCTAGTTATGAATTA-TGCTAATGACGATGCTA
TTC--------------TGTTTTACAACTCTTTGTGCTACCGCATTTAGCT-----------TGTTGCAAATCCTGTGAT
GCAATTGTTTTCTGTCCGTCTTGTAT---TT-CTTTTCTGCAGCTGT-TTGTCTGTTGATTCG-TGGCTGTCTTCTGCAG
ATCCCGCAACTAATTGTGTGAATATTTTCTGCAAACCTT-----------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------------
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-----------------------S--------------------------------------------------------
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----------------------------------------------------S---------------------------
--------------------S--------------S------------S-------------S-----------------
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---------------S-------------------------------------S---S----------------------
-----------------------------------------------------S--------------------------
----------------S-------------S-------------------S-----SS----------------------
-----------------------------------------------S----------------S---------------
-----S----------------------S---------------------------------------------------
-------------------------------S------S--------S------------S--SS---SSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_120
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--------------------TCTCCCTTTGCGTGTCCTTC----------------------------------------
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>reverse_1991
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----------------------------------------------------------------------ACTGGGAAAT
GCACCAGAGG----------------------------------------------------------------------
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