>input_sequence_84194
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---------------------------------------------------------------------------ATGGC
TGGTGCGGCGAAGGCGTCATGGATGGTGGCCATGAGCGTGGGCGCGGTGGAGGCGCTCAAAGACCAGGCCGGGCTCTGCC
GCTGGAACTATGCTCTGCGATCCATCCACCGGGCAGCCAACATCCG------------CGCCGGCGTCTCGCAGGGCAAG
AAGCAGCTTCCGGCCTCGGCGGCGGCCGTGGCAGAGAGGCGGCGAGCGGAGAAGGCCGAGGAGGGGCTGAGGACGGTGAT
GTGCCTCAGCTGCTGGGGGG------------------------------------------------------------
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-----------------------------TGCAGAATACATGTTGTGCTATGAATTGGTTGCAAGTGCAAGTGCTTC---
------------CTGTGGGGTGA---------------------------------------------------------
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>chr2D_1_TraesCS2D01G487000
AAGGCAATTCATAAAAAGAATCGATGGTTCGAGTGATTTATCTTTGAAGAAACTCTATAGCTTATTCACATATGTGGTAA
GTCTAAGAAGTACTATCAAGAAAGTGAAAGTTAAATAATCTTTGTGTTCTTGACGTATGCTTTTATTTCTTTCTTTTGCA
GAGAATTGACATATGTTAACTACCAAAAATGCTAAATGGAGCTTGAGCTCCATGGAGCCCTTGAATAAATTCAAAAATCA
TACTTTTATGTTTCCAAAAATTCGGTGAAAAAATACACATATACCCAGAGATGTAAT-GTACATTTGTGTAAAATTTCAT
GATGAACTAGAATTAAATGAGAGCTACAAAAAGAAAAACAAGCTTGTAGCCTTTTAGCGCATGTACCATTTGCTCTAAAA
GTCCATGATTTTGTTTTTGTGCAGCCTGAAATTCAAGGTATTTCATCGTGAAATTT---TTGAGCTCTATTTTCTGTGTG
AAATTTTATACATATATACATTACATCCTTATATACGCGTATACG--TTTTTTCATAAAATTATAAAATCGGAACTAAAA
AAAAACAATAACAGGCTTCATGGAGACGCCTTGCTCGCGTTTCTCACTG----------CTATGTCATCACTGCCGCGTG
CCAACTCAGTCAGGTCGCAACGGACAAAAACCGCCCCTTCTGCCGCGAATAAACAAGACGAGCTGAGGTGGGCAGGATAG
CAACTGTATCGGGACGAAAGCGAGAAGCAGAAGT--------------GAATCTGAAAGCACCCGGTATCCTGGAAAACC
AACACCCGCAGCCGCCTGGTTTGCTCCGGCTCTCCCAGCCTCCCTCCCGTATATAA-CCTCGTCCCACTCCCACACTCCT
CTCATCATCACAAGCAAAGCACCAGGAAGAAGCAGCCCTGCATCAGCTCAGCTCTTTTATCACTGAAAGTCCACTACTAG
ACACAAGCAATCA----CAAATCAGTCTCAGTTCAACCATTTTCCACCAGCCCAGCAAGCAGAAGGAGAGCAGTGATGGC
TGGTGCGGCGAAGGCGTCATGGATGGTGGCCATGAGCGTGGGCGCGGTGGAGGCGCTCAAAGACCAGGCCGGGCTCTGCC
GCTGGAACTATGCTCTGCGATCCATCCACCGGGCAGCCAACATCCG------------CGCCGGCGTCTCGCAGGGCAAG
AAGCAGCTTCCGGCCTCGGCGGCGGCCGTGGCAGAGAGGCGGCGAGCGGAGAAGGCCGAGGAGGGGCTGAGGACGGTGAT
GTGCCTCAGCTGCTGGGGGG------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------TGCAGAATACATGTTGTGCTATGAATTGGTTGCAAGTGCAAGTGCTTC---
------------CTGTGGGGTGAGATCGTTCGTGAAGGTTCTGTCTGAATTTCTTCGCTCTACAATTTGCTGAACCGACA
CG--------CTCAACTGAACGTGATTCAGGTCCAGGTTATACCACATTACTGAGTTAAC--------------------
------------------TAAACGTGAGCTAGTTGGATCCAGGTCCAGGCCAGAGTGAGATACGTCGCAGTTCCTTTTCC
AGTTTTCACTAAACGGCCAGCAGAATCGTTACTGCATAACTTGGATCATGACCTAGTTGCTTATCATTCTGACCATAAGA
GTTAAGAGATATCCCTACACTTCAGACTTCCAACGACACACGAGAGTTCGCCTGAAATAATCAAGGAGATCGATCGGTGG
ACTAGAAAAATCAGAGTCACATCATGCAAAACTCAGGCGGCTGAGATAGAACACCCGGTTGAGATCCCATCTGCCCCCGC
GCCGCTCCCTCCCCGGGGCGACACGGGCGGCGAA--CGCCCCCAGCCTCTCCTCGCCCCACCCATCCCATTCACCCCCTC
GCCGTCGCCGATGGCCTCCGGCAGGCAAAGCCTGCGCGGAGCCGGCGGCGGCGGGGCTCGTGCTCCTCGTCGGCTGCTGT
TTTGATGGGGAGATCTCAGGCGGTTGGTGACTGTCCGGAGCTCGTCTTCACGGCGGCGTCCTCGATCCTGGCAGCGGTGG
TCGCTGGCGCGCAGCGCGGTGTCGCCACGATGGGAGCTCCATCGTGGGCGTGCGGTCGCGGTCTTGGCCGCCCGTGCGGG
CCCGATCTGGGTCCTCGCGGGCCGCGGCTGGCGCGGATGGTGGGGGCGAGATTCGGGCTCGGCCGGCGTGCCGTTCGCCG
GATCTGGTATGGCGCGGTGCTGCGGCTCAGCACGCGGGCTGGTGGTGGCACCGGCTATAGGTATCGTGGTGGTGCCATGG
CCGGTCAGGCAGTGGCGGCGGCCGCGGTGGTGGACGATCCGTGCACAAGACGATTGATGGAGGCCATTGGAACAGATCTG
GGTGAAGACCTGCTCGCGGCTGGTGCCGAGG
>chr2B_4
---GCAATTCATAAAAAGAGTCCAT---TCGAGTGATTTATCTTTAAAGAAACTCTATAGCTTATTCAC-TATGTGGTAA
AGTCTACATAAGAAAGG--------GAAAGTTAAATAATCTTTGTGTTTTTGACGTATGCTTTTT----TTTCTATTGCA
GAGAATTGACATATGTTAACTATCAAAAATGCTAAATGGAGCTTGAGCTCCATGGAGCCCTTGAATAAATTAAAAGATCA
TACTTTTATGTTTCCAAAAAATCTG-GAAAAAATACACATATACCCAGAGATGTAAACGTACACTTGTGTAAAGTTTCAT
GATGAACTACGGTTAAATGAG-------------------AGCTTGTAGCTTTTTAGCGCATGTACTGTTTCCTCTAAAA
GTCCATGATTTTGTTTTTGTGCAGCTTGAAATTGAAGGTATTTCATTGTGAAAAACAAATTGGGCTCTATTTTCATTGTG
AGGTTTTACACATACATACATTACATCCTTATATATGTGTACATGTTTTTTTTCATAAAATTGTAAAATCGCAATAAAAA
ATAAAAAATAACAGGCTTCATGGAGACGCCTTGCTCGCGTTTCTGTTTTCTCACTGCTACTATGTCATCACTGCCGCGTG
CCGACTCAGTCAGGTCGGAACGGACAAAAACCGCCCCTTCTGCCGCGGATAAACAAGACGAGCTGAGGTGGGCAGGATAG
CAACTGTACCGGGACGAAAGCATGGTGTGGAGTAAACAAGCAGAAACCGAATCTGAAAGCACCCGGTATCCTGGAAAACA
ACCACCCGCAGCCGCCTGTTTTGCTCCGGCTCTCTCTGCCTCCCTCCCGTATATAAACCTCGCCCCACTCTCACCCTCCT
CTCATCAGCACAAGCAAAGCACCAGGAAGAACCATCCCCCCATCAGTTCAGTTGTTTCACCACTGAAAGTCCAGTACTAC
ACACAAGCAATCAATCACAAATCAGCCTCAGTTCGACCACTTTCCACCAGACCAGCAAGAGGCGATGGCC----------
-GGTGCAGCGAAGGCGTCTTGGATGGTGGCCATGAGCGTGGGCGCGGTGGAGGCGCTCAAGGACCAGGCGGGACTCTGCC
GGTGGAACTACGCTCTGCGGTCCATCCACCGGGCAGCCAAGGCCAAATCCAACATCCACGCCGGCGTCTCGCAGGGCAAG
AAGCAGCTTCCGGCCTCGGCGGCGGCCGTGCCGGAGAGGCGGCGAGCGGAGAAGGCCGAGGAGGGGCTGAGGACGGTAAT
GTACCTCAGCTGCTGGGGACCAAACTAGTAGTACTAGCTAGCTGCTAGCGGTGTGTTTGTTGCAGCAAGCAACCATGGCC
TGGGATCTGGCTGGTTGCATCTGATTTGTACATACGTGTCCCCAGGATGATGATGAAAATTTCAAGTTTATACCAGCCTC
CTTCTCCATGATTCTGCGATTTATTTTGATGCAGAATGCATATTGTGCTATGAATTGGTTGCAAGTGCTTCCTGTGGCTG
GGAGTCGACCTGCTGTGGGGTGAGATCGCTCGTGGAGGTTCTGTCTGAATTTCTTCGCTCTCCAAATTGCTGAACCGACA
CGACAGCTAACTCAACTAAACGTGATCCAGATCCAGGGTATACCACATTATTAAGTTAAGTATAAACGTGAGCAAGTTGA
ACCCGCAAAAAAAAAGTATAAACGTGAGCAAGTTGGATCCAGGTACTGGCCAGAGTGAGACACGTCACAGTTCCCTTTCC
AGTTTTCACTAAACGGCCAGCAGAATCGTTACTGCATAACTTGGATCATGGCCTAGTAAGCAC-CATTCTGACCA-----
--TAAGAGATATCCCTACACTTCAGAGTTC--------------------------------------------------
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>chr7A_1709
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-----------------------------------------------------------------CCCATCTGCCCCCGC
GCTGCTCCCTCCCCGGTGTGACACGGGCGGCGAA--C-CCCCCAGCCTCTCCTCGCCCCACCCATCCCATTCACCCC-TC
GCCATCGCCGGTGGCCTCCGGCAGGCAAACCCTGCGTGGAGCCGGCAGCGGCGGGGCTCGTGCTCCTCGTCGGCTGCTTT
TTCGATGGGGAGATCTCAGACGGCTGGTGACTGTCAGGAGCTTGTCTTCACGCGGGCGTCCTCGATCGTGGCAACGGTGG
TCGCTGGCGCGCAGCGCGGTGTCACCATGATGGGAGCTCCGTCGTGGGCGTGCGGTCGCGGTCTTGGCCACCCGTGCTGG
CCCGATCTGGGTCCTCGCGGGCCGTGGCTGGCGCAGATGGTGGGGGCAAGATTCGGGCTCGGACGGCGTGCCGTTCACCG
GATCTGGTATGGCGCGGTGTTGCGGCTCAGCACGCGGGCTGGTGGTGGCACCGGTTGTAGGTATCGTGGTGGTGCCATGG
CCGGTCAGGCAGTGGCAGCGGCCGCGATGATGGACGATCGATGCACAAGACGCTTGATGAAGGCCATTGGAACAGATTTG
GGTGAAGACCTGCTCGCGGCTGCTGCCGAGG
>chr1B_1709
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-----------------------------------------------------------------CCCATCTGCCCCCAC
GCCGCTCCCTCCCCGGGGCGACACGGGCGGCGAA--C--CCCCAGCCTCTCCTTGCCCCACCCATCCCATCCACCCCCTC
ACCATTGCCGGTAGCCTCCAGCAGGCAAAGCCTACGAGGAGCCGGCGGCGGCGGGGCTCGTGCTCCTCATCGGCTGCTCT
TTTGATGGGGAGATCTCAGGCGGCTTGTGACTGTCCGGAGCTCGTCGTGACGGCGGCGTCCTCGATCGTGGTAGCGGTGG
TCACTGGCACATGGTGCGGTGTCGCCACGATGGGAGCTCCGTCGCAGGCGTGCGATTGCGGTCTTGGCTGCCTGTGCGGG
TCCAGTCTGGATCCTCGCGGGCCACGGTTGGCGCAGTTGGTGGGGGCGAGATTCGAGCTCGGCCGGCGTGCCGTTCGCTG
GATCTGGTATGGCGCGGTGTTGCAGCTTAGCACGCGGGCTGGTGGTGGCACCGGCTGTAGGTATCGTGGTGGTGCCATGG
CCGGTCAGGCAGCGGCGGC-------------------------------------------------------------
-------------------------------
>chr1A_1710
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------------------------------------------------------------------CCATCTGCCCCCGC
GCCGCTCCCTCCCCGGGGCGACACAGCCGGCGAA--CCCGCCCAGCCTCTCCTCGCCCCACCCATCCCATTCACCCCCTC
GCCGTCGCCGGTGGCCTCCGGCAGGCAAAGCTTGCGCGGAGCCGACGGCGGCAGGGCTCGTGCTCCTCGTCGGTTGCTGT
TTTGATGGGGAGATCTCAGGCAGCTGGTGACTGTCCCGAGCTCGTCTTCACGGCGGCGTACTCGATCGTGGCAGCGGTGG
TCGCTGGCGCGCAGCACGGTGTCGCCATGATGGGAGCTCCGTCGTGGGCGTGCGGTCGCGGTCTTGGCCGCCCGTGCGGG
CCCAATATGGGTCCTCACGGGCCGCGGCTGGCGCAGATGGTGGGGGCAAGATTCGGGCTCGGCCGGCGTGCCGTTCGCCG
GATCTGGTATGGCGCGGTGCTGCGGCTCAGCACGCGGGCTGGTGGTGGCACCGGCTGTAGGTATCGTGGTGGTGCCATGG
CCGGTCAGGCAGCGGCGGCGGCCGCGATGGTGGACGATTCGTGCACAAGACGCTTGATGGAGGCCATTGGAACAGATCTG
GGTGAAGAGCTGCTCATGGCTGCTGCCGAGG
>chr1A_1710
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------------------------------------------------------------------CCATCTGTCCCCGC
GCCGCTCCCTCCCCGGGGCGACACAGGCGGCGAA--CCCTCCCAGCCTCTCCTCGCCCCACCCATCCCATTCACCCCCTC
GCCGTCGCCGGTGGCCTCCGGCAGGCAAAGCTTGCGCGGAGCCGGCGGCGGCAGGGCTCGTGCTCCTCGTCGGTTGCTGT
TTTGATGGGGAGATCTCAGGCAGCTGGTGACTGTCCGGAGCTCGTCTTCACGGCGGCGTACTCGATCGTGGCAGCGGTGG
TCGCTGGCGTGCAGCGCGGTGTCGCCATGATGGGAGCTCCGTCGTGGGCGTGCGGTCGCGGTCTTGGCCGCCCATGCGGG
CCCAATATGGGTCCTCGCGGGCCGCGGCCTGTGCAGATGGTGGGGGCAAGATTCGGGCTCGGCCGGCGTGCCGTTCGCCG
GATCTGGTATGGCGCGGTGCTGCGGCTCAGCACGCGGGCTGGTGGTGGCACCGGCTGTAGGTATCGTGGTGGTGCCATGG
CCGGTCAGGCAGCGGCGGCGGCCGCGATGGTGGACGATTCGTGCACAAGACGCTTGATGGAGGCCATTGGAACAGATCTG
GGTGAAGAGCTACTCATGGCTGCTGCCGAGG
>chr5B_1714
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----------------------------------------------------------------------CTGCCCCCGC
GCCGCTCCCTCCCCGGGGCGACACGGGCGGCAAA--C--CCCCAGCCTCTCCTCACCCCACCCAACCCATCCACCCCCTC
GCTGTCGCCGGTGGCCTCCAGCAGGCAAAGCCTG-GTGGAGCCGGCAGCGGTGGGGCTTGTGCTCCTCGTCGGCTGCTCT
TTTGATGGGGAGATCTCGGGGGCCTGGTGACAGTCCGCAGCTCGTCTTCACGGCGGCGTCCTCGATCGTGGCAGCGGTGG
TCGTTGGCGCGCGGCACAGTGTTGCCACGATGGGAGCTCCGTCGCGGGCGCGCGGTCGTGGTCTTCGCCGCCCGTGCGGG
CCCGATATGGGTCCTCGCGGGCCGCGGCCGGCGCGGGTGGTGGGGGTGAGATTCGGGCTCGGCCGGCGTGCCATTCGCCC
GATCTGGTATGGCGCGGTGCTGCGGCGCAGCACGCGTGCTGGTGGTGGCACCGACCGTAGGTATCGTGGTGGTGCCATGG
CCGGACAGGCAGCGGC----------------------------------------------------------------
-------------------------------
>chr3D_1715
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-----------------------------------------------------------------------TGCCCCCGC
GCCACTCCCTCCCCGGGGCGACACGGGCGGCGAAGCC--CCCTAGCCTCTCCTCATCCCACTCATCCCATCCACCCGCTC
GCCGCCGCCGGTGGCCTCCGGCAGGCAAAGCCTGCGCGGAGCCGGTGGCGGCGGGGCTCGTGCTCCTTGCCGGCTGCTCT
TTTGATGGGGACATCTCGAGCGGCTGGTGACTGTCCAGAGTTTGTCTTCACGGCGGCGTCCTCGATTGTGGCAGCGGTGG
TCGTTGGCGTGCGGCGCGGTGTCGCCACGATGGGAGCTCCGTCGTGGGCGTGTGGTCGTGATCTTGGCCGCTCGTGCGGG
CCCGATCTGGGTCCTCGGGG-CCGCGGCCGGCGCAGGTGGTGGGGGTGAGATTTGGGCTCGGACGCCGTGTCGTTCGCCG
GATCTGGTATGGCGCGGTGCTGCGCCTCAGCACACGTGCTAGTGGTGGCACCGGCTGTAGGTATCGTGGTGGTGCCATGG
CCGGTCAGGCAGCGGCGG--------------------------------------------------------------
-------------------------------
>chr5D_1743
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-------------------GACACGGGCGGCGAA--CCCCCCCAGCCTCTCCTCGCCCCACCCATCCAATTCACCCCCTC
GCCGTCGCCGGTGGCCTCCGGCAGGCAAAGCCTGCGTAGAGCCGGCGGTGGCGGGGCTCGTGCTCCTCGTCGGCTGCTGT
TTTGATGGGGAGATCTCAGGCGGCTGGTGACTATCTGGAGCTCGTCTTCATGGCGGTGTCCTCGATCGTGGCAGCGGTGG
TCGCTGGCGCGCAGCGCGGTGTCGCCAAGATGGGAGCTCCGTCGTGGGCGTGCGGTCGCAGTCTTGGCCGCCCGTGCGGG
CCCGATCTGGGTCCTCGCGGGCTGCGGCTGGCGCAGATGGTAGGGGCGAGATTCAGGCTCGGCCGGCGTGCCGTTCGCCG
GATCTGGTATGGCGTGGTGCTGCGGCTCAGCACGCGGGCTGGTGGTGGCACCGGCTGTAGGTATCGTGGTGGTGTCATGG
CCGGTCAGGCAGCGGCAGCGGCCGCGATGGTGGACGATCCGTGCACAAGACGCTTGATGGAGGCCATTGGAACAGATCTG
GGTGAAGACCTGCTTGCGGCTGCTGCCGAGG
>chr1A_1772
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--------------------------------------------------CCTCGCCCCACCCATCCCATTCACCCCGTC
GCCGTCGCCAGTGGCCTCCGGCAGGCAAAGCCTGCGCGGAGCCGGCGGCGGCGGGGCTCGTGCTCCTCGTCGGCTGCTGT
TTTGATGGGAAGATCTCAGGCGGCTGGTGACTGTCCGGAGCTCGTCTTCACAGCGGCGTCCTCGATCGTGGCAGCGGTGG
TCGCTGGCGCGCAACGCGGTGTCACCATGATGGGAGCTTCTTCACGGGCGTGCGGTCGCGGTCATGGCCGCACGTGCGGG
CCCGATCTGGGTCCTCGCGGACCGCGGCTGGCGCGGATGGTGGGGGCGAGATTCGGGCTCGGCCGGCGTGCGGTTCGCCG
GATCTGGTATGGCGCGGTGCTGCGGCTCAGCACGCGGGCTGGTGGTGGCACCGTCTATAGGTATCATGGTGGTGCCATGG
CCGGTCAGGCAGCAGCGGCGGCCGCGATGGTGGACGATCCGTGCACAAGACGCTTGATGGAGGCCATTGGAACAGATCTG
GGTGAAGAACTGCTCACGGCTGCTGCCGAGG
>SNPs
SSS----------------S--S--SSS-----------------S-----------------------S----------
SSSSS-S-SSSSSS-SSSSSSSSSS-----------------------S---------------SSSSS-----S-----
----------------------S------------------------------------------------S---S----
--------------------S--S-S------------------------------S------S---------S------
---------SSS---------SSSSSSSSSSSSSSSSSSS----------S---------------SS---S--------
-------------------------S-------S------------S------SSS------S-----------SS----
-SS-----S-----S--------------------S-S---S-S------------------S--------S--SS----
-S---S--------------------------------------SSS-S-------------------------------
--S--------------S-----------------------------S--------------------------------
--------S------------SS-SS-SS--SSS---------------------------------------------S
-S----------------S---------------S-S-------------------------S-------S---S-----
-------S-----------------------S--S---SS------S----S-S---S-S-------------S-----S
-------------------------S--------S----S----------S--------SS-SSSSS-SSSSSSSSSSSS
S-----S-----------S-----------------------------------------S--------S--S-------
-S--------S--------S--------------------SSS-SS----------------------------------
------------------------------S-S--------------------------------------------S--
--S---------------SS------------------------------------------------------------
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-------------------------------------S---S--------------------------SSSSSS-SS---
----------------------------S-----S--------------------------S---S--------------
-----------------S--------S---S------S------------S-S------S--------------------
-----------------------------S--------------S-S-------------S-----S-------S-----
--------------------------------------------------S------SSSSSSS-----------SSSSS
SS------------------------S---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------
-------------------------------------S------------------------------------------
----------S---------------------------------------------------------------------
-----------------------S-------------------------------------------S------------
----------------------------------------S---------------------------------------
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--------------------------S-------------------------S---------------------------
----------------------S--------
>forward_1033
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-----------------------------------------------------AGCAAGCAGAAGGAGAGCAG-------
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>reverse_2184
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-----------------------TTGGTGACTGTCCGGAGCTC-------------------------------------
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-------------------------------
