>input_sequence_84181
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------ATGTCGGGGCGCGGCAAGGGCGGCAAGGGGCTGGGGAAGGGCGGCGCCAAGCGCCACCGGAAGGTGCTCCGCGA
CAACATCCAGGGCATCACCAAGCCGGCGATCCGGAGGCTGGCCAGGAGGGGCGGCGTGAAGCGCATCTCGGGGCTCATCT
ACGAGGAGACCCGCGGCGTGCTCAAGATCTTCCTCGAGAACGTCATCCGCGACGCCGTCACCTACACTGAGCACGCTCGC
CGCAAGACCGTCACCGCCATGGACGTCGTCTACGCGCTCAAGCGCCAGGGCCGCACCCTCTACGGCTTCGGCGGCTAG--
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>chr2A_1_TraesCS2A01G393600
TGTAGCACATATTAATTTACTTCGTCATCAAACTTTGCCCGTGTACAGTATATCTCCATACTACTGCATAAAATTCGTGT
TCGTATTTTAAAGACTTTCAAACATGATTTTCAAACTATTTGAAATGAAGTGCTCATGCGACCCTTGCTCTGGAGCAACG
TTTTGGCCTCCCATGTTCCAAACCGTCCTCACCGATACACTTCTCTATTCTTATAAAAAACTGAGTTGGTGATGATGGTG
TGCCCGCCATCTTATAATATAGACCGTTCGATCTATATCTGACAGATAGAAAGCAAACTATGACAATTTTGCAAAAGGAT
ATCCGCACCTCTCGTTCATCCTTATCTCCCACAACTTCATTGTTGAGTAATTAAAAAAGAAGCCTCCGGAACAATCTGGC
ATGGTGGCCGCTGCCGGCGTCGTCCATCTCCATGCCTCTGCTAAGTCCGACCACCAATCACCACCGCGCCCCACTCCTCA
CCTTATCTCTCATCTTTCTCGAGATATCATTTTTTCGATGAAATTCTCGAGATATCATTAGTTTTTACACATGTGATTAC
TCCTGCATGAGTCAATCACAATAGATGTTTTGTAAAAAAATGCATTTTGATGTCCTGTGCAATGCACGGGCATCTTGCTA
GTCATAAAAAAAAAAGCAGACACTTTCCAATCCACCGCGCTCCTCTGGTCTCCGCGGTCTCCAATTTCAAATCCATCCCC
GTA--------TCCGCCGCCACGTCATCGATCCGCGCCACCAGCCTCGCACCCGCACCTCCATCCCACCCTTCATT--TC
AATCCAACGTCCCACCCCCGCCGTCCCACGGATCGATCCCAGCGAG----CGCCTCCCGCGGTCCCGCCCCAAAGC-CAC
GAAAATCCCGCGCTTTC------CCCCCAAATCCTCCCGATATAAACCCGCCACCACC----------CCCCAATCCCAG
CACAAGCTTCTTCCCA--------------AGCACTTCCTCTTCTTTCTAAGCGCACACATCCC-TCGGAGCTAGGTGGA
TCGGCGATGTCGGGGCGCGGCAAGGGCGGCAAGGGGCTGGGGAAGGGCGGCGCCAAGCGCCACCGGAAGGTGCTCCGCGA
CAACATCCAGGGCATCACCAAGCCGGCGATCCGGAGGCTGGCCAGGAGGGGCGGCGTGAAGCGCATCTCGGGGCTCATCT
ACGAGGAGACCCGCGGCGTGCTCAAGATCTTCCTCGAGAACGTCATCCGCGACGCCGTCACCTACACTGAGCACGCTCGC
CGCAAGACCGTCACCGCCATGGACGTCGTCTACGCGCTCAAGCGCCAGGGCCGCACCCTCTACGGCTTCGGCGGCTAGAT
TCGTG-------------------------------------------TCGTGTGTCCG------TGTGTTCTGTGGAAG
ACGGGTTTTACTACTGCTTTGGCGTGCGTCGTTGTGTTCCGT--CTTGTGTTCATTAGGCTGTAATTCCTTGTTGCGGTC
AATGAAACTAGTTCTGTTCTGAATCCTGACCTGAAGTGCAATTGGTTTGACTTAGATGAAATGCAATTGGATGAACGATT
TATCACTCGTTGCAATCTGTACAGATGCAGAAGTATTGTTGGAGTGGTAAAATGTGAATCAAGACGCCAGATGCATATTC
CTGAAATACTGACCAAGTGCTTCGCTGTGTTGAATTCGGTTTTGGTTTTCTAAGGTTGGTTGGTTTGA--TATTAGATTT
CTCATTTTAGATCGTGTATAGCTGAAGTGCAGTTGATTTGTCTTAGCTGAACTGCAGTTGATTGAACGATTTACCACTCG
TTGCAACCTGTAGAAGGGGCGCATCCTTTTGATTTGGTTTGGTTTCACTGGGGAACGAATCTTGTTTT-TTTTTTCTGTG
CAGATCTACAGATGCACAGGTGTGGTTGTT-GGAGTG------GTACGAACCCTCCATTAAAATGTGAAATCA-------
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-----------------------AGATGCAAGATACCTATTCCTTAAATCTTCACCAAGTGCTTCGATGTGTTGGATCCG
GTTTTGATTTTTGTAAGTCTGGTTAATTTGTTTTAT--TATTATATTTCTTGCTTTAGATCGTATAGCTCTACTGCTG-G
ACTGTACATTTGAGTTATAATTGAAATGCAACTGAACCAATGTTTACATTGGACAGATAGCTGAACTGCAATGGATCCAG
TATTGAACGTTCGAGTTGTTGCTGAAATGCAATTGAATGAATAATTATCACTCATTGCAATCTGTAGAAGAGACGGACCC
TTCTGTTTGGTTTTGGTTTTGCTGGGGAGTGAATCTTGATTTTTTTTTTCTGCAGATCTACATACCCCAAAGTGGTCGGA
CCCTTCCCTGGACCCTGCACAAGCGGGAGCTACATGCACCAGGTTGCCCTTT
>chr2B_646
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-----AAAAAAAAAAGCAGACACATTGCAATCCACCGCGCTCCTCTAGTCCC--CGGTCTCCAATTTCAAATCC------
--A--------TCCGCCGCCACGTCATCGATCCGCGCCACCAGCCTCGCACCCGCACC-CCATCCGACCCTTCATT--TC
AATCCAACGTCCCACACCCACCGTCCCACGGATCGACCCGGC-AAG----CGCC--------TCCCGCCCCAAACC-CAC
CAAAATCCCGCGCTTCC------CTCCCAAATCCTCTCGATATAAACCCGCCT-CAGC----------CCCCAATCCCAA
CACAAGCTTC-------------A----GCAGCACTTCCTCTTCTTCCCAATCTCGCACACCTC-TCGGAGCTAGGCGGA
GCGGCGATGTCGGGGCGCGGCAAGGGCGGCAAGGGGCTGGGCAAGGGCGGCGCCAAGCGCCACCGGAAGGTGCTCCGCGA
CAACATCCAGGGCATCACCAAGCCGGCGATCCGGAGGCTGGCCAGGAGGGGCGGCGTGAAGCGCATCTCCGGCCTCATCT
ACGAGGAGACACGCGGCGTGCTCAAGATCTTCCTCGAGAACGTCATCCGCGACGCCGTCACCTACACAGAGCACGCCCGC
CGCAAGACCGTCACCGCCATGGACGTCGTCTACGCGCTCAAGCGCCAGGGCCGCACCCTCTACGGCTTCGGAGGCTAGAT
CCGTGGGTTCCGCGGGTGGCGGTAGCG--GTAGTTGGGACTGTGTCTGTCGTGTGTCCTCTGTGATGTGTGCTGTGGGAG
ATGGGATTTGCTACCGCTTTGGCGTGCGTCGTTGTGTTCCGTGTCTTGTGTTCA-TAGGCTGTAATACCTTGTTGCGGTC
AATGAAACTAGTTCTGTTCTGAATCCTT----------------------------------------------------
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-----------ACCAAGTGCTTCGCTGTGTTGAATTCAGTTTTGGCTTTCTAACTTTGGTTGATCTGTTCTATTATACTT
CTCGTTTTAGATAGTGTGTAGCTGAAGTGCAATTGATTTGACTTAGTTGAAACGCAATTGAATGAACGATTTACCACTCG
TTGCAATGTGTAGAAGAGATGCATTCTTTTGATTTGGTTTGGTTTCACTGGGGAACGAATCTTGATATATTTTTTCTGTG
CAGATCTACAGATGCAGAGATGTTATTGTTGGAGTGGTATGAAGTATGAACACTCCATAAAAATGTGAA-TCA-------
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-----------------------AGACGGCAGATACCTATTCCTGAAATCCTGATCAAGTAGCTGC----GTTGAATCTG
GTTTTGATTTTTATAAGTCTGGTTAATTTGTTCTACTGTATTATATTTCTAGCTTTAGTTGGTATAGCTTTACTGCTGCA
ACTTTACATTTGAGTTATAATTGAAATGGAACTGAACCAATGTTTACATTGGACAGGTAGCTGAACTGCAATGGGTCCGG
TATTGAACATTCGAGTTGTTGCTGAAATGCAATTGAATGAATGATTATCCCTCGTTGCAATCTGTAGAAGAGATGGACCT
TTCTGTTTGGTTTTGGTTTTACTGGGGAGTGATTCTTGAA--TTTTTTCTTGCAGATCTACATA----------------
----------------------------------------------------
>chr2D_649
AAAAAAA-------------------------------------------------------------------------
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----------------CAGAAACATTGCAATCCACCGCGCTCCTCTAGTCCC--CGGTCTCCGATTTCAAATCC------
--ATCCCCGCTTCCGCCGCCACGTCATCGATCCGCGCCACCAGCCTCGCGCCCGCACC-CCATCTGACCCTTCATTC--C
AATCCAACGTCCCACGCCCTCCGTCCCACGGATCGACCC-AGCGAG----CGCC--------TCCCGCCCCAAATC-CAC
CAAAATCCCGCGCTTCCCCCCCGCCCCCAAATCCTCCCGATATAAACCCGCCT-CCGC----------CCCAAATCCCAC
CACAAGCTTC-------------A----GCAGCACTCCCTCTTCTTCCCAATCACACAC---CTGTCGGAGCTAACCGGA
GCGGCGATGTCGGGGCGCGGCAAGGGCGGCAAAGGGCTGGGCAAGGGCGGCGCCAAGCGGCACCGGAAGGTGCTCCGCGA
CAACATCCAGGGCATCACCAAGCCGGCGATCCGGAGGCTGGCCAGGAGGGGCGGCGTGAAGCGCATCTCGGGGCTCATCT
ACGAGGAGACCCGCGGCGTGCTCAAGATCTTCCTCGAGAACGTCATCCGCGACGCCGTCACCTACACCGAGCACGCCCGC
CGCAAGACCGTCACCGCCATGGACGTCGTCTACGCGCTCAAGCGCCAGGGCCGCACCCTCTACGGCTTCGGCGGCTAGGT
TCCTGGGTTCCGTTGGTGGCAGCAGCAGTGTGGTTGCGGCTGTGTCTGTCTTGTGCCCTCTGTGATGTGTGCTGTGGGAG
ATGGGATTTACTGCTGCTTTGGCGTGCGTCGTTGTGTTCCGTGTCTTGTGTTCAGTAGGCTGTAATATCTTGTTGCGGTC
AATGAAACTAGTTCTGTTCTGAATCCTGACT-------------------------------------------------
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----------------------TGGAGTGCAATTGATTTGACTTAGCTGAAATGCAATTGAATGAACGATTTACTACTCG
TTGCAATCTGCAGAAGAGATGCATCCTTTTGATTTAGTTCGGTTTCACTGGGGAACGAATCTTGGTTT-TTCTTTCTGTG
CAGATCTACAGATGCAGAGGATTCATTGTTGGGAGTG------GTATGAATTCTCTGTAAATATGTGAAACTAAAATCCT
GACCAAGTGTTTTGCTGTGTTGAATCTGTGTTGATACAGACGCAAGATACCTATTCCTGAAATCCTGACCAAGTGTTTTG
CTGTGTTGAATCTGTGTTGATACAGACGCAAGATACCTATTCCTGAAATCCTGACCAAGTGTTTTGCTGTGTTGAATCTG
GTTTTGATTTTTCTAAGTCTGGTTAATTTGTTCTACTGTATTATATTTCTCGCTTTAGATCGTATAGCTCTACTGCTGTG
ACTGTACATTTAAGTTATAACTGAAATGCAATTGAACCAATGTTTACATTGGACAGATAGCTGAACTGCAATGGATCCAG
TATTGAACATTTGAGTTGTTGCTGAAATTCAGTTGAATGAATAATTATCACTCGTTGCAATCTGTAGAAGAGATGTACCC
TTCTGTTAGGTTTTGGTCTTACTGGGGAATGAATCTTGAA--ATTTCTTCTGCATATCTACATA----------------
----------------------------------------------------
>chr2D_723
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--A--------TCCGGCGCCACATCATGGATCCGGGCCAGCACCCTCCCACCT-------CATCCCACCCTTCTGATCTC
AATCCAACGTCGCATCTCCACCGTCTCGCGGATCGACCCAGCGAAG----TCCC--------TCCCGCCCCCAAAGTCCC
CCAAATCTTGCAGTTCC------CTCCTAAATCCTCCCCATATAAACCAACCC-CC-CGCCCTCAGATCCCTAATCCCAT
CGCAAGCATCAGACTCCCTCCAAAGCAGGCAGCAGCTCCTCTTCTTCCTAATCACACTA---TC-TCGGAGA-----GGA
GCGGCCATGTCTGGGCGCGACAAGGGCGGCAAGGGGCTGGGCAAGGGCGGCGCCAAGCGGCACCGGAAGGTCCTCCGCGA
CAACATCCAGGGCATCACCAAGCCGGCGATCCGGAGGCTGGCCAGGAGGGGCGGCGTGAAGCGCATCTCCGGCCTCATCT
ACGAGGAGACCCGCGGCGTCCTCAAGATCTTCCTCGAGAACGTCATCCGCGACGCCGTCACCTACACCGAGCACGCCCGC
CGCAAAACCGTCACCGCCATGGACGTCGTCTACGCGCTCAAGCGCCAGGGCCGCACCCTCTACGGCTTCGGAGGCTAGAT
TTGTG-------------------------------------------TGGTG---------------------------
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>chr2A_726
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-------------CGGCGCCACGTCATCAATCCCGGCCAGCACCCTCCCACCT-------CATCCCACCCTTCTGATCTC
AATCCAACGCCGCATCTCCACCGTCTCGCGGATCGACCAAGCAAAGCATCTCCC--------TCCCGCCCCC--------
--AAATCTCGCAGTTCC------CTCCAAAATCCTCCCCATATAAACCAACCC-CCGCGCCCTCAAATCCCCAATCCCAT
CGCAAGCATCAGACTCCCTCCAAA----GCAGCTCCTCTTCTTCCTCCCAATCACACTC---CC-TCGGAGA-----GGA
GCGGCCATGTCCGGGCGCGGCAAGGGCGGCAAGGGGCTGGGAAAGGGCGGCACCAAGCGCCACCGGAAGGTCCTCCGCGA
CAACATCCAGGGCATCACCAAGCCGGCGATCCGGAGGCTGGCCAGGAGGGGCGGCGTGAAGCGCATCTCCGGCCTCATCT
ACGAGGAGACCCGCGGCGTCCTCAAGATCTTCCTCGAGAACGTCATACGCGACGCCGTCACCTACACCGAGCACGCCCGC
CGCAAGACCGTCACCGCCATGGACGTCGTCTACGCGCTCAAGCGCCAGGGCCGCACCCTCTACGGCTTCGGAGGCTAGAT
GCGTG---------------------------------------------------------------------------
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>SNPs
SSS-SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSS------------------S--S-------------------S---S-SS--------------------SSSSSS
SS--------------------------------------------------------S---------------------
-------------------S----------------S--S--------------SSSSSSSS------------S-----
S--------------S------------------------------------SS--S----------------------S
----------SSS-SS------------------------------S----S-S------S---------------S---
S----------------------------------------S--------------------------------------
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-------------------------------------------------------------------S--------S---
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----------------------------------------------------------S-----------S------S--
-S---S------------------------------------------------S-----------S-------------
------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSS--------------------------S-------S-------SS-------S-S--S-------S-S--
---S--------S----S-------------S--------S----------S----S----S------------------
------S---------S-SS--------------------------------------------S---------------
----------------S------SS---------------------S----S------S---------------------
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--------------------------S-----------------S-----S-S--------S--S-S-------S---S-
------------S-------------------S--S--------------S-----------------------------
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--------S--------------------------------------------S-------------------S------
--------------------S------------------SSS----------------------SSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_462
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------------------------------------------AAGTCCGACCACCAATCACC------------------
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>reverse_2467
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------------------------------------------------------------------CCAAAGTGGTCGGA
CCCTTC----------------------------------------------
