>input_sequence_84169
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---------------------------------------------ATGTCCGGGCGCGGCAAGGGAGGCAAGGGTCTCGG
CAAGGGCGGCGCCAAGCGCCACAGGAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCGGCGATCCGGCGCCTCG
CCAGGCGGGGCGGCGTGAAGCGCATCTCCGGCCTCATCTACGAGGAGACCCGCGGCGTGCTCAAGATCTTCCTCGAGAAC
GTCATCCGCGACGCCGTCACCTACACCGAGCACGCCCGCCGCAAGACCGTCACCGCCATGGACGTCGTTTACGCCCTCAA
GCGCCAGGGACGCACCCTCTACGGCTTCGGCGGCTAG-------------------------------------------
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>chr1B_1_TraesCS1B01G300900
TCAACCATGGCCGCCGGTTCTAGCATCGCTGGACTCCGCATGGCACAAAAGATGGAGAGGAGCACGGAAGGGGGAGCAAC
ACCACAAGGACAGGGAGGTTGGGGGGGGGCAACACCGCACATGCAGGAAGGGGAGGGGGTGGGTGTCATCGGTGGTGGCT
GCCATGGCGGATAAAAGAGGAGAGCTTGGTGGGGAAAGAAACAAAGGAAGCAGAGATAGATCGATGCGTGGACGAATAAG
AAAATGTAAACGCTTGAATGGATAAGGAAAGAGAAAGCACCTAACATCGTGACGTGGAGATAGCACCGAGCGTTACACAG
CACGCGACCGGCCTAAGCTTCGGCCGGCGCGCCGGTCCAAAACGTTTTTCAAAATATATCCAATCCAATATTATAAAGGA
GGAAACGCAGAACCCGGCGACCAGCCACCCAACACCCGAAAAAAAAAACCTAAATTTTTT--GAGCTGGCGCCTCAATTT
CAGGCCCGCCCCGCCACTCCAGCAGCCGGGGCCTCCCGCCAGATTATCGATCCGCGGCATCTCTCTCGCGGGTCGCGATC
TCAACCGTGCGCTCCATCTGCATCGAACGGCAGGAACACGCCTCCTCCCACCTCTCGCCCCCGTTAAAATCCCCACCCCC
CCTTAGGGCATGTACAATGGTTCTATCTTAAGAATGCCACGTAGGATAAATGATGAGGTGTAGGAGAGAGAAATCGTAAG
ATAAGGCTTGTCTTCTCTTATTTAAGAGAAGACAAGAGATGATATCTTAGCACAATTTGTCTCATCATGTTTTTAGGAAC
AACTAATTATTGAAGATAAGGCTAAGAAATGACCCATTGTAGACATGCTTTTTTATCATCTCTAATTTACATGCAAGACT
TAAGATAAGACTATCTTATCAACCATTGTACATGACCTTACGGCAAATCACCACAG-CAATCACCACCGCTCCTCAA--C
CTCCATCCGCTCGCAGCTCGAACCAAGGCGAGTTCGTCAGCGACCATGTCCGGGCGCGGCAAGGGAGGCAAGGGTCTCGG
CAAGGGCGGCGCCAAGCGCCACAGGAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCGGCGATCCGGCGCCTCG
CCAGGCGGGGCGGCGTGAAGCGCATCTCCGGCCTCATCTACGAGGAGACCCGCGGCGTGCTCAAGATCTTCCTCGAGAAC
GTCATCCGCGACGCCGTCACCTACACCGAGCACGCCCGCCGCAAGACCGTCACCGCCATGGACGTCGTTTACGCCCTCAA
GCGCCAGGGACGCACCCTCTACGGCTTCGGCGGCTAGGCTCGTCCTCGCCCCCGTGCAAATTCCGATGTGCTTATCCGCC
TGTGCGCAGGAGTCTTGCTGTCGAGAAAACTTAGCTGAAATGAAATCCCCATGTTTATCTCCGCTGTTTCTTTCGTAGGA
TTAGCTGTATTGTCAAACAAAGCTGTTCGCATCTGATCTGATGCTTGAGTCCAATCTTGTGTCTACGCAAATATTGTGGT
TC------TGT------TGTGATTTTTACCGCCAGGCTGTTGCAATTGTGGTGTGTCGTCGGTTGTTCCTTCTGTCGTGC
AAGATTTGGTTGCTTGTACTGAAGTACAGAACGAAATTTCCAGAGTTCAGTCTGCATTTCAGACAGAGAATGCTCCGATT
AAAGGTGGATTTATGGGCCTAGAGTGGAATACTAATAAACAGATTCGCCATTCTTGCGCTGGACCATTTGGATTTCCAGA
TGATTAACTTTGTAGTCTAATTTGCGATGTGAAGGATCTACAATGACTGAATCATTTGGTCATGTGGTTCGTGTCAGTGA
TCAGCGAAGGCCATTTGCTTTGTTACTGCAGAAACGTTACATTACCCAGCAACATTTC----------------------
----------TTCCTTACCAGCTTATCAGCGT--------------------------ACCAC----TGTTGTTCTAGAA
TAGGAGAGTTTACTTCATCTTCAAACCTGGGAGCATCAGTTGCTTACTTGGTCTTGATGCCCTTACAGCAGTGTGTTAGA
GCCAGAT------CCTGCAAAAGCCTGCATTAGCAGGTTTATTTCCGTGTATAGATAGATGATTTTTCAATCATGAGGGG
AGG-----------------------------------------------------------------------------
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-----------------------------GCAAGGACCTGTGAATCCTAGAATCCTAAAAAAGTTAACTCCAGTAAGCAA
TGGAAATGGGAGGACAAGTGATGCGTTGGGTCAAGTGTCTTCTGAATTATCTTCAGACATCCAAAATGGTTCAGATGAAG
AATACTCCCTCCGATCCAGTCTGTGCTTAGAAGACACGTCACAT---AGTACAAATCAATCATTCTGCAGAACAACAATG
CAGCAAGTATAGGAACATAGCTGGCC
>chr1B_392
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-----------------------------------------------------------------------TATAAAGGT
GGAAACGCAGAACCCTGCGACCAGTCACCCAACACCCGCAAAAAAAACACCCTGAAAATTTCGAGCTGGCGCCTCAATTT
CAGACGCGCCCCGCCACTCCAGGAATCGGCGCCTCCCGCCAGATCATCGATCCGCGGCACCTCTCCCCCGGATCCCCATC
TTGACCGTCCACTGTATCCGCATCGAACGGCAGGAACACGCCTCCTCCCACCTCTCGTCCCCGTTAAAATCCCCACCCCC
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-------------------------------------TTCCTGCAAATCACCACAG-CAATCACCACCGCTCCTCCA--C
CTCCATCCACTCGCAGCTCGAACCAAGGCTAGTTCGTCAG---CCATGTCCGGCCGCGGCAAGGGAGGCAAGGGGCTCGG
CAAGGGCGGCGCCAAGCGGCACAGGAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCGGCGATCCGGCGCCTCG
CCAGGCGGGGCGGCGTGAAGCGCATCTCCGGCCTCATCTACGAGGAGACCCGCGGCGTTCTCAAGATCTTCCTCGAGAAC
GTCATCCGCGACGCCGTCACCTACACCGAGCACGCCCGCCGCAAGACCGTCACCGCCATGGACGTCGTCTACGCCCTCAA
GCGCCAGGGACGCACCCTCTACGGCTTCGGCGGCTAGGCTCGTCCTCGCCCCCCTCCAAATTCCGATGTGCTTATCCGCC
TGTGCGCAGGAGTCTTGCTGTCGAGAAAACTTAGCTGAAATGAATTCCCCATGTTTATCTCTGATGTTTCTAA-GTAGGA
TTAGATGTATCGTGAAACGAAGCTGGTCGCACCTGAA-----GTTTGAATCCAATCTTGTGTCTACGCAAATATTGTGGC
TGTGGTTTTGT------TGTGATTTTTACTGCTGCGCCGTTGCAATTGTGGTGTGTC---GGTTGTTCCTT------TGC
AAGATTTGGTTGATAGTACTGAAGTACAGAATGAAATTTCCCGAGTTCAGTCTGCATCTCAGACATTGT-----------
----------------------------------------AGATTTGCCATTCTTGAACGGGTC----------------
----------------------TACGACGTGAAC------TAATGACTGAA--------TCATGTAGTCCGTGTCAGTAA
CCAGGAAAGACCATTTGCTATATTTCTTCTTATTTTCTGTGACTGTGGAAATGTTCACAGTGGTATGTTGAAACATTAGC
AGCAATACCATTTCTTACTAGCTTATCAGCAT--------------------------ATACCACTGTGATGTTCTAGAA
TAAGAGAGTTTACTTCATCTTCAAACCTGGGAACATCAGTTGCTTA------CTTGATGCCCTTACAGCAGTGCGTTAGA
GCCAGGGCCAGAGCCAGCAAAAGCCTGTATTAGTAGGTTT---------------------ATTTTTCAATCATGAGGGG
AGGTGTCAAGTAGCGAGCAATAACCGCACTGTCGGTCGATGGTGCTTTTTCGGAGGCGGATGGATCAGCAGCAGCGGGGA
TGGTGCTGAGACGAAGTGACGGTAGCGTCATCTTTGCAGCGTGTCGGTGTATTTTCAACTGCAATGACGCCCTAGAAGCT
GAACTACATGCTCGAATGCAAGGGATGGCACTTGCTATTGAGCACGGTGAGACTGATTCGTCAGAAGCTTTCATGGCATT
GAGAGGGGACAATCTTCGGTATTCTGCTTATGGACATTTGGTGGCTGAGATTCAGCGGCACATGGGTGTAAGAGAGTTTA
TTCCATCGAAAATTAAGCGTGAACAAAACAGGGTAGCAGATCGATTGGCTTTGTATAGTCGTAGGGAGAGTACTACTGCT
GTATGGCTAGGTAGAGGTCCACCTTGCGTGGAGGAACTATTGCCTCTTGATTGTAACCTTGTGATTCTGGAATAAAATCT
CTTTTACCCTCGCAAAAAAAAAGTAGCGAGCAATGACCTGTGAATCCTAGAATCCTAAAAAAGTTAACTCCGGTAAGCAA
TGGAAATGGGAGGACTAGTGATGCGTTGGGTCAAGTGTCTCCTGAGTTATCTTCAGATATCCAAAATGGTTCAGATGAAG
AATACTCCCTCCGATCTAGTTTGTGCTTAGAAGACACGTTACAA---AGTACAAATCAATCATTCTGAAGAACAGCAATG
CAGCAAGCATAGGAA-----------
>chr1D_914
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-----------------------------------CCTTCCGGCAAATCGCACAAACAAACCACCACCGCTCCTCCAATC
CCACATTCGCTCCAAGCTCGAACAAAGGAGAGACCGTCAG---CCATGTCCGGGCGCGGCAAGGGAGGCAAGGGGCTCGG
CAAGGGCGGCGCCAAGCGCCACAGGAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCGGCGATCCGGCGCCTGG
CTCGGAGGGGCGGTGTCAAGCGCATCTCGGGGCTCATCTACGAGGAGACCCGCGGCGTGCTCAAGATCTTCCTCGAGAAC
GTCATCCGCGACGCCGTCACCTACACCGAGCACGCCCGCCGCAAGACCGTCACCGCCATGGACGTCGTCTACGCCCTCAA
GCGACAGGGCCGCACCCTCTACGGCTTCGGCGGCTAGGCTCGTCCTCGCCTCCCTGCAAATTCCGATGTGCTTGTTCGCA
TGTGCGCAGGAGTCTCGCTGTCGAGAAAACTTAGCTGAAATGAAATCCCCATGTTTATCTCCGCTGTTTCCTTCGTAGGA
TTAGCTGTATCGTCAAACAAAGCTGTTCGCATCTGAA-----GCTTGAGTCCAATCTTGTGTCTACGCAAATATTGTGGT
TC------TGT------TGTGATTTTTACCACTGGGCTGTTGCAACTGTGGTGTGTCGTCGGTTGCTCCTTCTGTCGTGC
CAGATTTGGTTGCTTGTACTGAAGTACAGAACGAAATTTCCAGAGTTCAGTCTGCATTTCAGACAGAGAATCCTCCGATT
AAGGGTGGATTTATGGGCCTAGAATGGAATGCTGATAAAAAGATTTGCCATTCTTGCACAGGATCATTTGGATTTCCAAA
TGATTAACTTTGTAGTCTAATTTGCGATGTGAAGGATCTACAATGACCGAATCATTTGGTCATGTCGTTCGTGTCAGTGA
TCAGCGAAGGCCATTTGCTTTGTTACTGCAGAAACGTTACATTACCCAGCAACATTTC----------------------
----------TTACTTACCAGCTTATCAGCAT--------------------------ACCAC----TGATGTTCTAGAA
TAGGAGAGTTTACTTCATCTTCAAACCTGGGAGCATCAGTTGCTTACTTGGTCTTGATGCCCTTACAGCAGTGTGTTAGA
GCCAGAT------CCTGCAAAAGCCTGTGAA-------TTATTTCCGTGTATAGATAGATGATTTTTCAATCATGAGGGG
AGG-----------------------------------------------------------------------------
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-----------------------------GCAAGGACCTGTGAATCCTAGAATCCTATAAAAGTTAACTCCTGTAAGC--
---AAATGGGAGGACTAGTGATGCGTTGGGTCAAGTTTCTTGTGAATTATCTTCAGACATCCAAAATGGTTCAGATGAAG
AATACTCCCTCCGATCCAGTCGGTGCTTAGAAGACACGTTACATAGTAGTACAAATCAATCATTCTGCAGAACAGCAATG
CAGCAAGTATAGGAA-----------
>chr1A_919
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----------------------------------------CGGCAAATCGCACAAAACAACCACCACCGCTCCTCCAATC
CCACATTCGCTCGCAGCTCGAACCAAGGAGAGACCGTCAG---CCATGTCCGGGCGCGGCAAGGGAGGCAAGGGGCTCGG
CAAGGGCGGCGCCAAGCGCCACCGGAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCGGCGATCCGGAGGCTCG
CTCGGAGGGGCGGCGTCAAGCGCATCTCCGGCCTCATCTACGAGGAGACCCGCGGCGTGCTGAAGATCTTCCTCGAGAAC
GTCATCCGCGACGCCGTCACCTACACCGAGCATGCCCGCCGCAAGACCGTCACCGCCATGGACGTCGTCTACGCCCTCAA
GCGCCAGGGCCGCACCCTCTACGGCTTCGGCGGCTAGGCTCGTCCTCACCTCCGTGCAAATTCCGATGTGCCTATCCCCC
TGTGCGCCGTAGTCTCGCTGTCCAGAAAACTTAGCTGAAATGAGTTCCCCATGTTTATCTCCGCTGTTTCCTTCGTAGGA
TTAGCTGTATCGTCAAACAAAGCTGTTCGCATCTGAA-----GTTTGAATCCAATCTTGTGTCTACGCAAATATTGTGGT
TG------TGGTTTTGCTGTGATTTTTACTGCTGCGCTGTTGCAATTGTGGTGTGTC---GATTGTTCCTTCTGTAGCGC
AAGATCTGGTTGCTAGTACTGAATTACAGAACGAAGTTTCCAGAATTCAGTCTGCATTTCGGACATTGT-----------
----------------------------------------AGATTTGCCTTTCTTGAACGGGTC----------------
----------------------TGCGACGTGAACTATCTATAATGACTGAATCAT--------GTGGTTCGTGTCGGTAA
CCAGGAAAGGCCATTTGCTCTATTTCCAAACATC-------ACTGTGGAAATGTTTTCATTGGA----TGAAATATTAGC
AGCAATAACATTTTCAAACCTAGGAACACTTCATCTTGGTTTTCGTTGGACGTTAAGCATACCACTGTGATGTTCTAGAA
TATGAGAGTTCACATCATCTTCAAACCTGGGAACATCAGTTGGTTACTTG------ATGCGCTTACAACAGTGTGTTAGA
GCCAGAT------CCTGCAAAAGCCTGCATTAGCAGGTTTATTTCCGTGTATAA----ATGATTTTTCAACCATGAGGGG
AGGTGTCAAGGGAACAGTGAATAACCT-----------------------------------------------------
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----------------------GTAGCGAGCAATGACCTGTGAACCGTAGAATCCTAAAGAAGTCAACTCCAGTAAGCAA
TGGAAATGGGAGGACTGGTGAGGCGTTGGGTCAAGTGT--TCTGAATTATCTTCAGATGTCCAAAATGGTTCACATGAAG
AATACTCCCTCCGATCTAGTCTGTGCTTAGAAGACACCTTACATAGTAC-------------------------------
--------------------------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------S
---------------S--------S-------------S--------SS-SSSSSSSS----------------------
---S-S----------------S-SS---S--------------S--------------S-----S-S---S--S-S---
-SS-----S-S--SS---S--------------------------------------S----------------------
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----S-----------------------------------S----
----------------------------------------SSS-------------------------------S-----
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----------S-------------------------SSSSSS--------------------------------------
--------------------------------SS----------------------------------------------
-----------------------------------------------------------------------S--------
--S--------------------S------S--S-----S-----S-----------S-S------------------S-
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------------S-----------------S--------------------------------------S----------
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---------------S----------------------------------------------------------------
---------------------------------------S----------------------------------S-----
---------------SSSSSSSSSSS
>forward_310
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--------------------------------------------------GACGTGGAGATAGCACCGAG----------
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>reverse_1553
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--------------------------------CAGGCTGTTGCAATTGTGGT----------------------------
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