>input_sequence_84134
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----------------------------------------------------------ATGGAGGGTCTATCATTGGCTA
TCCAGCGAACTGAGCTTCCAGTTGCAATCGAGATGGACTCCCTTATTGCAGTGAAGATGATCCAGGCAAAAGAGGTGGAT
AGATCACTCTATGCATCGCTTATCAAGGAGATTAGATATCTTATGTCTATTCATGAATCATGTATTACTTATATCGTTCG
TAGCCAAAATAAAGTTAGTAATAGTTTAGCTAAGTTTGCTCGTTTAGAAGGTCGAACCATGACTTGGATCAGTTCTGGGC
CTTTGGTTGCTACGGAGTTAGCTACGATTGACTGTATGAACTTCTCGAGGTGA---------------------------
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>chr7D_1_TraesCS7D01G373200
TCTTCTATGATCTAATTAAGTTAAGCAGTGGTTATTTTTTAAGTGACTAGAACTTCTATCAACTACTATTCTAGCACCCA
GCCGTGCCATGTGTTTATTCTATTCTATTCTATTCTTCAGGACAAACCGAGACCGATGCTCCAGATGCCGCCTAGTTATT
TT-GTTGTCGTCATGTGT-TTTATTTGTGTGTTGCA-TTCATCATCGCATCATTCACATTGCATCGGCACTTCGTTGTCG
TCATGTTTTAAAAACTTGCATCCG-CTCGTAGTTGCCGCTTCTTCCTTG-------TCTCTGTTGACCTCCTCTCAGGTC
AACCGGACCGCTCTCTTCTATCTCTTCTCCGAGCCCATCAAACTCCCCTCT--------CTTTCGTCAAACCCCTCGC--
GCGCGTCCG-AAAGCTGTCCCAAACCCGATCCGGGCAGTCGTGACCGATGGGTCTGGATCATCCCCAAACATCCCCAAAA
TATCTTCGGTTTGTTCTTTGGACTCTCCTAGCCTTTTA-TCTAAACCATTCAATCTTGATCAGAGGGTC--GGTGTAGCC
CCTACC-CTAATCCCACTGCTATATAAACCAG----CCTACCCTAACCCTAGTCTACCCAATCCCATCCGCGCCGCCGCC
GCTCTCTTTCTTCC----CCTCGGGATCCATCCCCACCAACCACAGCCTCCGACCAAATCCCTGGTTTTCCGCGCAGCCG
CCCAAGCATCTCGTTCCCGAGTGGATCGAGCGCTTCGCCTCCAAGCCCC-------------------------------
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---------------------------------TCTCGGTCGGACCTCCTCCTCCGGCCTCTCCATTTCCTTTTCGCTCT
CTGCTCCTAGTTGCTTCTGACAGTCGCCGCCGCTGTCACCTTGTGCTGTAGGAGTCCGCCAATCGCCTCGGCTCTAGCCA
CCCCCGCCGCTCGCGCCCCGCCGAAGATATTTTGGGGATGTTTGGGGATGATCCGGACCCATCGGTGCTATTATTTTCTC
GTCATGCAGGCAACTTTTCTCTTATCGTGAATCCCTCGAAGCTGAACTATATGCGTGTATGGAGGGTCTATCATTGGCTA
TCCAGCGAACTGAGCTTCCAGTTGCAATCGAGATGGACTCCCTTATTGCAGTGAAGATGATCCAGGCAAAAGAGGTGGAT
AGATCACTCTATGCATCGCTTATCAAGGAGATTAGATATCTTATGTCTATTCATGAATCATGTATTACTTATATCGTTCG
TAGCCAAAATAAAGTTAGTAATAGTTTAGCTAAGTTTGCTCGTTTAGAAGGTCGAACCATGACTTGGATCAGTTCTGGGC
CTTTGGTTGCTACGGAGTTAGCTACGATTGACTGTATGAACTTCTCGAGGTGAGTAATACATTTTTCACCCGCAAAAATA
AACCTTGATTGCTGATTTATGTGTCACCGGAAACTGGAAAAAAGAAAACTCGATCCGGCCATGGAGTAAACAGAGCCGAC
ACACCAACATAGAACTCAACCTTTTTATTCCCTCCTCTTGTTCCAGAAGGATTCATCATCCATGGAGCTGCCGTGAGGCA
GAG-CAGAGCAGAGCACATGGCGGGCAGGTGGCATGAACAAAATACGCTAACACAAGAAAACTAAAGATAAACATCGGAA
TTAAACACGAGTCTGACAAATCACAAAGACAAGCCCTCGTCCCTAAGCATCCTCCGTTTCACCGAACCATCTTATTGATT
TTGCGCCCCCAAACACCAGCGTACGTACGCCTCTTGGTGTCCGTGGTTCATTGCTTTGCTTTAGGCGTCCACGATGTCGC
CGTTGTTGGTCGCCGCCAGGATCATCTCCGGGTGCAGCGCCGGGGTCACGTTCTTGAGCGTCCCGTCGATGCCGTTCGGC
CGGCCGAGGGCCTTGAGCGCCAGGTGCGCCGCCTTCTGGCCGGAGATCATCATGGCGCCGAAGGTCGGGCCCTGTAACCA
ACAGCCGCCACAAGACAAAACAAATTAATCCGGTCAGTCCAGCACAAGTCGAAAGGAGATTCTTCTTCTTCTTCTAAGAA
GAGGACGCGTGTATAGGAAAGCAAAAATTTAGGAGTACCATTCTCGGGGCGCCGTCGATCTCGGCGACCTCCATGCCGGT
GACAATCATGCCGGGGACCACCTCGCGGGTGAGGCGCACGATGGCATCCTCGGCGGTGTTCATGTCGAGCGCCTTCATCC
CGGGCACCGCCTGGATCATGCCGATGTCTTGGAGCCGCTTGACCCCGGTGGCGCCGAAGGGCCCGTCGTGGCCGCAGGAG
CTCACCACGACCTTGGCCTCCATGACGTTGGGGTCCATGCAGGACTGTGTGTCGTGGTTCATGGAGACGAGCGCCCAGTT
GGTGACGACGCCGG
>chr7D_127
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----------------------------------------------CCGAGACCGACGCTCCAGACGCCTTCCATGTTTT
TC-GTTATCGTCGTGTGTATTTACTTGTTTGTTGCA-TTCATCGTCGCATCATCTGCATATTATCGGCACTTCGTTGCCG
TCA-GTTTTCAAAACTTGCATCTG-CTCGTAGTTGCCGCTTCTTCCTTG-------TCTCGGTTGACCTTCTCTCGGATC
AACTGGACCGCTCTCTTCTCTCTCTTTTCGGAGCCCATCAAACCCTTTGTCTCCGTGGCCTTTTGTCAAATCCCTCGC--
GCCCGTCCG-AAACCTCTCACGAATCCGACCTGCTTAGTCATCACCGTTGGATTCAGATCATCCCCAAACATCTATAAAA
CTTCTTCGGTTTCTTATTTGGGCTTTCTAACCTATTAATCTCACACTGTTTGATTACGATCGAAGGGAC--GAT-TAGTC
CCTAAC-CAAATCCACCTGCTATATATACACAAGGTCCAACCCTAAATTTCAGGAGCCTTGTCCCATCCTCCCAGCCGCC
GCCGCCAGTCTTCTTCCACCTCGGGATCCCTCC-----------------------------------------------
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>chr6A_127
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----------------------------------------------CCGAGACCGACGCTCCAGATGCCTTCCAGTTATT
TC-GTTGCCGCCGTGTGT-TTTATTTGCTTGTTGCATTTCATCATGTCATCATGAGCATTGCATCGACATGTT-------
-----TTCACAAAACTTGCATCCG-TTTGTAGT-GCCGCTTCTCGTTTCGTCTTGGTGTTCTTTCTCA--------TACC
GACCAGGTTTTGCT--TCCCTCTTGTATG---GCCGCATAACCTCTCCGCA--------CAACCCAC--ACTCTTTGCTG
CCTTGTCCGAAAACCTCTCCTGAACCTGAACTTGGCTCTCGTGACCAATGGGTTCGGATCATCCCCAAATATCCCTAAAA
TATCTTCGGTCCTTTGTTAGACTCTCCTAGCCTATTTTTCTCGGACCGTCCGATGTCGATCGGAGGGCC--CGTATAGCC
CCTACC-CTAATCCCACTGCTATACAAACCAG----CCTACCCTAACACTACTCTACCCAATCCCATCCACGCCGCTGCC
GCTCTCTTTCTTCC----CCTCGGGATCCATCCCCACCAACCACAGCCTCCGACCAGATCCCCGTTTCTTCGCGCAGCTT
CCCGAGCATCACGATCCCGAGTGGATCGAGAGCTTCGCCTCCAAGCCCCGCCACCTCCAGCTGATCTCCAGTGCGCCCTA
GCTCCACCTCGTGTGCACGCCTCCTCATGCCCGAGCCGAGCTCCTCGATCCACCCTCGCGCTTGTCCTTCCTTTGCCTCT
ACCTCGTCAGCCTTGACCCCGCGCCACAGGCACATATCCGGCCAGCCACCAGCGACAACCAACACCACCAGGCTGTGCCC
CTGTTTCCTTCTCTCTCCCTCGAGTTCTCTCTCTCTGGTTCCTCAAATTCCCTTTCTTCTCTCTATTCCACATGACGCCA
TGGATGCAACAGCTCGACCCCGCCGTGGCCTCGACTCCTCCGCTCCAGTCGTCGTCGCCGGAACGCCACCATAGAGCCAA
GGCCGAGCCCCATGGCGCCCGTCATCAGCGACCCAAGCGCGCTTGAGATGCCCTTCCTCCAGCTGGCCTCCTTCGAGCGC
TGCCCCTTGCCAACCTCCTCTGCCCGCCGCCCCTCTCGGTAGGATCTCCTCCTCCGGCCTCTCCATTTTCTTTTCGCTCT
CTGCTCCTAGTTGCTTCTGACAGTCGCCGCCGTTGTCACCTTGTGTTGTAGAAGCCCGCCAATCTCCTCGGCTCTAGTCA
CCCTCGCCG-----------------------------------------------------------------------
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>chr2D_127
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----------------------------------------------CCGAGACCGACGCTTCAGACGCCTTCCATGTTTT
TTTGTTATCGCCGGTTGT-TTTATTTGTATGTTGCA-TTCATCATCGCATCATTCGCGTTGCATCGGCACTTCGTTGCCA
TCA-TGTTTTAAAACTCTTAGTTCATTTGTAGTTGTCGCGTCTCTCCGT-------TGTCCGTTCCGA--------GACC
AACCGGGTTTTTCGAGTCCCTCTTGTCTG---GCCACTTAATCTCTTTGCT--------CAATGCTCGAACCCCTCGCTT
GCTCGTCCG-AAACTTC-CCCGAACCCGAACCGCACGGTCACGACCGATGGGTCCGGATCATCCCCAAACATCCCTCTAA
TATCCTCGGTTCTTTGTTGGACTCCCCTAAGCCATTTATTCACAACCGATCGATTTCGATCGAAGGATTCAGAT-TAACC
CCTAAGACTAGTCCACCTGCTATATAAACCAA----CCTATCCTAACCCTAGTCTACCCAATCCCATCCGCGCCGCTGCC
GCTCTCCTTCT----------CGGGATCCATCCCCACCTACCGCAGCCTCCGACCAGATCCCTGGTTTTCCGTGCAGCCG
CCCGAGCATCTCGATCCCGAGTGGATCGAGCGCTTCGCCTCCAAGCCC--------------------------------
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>chr7B_1340
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-----------------------------------------------------------------------------ATA
GACCTTGATTGTTGATTTATGTGTCACCGGAAACTG-AAAAAAGAAAACTCGATCCGGCCATGGAGTAAACAGAGCCCAC
ACAACAACATAGAACTCAACCTTTTTATTCCCTCCTCTTGTTCCATAAGGATTCATCATCCATGGAGCTGCCGTGAGGCA
GAG-CAGAGCAGAGCACATGGCGGGCAGGTGGCATGAACAAAATACGCTAACACAAGAAAACTAAAGATAAACATCGGAA
TTAAACACGAGTCTGACAAATCACAAAGACAAGACCTCGTCCCTAAGCATCCTCTGTTTCACCGAACCATCTTATTGATT
TTTCGCCCCGAAACACCAGCGTACGTACGCCT--TGGTGTCCGTGGTTCATTGCTTTGC-TTAGGCGTCCACGATGTCGC
CGTTGTTGGTCGCCGCCAGGATCATCTCCGGGTGCAGCGCCGGGGTCACGTTCTTGAGCGTCCCGTCGATGCCGTTCGGC
CGGCCGAGGGCCTTGAGCGCCAGGTGCGCCGCCTTCTGGCCGGAGATCATCATGGCGCCGAAGGTCGGGCCCTGTAACCA
ACCGCCGCCACAAGACAAAACAAATTAATCGGGTCAGTCCAGCACAAGTCGAAAAGAGATTCTTCCTCTTCTTCCAAGAA
GAGGACGCGTGTATAGGAAAGC-AAAATTTAGGAGTACCATTCTCGGGGCGCCGTCGATCTCGGCGACCTCCATGCCGGT
GACAATCATGCCGGGGACCACCTCCCGGGTGAGGCGCACGATGGCATCCTCGGCCGTGTTCATGTCGAGCGCCTTCATCC
CGGGCACCGCCTGGATCATGCCGATGTCCTGGAGCCGCTTGACCCCGGTGGCGCCGAAGGGCCCGTCGTGGCCGCAAGAG
CTCACCACGACCTTGGCCTCCATGACGTTGGGGTCCATGCAGGACTGTGTGTCGTGGTTCATGGAGACGAGCGCCCAGTT
GGTGACGACGCCGG
>chr7A_1340
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-----------------------------------------------------------------------------ATA
GACCTTGATTGTTGATTTATGTGTCACCGGAAACTG-AAAAAAGAAAACTCGATCCGGCCATGGAGTAAACAGAGCCCGC
ACACCAACATAGAACTCAACCTTTTTATTCCCTCCTCTTGTTCCAGAAGGATTCATCATCCATGGAACTGCCGCGAGGCA
GAGGCAGGGCAGAGCACATGGCGGGCAGGTGGCATGAACAAAATACGCTAACACAAGAAAACTAAAGACAAACATCGGAA
TTAAACACGAGTCTGACAAATCACAAAGACAAGCCCTCGTCCCTAAGCATCCTCCGTTTCACCGAACCATCTTATTGATC
TTGCGCCCCCAAACACCAGCGTACGTACGCCT--TGGTGTCCGTGGCTCATTGCTTTGC-TTAGGCGTCCACGATGTCGC
CGTTGTTGGTCGCCGCCAGGATCATCTCCGGGTGCAGCGCCGGGGTCACGTTCTTGAGCGTCCCGTCGATGCCGTTCGGC
CGGCCGAGGGCCTTGAGCGCCAGGTGCGCCGCCTTCTGGCCGGAGATCATCATGGCGCCGAAGGTCGGGCCCTGTAACCA
ACCGCCGCCACAAGACAAACGAAATTAATCCGGTCAGTCCAGCACAAGTCGAAAAGAGATTCTTCTTCTTCTTCCAAGAA
GAGGACGCGTGTATAGGAAAGC-AAGATTTAGGAGTACCATTCTCGGGGCGCCGTCGATCTCGGCGACCTCCATGCCGGT
GACAATCATGCCGGGGACAACCTCGCGGGTGAGGCGCACGATGGCATCCTCGGCCGTGTTCATGTCGAGCGCCTTCATCC
CGGGCACCGCCTGGATCATGCCGATGTCCTGGAGCCGCTTGACCCCGGTGGCGCCGAAGGGCCCGTCGTGGCCGCAGGAG
CTCACCACGACCTTGGCCTCCATGACGTTGGGGTCCATGCAGGACTGTGTGTCGTGGTTCATGGAGACGAGCGCCCAGTT
GGTGACGACGCCGG
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------S------------SS-S-------
------------S---------------S--------------------------S---------------------S--
---S-----S--------------------------------------------------S--------S-----S-S--
-------------------S---------S---------------S--S-------------------------------
--S----------S--S----S-------S------------------------S--------------------S----
------------S--S-----S-----SS----S-------S-----S---S--S-S----S------------S-----
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--------------------------------------------------------S-----------------------
---S---------S------------------------------------------------------------------
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----------------------------------------S---S-----------------------S-----------
--------------------------------S------------S-----S--S---------S------------S--
---S-----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---
S----------S------------------------S----------------------------------------S--
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--------------------------------SS-------------------------S--------------------
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--S---------------------------------------------------S-------------------S-----
----------------------S---------------------------------------------------------
------------------------------------------------------S-------------------------
----------------------------S---------------------------------------------------
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>forward_301
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-----------------------------------------GCCGCTTCTTCCTTGTCTCT-------------------
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>reverse_1754
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-------------------------------------------------------------------------TCTGGGC
CTTTGGTTGCTAC-------------------------------------------------------------------
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>forward_430
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----------AAAGCTGTCCCAAACCCGAT--------------------------------------------------
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>reverse_2220
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-----------------------------------------------------------TTTAGGCGTCCACGATGTCG-
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