>input_sequence_84121
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-----------------------------------------ATGGCCGCCTGGCTGAGGAAGGAGACGGCCGAAGCATAC
TAC---CTCGCGGTCGATGCAGGGGGCGACAGAGGAAAGAAGATCCCCAAGGGGTACCTCCCGCTGGCGCTGGTGGGCGA
GGAGGGAGACGGCGACGAGCGGGTGCTGGTGCGCATAGGGGCGCTCAAGGAGCCGTGCATGGCGGCGCTGCTGGAGATGG
CCGCGGAGCAGTTCGGCTACGGCCAGCCCGGCGTCCTCAGGATCCCCTGCGACGCACAGCAGTTCCACCAAATGGTCAGC
GCCATGTGCGGCAAAGAGCAAAGCCACGTAACTAGGTGA-----------------------------------------
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>chr6D_1_TraesCS6D01G060100
CGAGGATTGTAGGTGGTTTCTCAACCTACTACCAGTGGTTACAATTTTTTTTGTAATTTGTGTTTTCTATCCATTACTAA
AGATAAAAAACAATGCAAACAATAATAAAAACTAATTAGTGATTTCGGCCATCGGGGATGCTCTTGCCGAGCGAGCTCCA
GCCGGCGTCGCATTGCAGCGTAGCCCCAGGCGGAGTCCTCGTGGGAGGTGGTGATGAGGCAAGAGCCTGGCGTGAACCCA
CGCCGGTACCGCAAGCTCGCCGGTGCTAGGTAACAACCGTTTTGTCCAAGCCGTCACCCTAGCCCACATGTGGGCCCAAC
CTATCTGAATGGGGTTTAAATTAACTAACCGG-TCATCAGAATATTTTGCGAAAGAATTAGAAAAAAAGTAGTATGTGCC
AGCGAATAAATTAAAGGTTGTGGAGTAGTTTCTTACTACCCTAACCTGAATTATGATAGCTTTTATGCCATTTAGTCCAG
AAATCTGGATCTGGAATAGCCTAACTTCCAAAGACTGGA-----------------------TTTAAAAAGAACGAAGCC
TCCCCGCCAGCTGAAATGAGCTTGTCCTACTTAAATTTGTTTCA-TCTTGGTCGTCCAAAGGTAGAGATCTGTATCAGTC
TGGA--GTACACAACCGTACGGACCCCGCAAATTAACCTGCTGCCTCTTTTTTGCTTGACAGCGACCATTTGTGGATGAT
TTGACTAATCCCAAAACAAATTGTCAGGACATCAGACCCCATCCTCCACGCACGCAGTCACCATCACG-ACGCCTTGTCA
CATACCCTACGTTTCCC---ATCTGAACTGAACGTCTGAAC-TCTGAACCCCTTTCCAAACTCACTCACTGCTCTCGTCA
TTTTGGATGATCCTCCTCTCTCTCTCC---CACACTATAAAGCATATGGCATGAAGCTCTCCAGCAATCAGCA-------
--------------------CACGATCGGCCATCA--------------ATCAAACCATCAACACCTTCAGTTCCCGTGC
TAGCTACCC-----ACGCAACGCACATAAACAGCAGCAGCAATGGCCGCCTGGCTGAGGAAGGAGACGGCCGAAGCATAC
TAC---CTCGCGGTCGATGCAGGGGGCGACAGAGGAAAGAAGATCCCCAAGGGGTACCTCCCGCTGGCGCTGGTGGGCGA
GGAGGGAGACGGCGACGAGCGGGTGCTGGTGCGCATAGGGGCGCTCAAGGAGCCGTGCATGGCGGCGCTGCTGGAGATGG
CCGCGGAGCAGTTCGGCTACGGCCAGCCCGGCGTCCTCAGGATCCCCTGCGACGCACAGCAGTTCCACCAAATGGTCAGC
GCCATGTGCGGCAAAGAGCAAAGCCACGTAACTAGGTGATTGTGATTTGTCTATTC------------------------
------TCTCGGTTTATCGATAGGTGAACAAGT----GTGATATGCTTTCTGGGCCAGTTTATTTAGTTAGACTTAGACA
AGGAACAATTCGTAGTG---------------------------------------------------------------
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------------------------CGCGTCGTCTAAACATGTGTGCTCCTGTCTGAACATGGGAGCGGTTGCGCGCGTAC
GTGCGACTTTGTCACTTCAATTAGCTACGAACTGAATAGCGCTCCTGTCAATTTGGTTGTTCAGTGACCTGTTTGTGCAG
TGCAAATCAACATTTGTTCACGCAGCTATTTCAATTTTTCTCTAGTGCCGTGTTGGTGCTCCTTC--------TCTTCCT
ACAGCGCAAAACAACATTTGTCACTTAACGCCCAAATTGACAACTAAATTCAGTTTCAACAGATAAATCGGAATCGACAG
TAGATGCAGTTTGGGCAGTAGCGGGGCCAGCGAACTGCCAATGCCTGGGCACACCTTAAGCTAAAATTTGTTTTGGTCTA
TCACACAACACAAGTATCATATGTTTAGAATAAAGTCGTGTGGAATATTCGCACTACTG-TTTCACACTCCCTCCGTCCT
AAAGTTAGTACAAAGTTGAGTCATTTATTTTGGGACGGAG---------GAGTAGATCATAGAACTAAATAGAAACAAAA
AGTAAAATTTTCAAACAAATCTCTAAACACTAGCCAGGCAACCAAACCTTTCGACGTCTCAACGTGAAAAGTCCAAGCTC
CAATGTTTATGTTCATGTTCAATTCTTGGTTGTGGGTCTTACGGTGGCTCCACTTGCAAATTTCTTCGTGTTAACCAAAA
AATCTGCTCAGTTCTGATATTTAAACTAGCATAACTGGACCCTGTCTCAGAAGCTGTCTTCCTACATGATCTATTCACCT
TCTAAATCGTTTCACAAGCTTTCTAAATCGTTTCACAAGCTGGTTCCTGCTTGCAGTGAGAAAGGCCCAATTGGCAAGAA
AATGTTCAAATTGGCCCAGTCAGAGCACGTTCGTTCCAGCGGTATATTCCGCGATTTG
>chr6A_172
ATTGT---------------------------------------------------------------------------
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----------------AGCATAGCCCCAAGCGGAGTCCTCAGGGGAGTTGGTGATGATTTATGAGCTTGGCATGGACCCA
TGCTGGTACCGCGAGCTCACC-GTGCTAGGTAATGGCCGTTTTATCCAAGTCTCCACCCTAGGCCACATGTGGGCCCAAC
CTATCCAAATGGGGTTTAAATTAACTAACACAATCATCAATATTTTTTTGTG----ATTAGAAAGAAGTAATAGGTAT-C
AACGAATAAATTAAAGGCTGTGGAGTAGTTTCTCTTTGGCCTAACCCCAATTATGATAG-TTTTATGCTATTTAGTCCAG
AAATTTGGCTCTGGAATAGTTTACTTTCCAAAGACCCCTTCTATAATAAGAAAAAAAAACCTTTTAGAGTGAGCGAAGCC
TCCCACCGGCGC-AAATGAGCTTGCTCTACTTAAATTTGTTTCAATCTTCCACGTCCAGATGTAGAGATCTGTATGTAGT
ACGACTGTACAAAACCGTACGGACCCCGCAAATTAACCCGCTGCCTCTGTTTTGCTTGACAGCGACCATTTGCGGACGAT
TTGACTAATCC-----CAAATTGTGTGGACATCAGACCCCATCCTCCACGCACGCAGTCACCATCACG-ACGCCTTGTCA
CATACCCTACGTTTTCTACTATCTGAACTGAACGTCTGAGCGTCTGAACCCCTTTCCAAACTCACTCACTGCTCTCGTCA
TCTTGGATCATCTTCCTCTCTCGTCTCTCACACTATAAAAAGCATACGGCATGGATCTCTCCAGCAATCATCACGACACC
ATCACACCATCGACCATCAACACCATCGACCATCAATCATCACGACACCATCACACCATCGACCATCTCTCCAC------
------GCAACGCAACGCAGCGCGCATAAACAGAAGCAGCAATGGCCGCCTGGCTGAGGAAGGAGACAGCCGAAGCATAC
TAC---CTCGCGGCCGATGCCCGGGGCGACAGAGGAAAGAAGGTCCCCAAGGGGTACCTCCCGCTGGCGCTGGTGGGCGA
GGAGGGAGACGGCGACGAGCGTGTGCTGGTGCGGATCGAGGCGCTCAAGGAGCCGTGCATGGCGGCGCTGCTGGAGATGG
CCGCGCAGCAGTTCGGCTACGGCCAGCCCGGCGTCCTCAGGATCCCCTGTGACGCACAGCAGTTCCACCAGATGGTCAGC
GCCATGTGCAAC-AAGGGCAACGCCAC-----------------------------------------------------
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>chr6B_420
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--------------------TGGAGTAGTTTCTTATTGCCCTAACCCGAATTATGACAGC-TTTATGCTATTTGCTCCAG
AGATCTG-ATCTGGAATAGTCTAACTTCCAAAGACTGGA-----------------------TTAAAAAAGAACAAAGCC
TCCCCGGCAGCTGAAATGAGCTTGCCCTACTTAAATTTGTCTCAATCTTGCTCGTCCAGATGTAGAGATCTAGTACTG--
------GTACAAAACCGTACGGACCC-GCAAATTAATGTGCTGCCTCTGTTTTGCTTGACAGCGACCATTTGTGGACGAT
TTGACTAATCC-----CAAACTGTCTGGACATGAGACCCCATCCTCCACGCACGCAGTCACCATCAACCACGCCTTGTCA
CGTACCCTACGTTTCCTACTATCTGAACTGAACGTCTGAAC-TCTGAACCCCTTTCCAAACTCACTCACTGCTCTCGTCA
TTTTGGATCATCTTCCTCTCTC---TCACACACTAT-AAAAGCATACTGCATGGATCTCTCCAGCAATCATCAGGACACC
ATCACACCATCGACCA-------------------------------CCATCGAACCATCAACACCTTCAGTTCCCGTGC
TAGCTAGCCACGCAACGCAACACACATAAACAGCAGCAGCAATGGCCGCCTGGCTGAGGAAGGAGACGGCCGAAGCATAC
TACTACCTCGCTGCCGATGCCGGCGGCGACAGAGGAAAGAAGATCCCCAAGGGGTACCTCCCGCTGGCGCTGGTGGGCGA
GGATGGGGACGGCGACGAGCGGGTGGTGGTGCGGATCGATGCGCTCAAGGAGCCGTGCATGGCGGCGCTGCTGGAGATGG
CCGCGCAGCAGTTCGGCTACGGCCAGCCCGGCGTCCTCAGGATCCCCTGCGACGCACAGCAGTTCCACCGCATGGTCGCG
GCCATGTGCAGC-AAGAGCAAAGCCACATAACTAGGTGGTTGTGATTTGTCTATTC------------------------
------TCTCGGTTTATCGATAGGTGAATACTGAGTGGTGATATGCTTTCTGGGCCGGTTTATTTAGTTAGAG------A
AGGAACAATTCGTAGTG---------------------------------------------------------------
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------------------------CGCGTCGTCTAAACATGTGTGCTCCTGTCTGAACATGGGAGTGGTTGCGCGCGTGC
GAA----TTTGCCAC-TCAATTTGCTACGAACTGAATAGCGCTCCTGTCAATTTGGCTGTTCGGTGACCTGTTCGTGCAG
TGTAAATCAACATTTGTCCAGGCAGCTATTTCAATTTTTCTCCAGTGGCGTGTTTCTGCTCCTTC--------TCTTCGT
ACAGTGCAAATCAACATTTGTCACTTAACGCCCAAGTTGACAACTAAATTCAGTTTCAACAGATAAATCGGAATCGACAG
TAGATGCAGTTTGGGCAGTAGCGGAGCTAGCGAATTGCCAATGCCTGGGCACACCTTAAGCTAAAAATTGTTTTGGTCTA
TCACACAATGCAAGTATCATATGTTTAGAATAAAGTCATGTGGAATATTTGCTCTACTCCTTTCATACTCCCTCCATCCT
AAAGTTAGTATAAAGTTGAGTCACTTATTTTGGGACCGAGCGAGTAGTCGAGTAGATCACAGAACTAAATAGAAACAAGA
AATAAAATT-TCAAACAAATCCCTAAACACTAGCCAGGCAACCAAACCTTTGGACATCTCAACGTGAAAAGTCCAAGCTC
CAATGTTTATGCTCATGCTCATCACTTGGTTGTGGGTCTTACGGTGGCTCCACTTGCAAATTTCTTCGTGTTAACCAAAA
AATCTGCTCAGTTCTGATATTTAAACTAGCATAACTGGACCCTGTCTCACAAGCTGTCTTCCTACATGATCTATTCGCCT
TCTAAATCATTTCACAAGCT------------------------------------------------------------
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>chrUn_974
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--------------ACGCAACACGCAG-AACATCAGCAGCAATGGCTGCCTGGAGAAGGAAGGAGACGGCCGAAGCATAC
TAC---CTCACGGGCCGATGC--CGGCGAAAGAGGAAAGAAGGTCCCCAAGGGGTACATCCCGCTGGCGCTGGTGGGCGA
GGAGGGGAACGGCGACGAGCGGGTGCTGGTGCGCATCGGCGCGCTCAAGGAGCCGTGTATGGCAGCGCTGCTGGAGATGG
CCGCGCAGCAGTTCGGCTACGGTCAGCCCGGCGTCCTCAGGATCCCCTGCGACGCACAGCAGTTCCACCAAATAGTCAGC
GCCATGTGCAGC-AAGAGCAAAGCCACATAGCCAAGTGATTGTGTTTTTTTATGACCTACTGCGCCCATCTTCCAATCTA
TGGTTTTCTCGGTTTATCGATAGGTGAATACTGAGTAGTGATATGCTTTTGGGGCCGGTTAATTTAGTTAGAG------A
AGGAACAATTCGTAGTGTTCCTCATATAGCTGATCGACAACGAATTCGGTCTTTCAGTGAGGTGGTTCTGTATATGCTGT
TTTGGTTGAACTGAACTCAATATTTTTTCACATTGATTGCTTGACTTTGGTCTTTCATCTGCGTCCGTTCGAGCTGCGCA
CCCGAGGGAGCCGCCGCCGTGCTGCGCGTCGGCTAAACATGTGTGCTCCTATCTAAACATGGGAGCGGTTGCACACGCCC
GAA----TTTGCAACTTCAATTTGCTACCAACTGAATAGTGCTTCTGTCAATTTGGTTTTTCAGAGACCTGTTCGTGTAG
TGCAAATAAACATTTGTTCAGGCAGCTATTTCAATTTTTCTCTGGTGGCGTGTTCCTGCTCCTTCTCTGTACTTCTTCGT
ACAGTGCAAATCAACAGTTGCCACTTAACGCCCAAATTGACAACTAAATTCAGTTTCAACAGATAAATCGGAATCGATAG
TAGATGCAGTTTGGGTCAAGTAG---------------------------------------------------------
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>SNPs
SSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSS---S--------S-----------SS-----S---------SSS-S----S----S--S-----
S--S--------S-----S--S-----------SSS-------S------S-SS--------S-----------------
-----SS----------------------SSS-------SS--S----SSSSSSSS--------S--SSS-SSSSSSSS-
-S---------------S-----------------S-S--------S---------------------S-----------
-------------------S------------------------------------------------------------
------------------------S-------------------------S-------S-S---------------S-SS
SS---------S------------------------------------S---------------------------S---
-----------SSSSS---------S------------------------------------------------------
----------------S---------------------------------------------------------------
--------S---S---------SSSS-------SS--S--------S------S-S--------------S---------
-----------------------S----S---------------------------------------------------
------S-------------------------------------------------------------------------
-------------S------S-----------------------------------------------------------
------------------------------------S-------------------------------------------
-----S--------------------------------------------------------------------------
---------S--S--------------S----------------------------------------------------
----------------------------S-SSS-----------------------S---------------SSSSSSS-
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------------------------------------------------------------------------------S-
-SSSSSS----S----------S--------------------------------------------------S------
--------------------S--------------------------S------SS----------------------S-
----S-----S---------------------------------------------------------------------
------------------------S--S------S-------------------------------S-------------
--------SS---------------------------S-----------S--S-----S------S---------S----
----------S------------S------------S----------------------S------------------S-
-S-------S-----------S-----------------------------S---S------------------------
-----------S-----S---SSS--------------------------------------------------------
-------------------------------------------------S--------------------------S---
--------S-----------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_136
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------------------------------------TAGTGATTTCGGCCATCGGG------------------------
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>reverse_2139
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----------------------------------------------------------GTTTCACACTCCCTCCGTCC--
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