>input_sequence_84095
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-----------------------ATGGAATCCAAGTTCTTTCGGTTCCTGAAGCTTGTCGGAGTTGGTTTCAAAGCAAGG
ACAGAGCAAGGAGGCCGCGAGTTGTTTCTGAAACTAGGCTACAGCCATGAGGTGCAGTTCACCGCTCCACCCGCCGTCCG
CGTCTTCTGCTTCAAACCCAACATAATATGCTGCACTGGCATTGACAAGCATAGAGTGCACCATTTTGCCGGAGCCGTCC
GAAGCAGTAAACCTCCGGAAGTGTACAAGGGGAAGGGCATACTGTACATTGATGAGGTCATAAAGCTGAAGCCGGGGAAG
AAGCAGCAGAAGAAGTAA--------------------------------------------------------------
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>chr4B_1_TraesCS4B01G056100
AATTCCTAGCTGCAATTGTTTGCTTCTGTTTTGCGCCTTTCCTTGAAAGAGAAATCCATTGGCGTTTACTGTTTTATATG
AAAGGTGTTGATCAGCTGTGCAT-AAAGCTAAATATTGTTATCACTGGAGAGAGGCTGGGTTATTACTCAGCAATTAGCA
TCCATGTCCGACACTGAGCAGCAAAGAAATGAAATACAGCAGGATACAAACTATGAACGTGATTTGACCCAACACCCGCT
ATTCCTGAATCAATTTCATTGGGCCTTCCAAGCCT---TGTTGAGTTGACTCATTAGTCCATTCCCCT-CCTTTCAATAG
CTCTTCCGATGTTGTAAGAAGCAAGCAAT---------------CTTATGCATAGCAACAATTTGACATTGATATCGATT
TTTTTAAGGAAAATCTTGTTTTGAGTTGTCCAAAGAGTCCAACTCACAGATGCAAACCTATTTGGAATTCCTAAATCATG
CA-TATAATTTCACAGAAAATTTGGCATCGAGATAAGTCCCAAATAGAACATGT---GTACCTTCCACTGTTTGATATAG
ACACAAACTTTGTTCTGTGGCCAGTTCTTTTCAACCGATTGTTCCCTACAACTACAAGGGAGTTCAGCCTGTAAGACTTG
CTACTTTGTGTCTAACCTAGAATGTTCCCTGTTTAGAGACTCGATATATGCCATCATGAACCCCCATCTTCAATAGTCGA
GGAACCGAGTAGGGCTTCAGAGTTTAGA-------------------GGTTATTTCAGTA--AGAGTTGTTTAATTTTTA
CCGTTCATCCTTTGTAATAAGAGATTATGTGATGAACTCATATGTATT-CTGCTGAATCTCTTGCAGTGTTCTGAAAATA
ATTTA-TCTAAATACTGTC-------TTGTATGTATATCAAATTGTCAGTACTTGCAGCATGATCATACTCC--TGTTTA
TTTACATGACTGCTCTGTTT-----TGAACCTTTTGTCCTTGTTTTGTTAAG-GTAA-GTCAGAAAGAAATATTCCATCC
TCGGACAAACTTCTCTTGTTGCAATGGAATCCAAGTTCTTTCGGTTCCTGAAGCTTGTCGGAGTTGGTTTCAAAGCAAGG
ACAGAGCAAGGAGGCCGCGAGTTGTTTCTGAAACTAGGCTACAGCCATGAGGTGCAGTTCACCGCTCCACCCGCCGTCCG
CGTCTTCTGCTTCAAACCCAACATAATATGCTGCACTGGCATTGACAAGCATAGAGTGCACCATTTTGCCGGAGCCGTCC
GAAGCAGTAAACCTCCGGAAGTGTACAAGGGGAAGGGCATACTGTACATTGATGAGGTCATAAAGCTGAAGCCGGGGAAG
AAGCAGCAGAAGAAGTAACACGTGG---GTGAGCCTCCCCATTTGACTTCTAGCCTGCTGTTAAGGCGCCGCGTAGCGTT
--TGTTGCTGCAGATTTCATGTGG-TTTTCTCTGTGCTGGGCTATTATGGCTAGCCCCGGTACCAGGCTGGACTTCGTAA
TAATACTCCG---------TATGTGAATCGTCTGATGAACATGCATACCGTTGG---------GTGGGGGTGGATCAGCG
GATTCCAACATTTTTG-TTTTGTTTTGAGCTGGCTGGATGTGACGTAT---CTT-CAATAGTTCAATGTGTTTGTTGCTG
ACACAACTCTC--CATCTTTTCTCTACACAATATTAATAGCTACTCCCTCCGTCCGGAAAATACTTCCGGAAAATACTTG
TCATCAAAATGAATAAAAGAGGATGTATCTAGATGTATTTTAGTTCTACATATATTCTTTTTTGTTCATTTT--------
----------------AATGACAAGTATTTTCGGACGGAGGGAGTA-------GCTACTATCACCCTGTTCCAAATTATA
AGATGTTTTGGATATTTCAATATGGATTATGTACGGGCTGAAATGAGTGAACAAGTACACTAAAATGCGTCTATACATCC
GATTTAGGGAAAAAAATAGAACATCTTATAATTCAAAACCTGAGGGAGTACCTTGTTATGATCTTTGTTCTTCACAAATA
ATTCATGGTTCTGGATGTATGCTTTGTGATAATGTTTTCGTTGAATCTGCTGCTTGGGGGGTGATCTTTTTTCTTTTGAA
GTCCGCCTTGGAGGATCTTGATTAAAAAAAAAAGG----AAGAGAGCTTCCCGATTAATATACTTAAATCTAGACTAAAA
CCGTCACACTTATCCACGGAGGGCAACACTGGCTGACCAAAAGGCCATCTCCAACGTCGACCCTCAAACCGCCCATGTAT
GTCCGGATCATGTTGTTCGGGCAGCAGAAGCCATCCAACACGAGCATTTACACACATTTTCTTCTGCAAACCGGAGACAA
ACGTAAGGTGGCTTTGCGAGAGTCCGGACCGCTGCCACGCCCGC
>chr4D_1
AATTCCTAGCTGCAATTGCTTGCTTCTGTTTTGCACATTTCCTTGGAAGTAAAATCCTTTGGCATTTACTG-TTTATATG
GAAGGCGTTGATCAGCTTTGCATCAAAGCTAAATATAGTTATCATTGGAGGGAGACTGGGTTAT----CATCACTCAGCA
TCCATGT-------TGAGCAGCAAAGAAGCGGAATACAACAGGAAACAAACTATGAACATGATTTGACCCAACACCCGCT
ACTCCTGAATCAACTTCATTGGGCCTTCCAAGCCTACTTGTTGAGTTGACTAATTAGTCCATTCCTCT-CCTTTCAATAG
CTCTTCCAATGTTGTAAGAAGCAAGCAATT---------------TTATGCATAGCAACAATTTGACATTGATATCAATT
TTTTTCAGTAAAATCTTGTTTTGAGTTGTCCG--GAGTCCAACTCACAGATGCAAACCTATTTGGAATTCCTAAATCACG
CA-TATAATTTCACAGAAAATTTGGCATCGAGATAAGACCCAAATAGAACATGTGTAGTACCTTCCACTGTTTGACATAG
ACACAAACTTTGTTCTGTGGTCAGTTCTTTTCAACCAATTGTTCCCTACAA------GGGAGTTCACCCTGTAAGACTTG
CTACTTTGTGTCTAACCT-------------------GACTCAATATATGGCATCGTGAACCCCCATCTTCAATAGTCGA
GGAACCGAGTAGGGCTTCAGAGTTTTGAGTCGGTG-TTTCATCCTGCGGTTATTTCAGTATAAGAGTTGTTTAATTGTTA
CAGTTCATCCTTTGCAATAAGAGATTATGTGATGAACTCATATGTATT-CTACTGAATCTCTTGCGGTGTTCTGAAAATA
ATTTA-TCTAAATACTGTC-------TTATATA-ATATCAAATTGTCAGTACTTGCAGCATGATCATACTCC--TGTTTG
TTTACATGACTGCTCAGTTTTGTGATGTACCTTTTGTCCTTGTTTTGTGAAG-GTAA-GCCGGAATCAAACAGTTCATCC
TCAGACGAACTTCCCTTGTTGCAATGGAATCCAAGTTCTTTCGGTTCCTGAAGCTTGTCGGAGTTGGTTTCAAAGCAAGG
ACAGAGCAAGGAGGCCGTGAGTTGTTTCTGAAACTTGGCTACAGCCACGAGGTGCAGTTCACCGCTCCACCCGCCGTCCG
TGTCTTCTGCTTCAAACCCAACATAATATGCTGCACTGGCATCGACAAGCACAGGGTGCACCATTTCGCGGGAGCCGTCC
GAAGCAGTAAACCTCCGGAAGTGTACAAGGGGAAGGGCATACTGTACATCGATGAGGTCATAAAGCTGAAGCCGGGGAAG
AAGCAGCAGAAGAAGTAACACATGG---GTGAGCTTCCCCATTTGACTTCTAGCCTGTTGTTAAGACGCCGCGCTGCATT
TGTGGTTCCGCAGATTTCATGTGG-TTTTCTCTGTGCCGGATTT---TGGCAGGCCCCGGTACCAGGCTGGACCTAGTAA
TAATACTCTGTATGCGACGTATGTGAAACGTCTGATGAATTTGTTGTATATGACTTGCATACCGTGGGGT-GGATCGGCG
GATTCCAACTTTTTTG-TTTTGTTTTGAGCTGGCTAGATGTGACGTAT---CTT-CAATAGTTCAATGTGTTTGTTGCTG
CCACAA--CTC--CATCTTTTCTCTACACAATATTAATAGCTA-------------------------------------
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>chr4A_36
-----------------------------------CCTTTCGTTGAAAGAGAAACCCATTGGCGTTT-CTATTTTATATG
AAAGGCGTTGCCCAGTTCTGCATCAAAGGTAAATATGGTTATCACTGGAGAGAGACTGGGTTGTCACTC-------AGCA
TCCATGTCCGACAGTGAGCAGCAAAGAAATGAAATACAACAGGAAACAAACTATGAACATGATTTCACCCAACACCCTCT
ACTCCTGAGTCAACTTCATTCGGCCTTCCAAGGCTACTTCTTGAGCTGACTA-TTAGTCCATTCCCCCCCCTTTCAATAC
CTCTTCCAATGTTGCAAGACACAAAGCAATCTTATCCTTAATTCCTTATGCATAGCAACAATTGGACATGACATCAAGTT
CCTTTCAGTAAAATCTTGTTTTGAGTTGTCCT--GAGTCCAACACACACATGCAAACTAATTTGGTTTTCCTAAATCACA
CACTATAATTTCACAGAAAATTTGGCATCAAGATGAGACCCAAATAGAACGTGTGCAGTACCTTCCGCTGTTCCACATAC
ACATAAACTTTGTTCCATGGCCAGGTCTTTTCAACCGATTGTTCCCTACAA------GGGAGTTCACCCTGTAAGACTTG
CTACTTTTTGTATAACCTGGAATATTCCCTGTTTAGAGACTCGACATATGCCATCGTGAACCGCCATATTCAATAGTCGG
GGAACCGAGTAGAGCTTCAGAGTTTAGAGTTAGCATTTTCATCCTCCAGTTATTTCAGTA--AGAGTTGTTTATTTGTGA
CCGTGCATCCTTTTTTATATGAGATTATCTGATGAATTCATATGTATTTCTACTGAATTTCTTGTCTTGGTCTGAAAATC
ATTTA-TCTAAGTAGTAAGTTCTGATCTGTATATATGTCAAATTGTCAGTACTTGCAGCATGACCATACTCC--TGTTTG
TTTACATGAGTGCTCAGTTTTGTGATGAACCTTTTGTCTTTGTTTTGTTAAG-GTAA-CCCGGAATCAAACATTTCATCC
TCAGACAAACTTCCCTTGTTGCTATGGAATCCAAGTTCTTTCAGTTCCTGAAGCTTGTCGGAGTTGGTTTCAAAGCAAGG
ACAGAGCAAGGAGGCCGCGAGTTGTTTCTGAAACTAGGTTACAGCCATGAGGTGCAGTTCACTGCTCCACCCGCCGTCCG
TGTCTTCTGCTTCAAACCCAACATAATATGCTGCACTGGCATCGACAAGCATAGAGTGCACCATTTCGCCGGAGCCGTGC
GAAGCAGTAAACCTCCGGAAGTGTACAAGGGGAAGGGCATACTGTACATCGACGAGGTCATAAAGCTGAAGCCGGGGAAG
AAGCAGCAGAAGAAGTAACACATGG---GTGAGCCTCCCCATTTGACTTCTAGCCTGTTGTTAAGGCGCCGCGACGCGTT
--TGTTGCCGCAGAATTCATGTGG-TTTTCTCTGTGCTGGGCTAGTATGGCTAGCCCCGGTACCAGGCTGGACTTTGTAA
TAATACTCCGTATGCGACGTATGTGAATCGTCTGATGAACATGCATATCGTTGG---------GTGGGGGTGGATCAGCG
GATTCCAACATTTTTG-TTTTGTTTTGAGCTGGCTGGATGTGACGTAT---CTT-CAATAGTTCAATGTGTTTGTTGCTG
ACACAACTCTC--CATCTTTTCTCTACAAAATATTA-------CTCCCTCCGTTCCTAAATATAAGTCTTTTTCGAGATT
TCAAATGAACTACCATATAAAGATGTATATAGACATATCTTAGAGTCTAGATTCACTTATTTTGCATCGCATGTAGTCAT
CTGTTGAAATCTCTAGAAAGACCTATATTTAGGAATGGAGGAAGTAATAGCTAGCTACTATCACCTTGTTCCAAATTATA
AGATGTTTTGGATATTTTAATATGGATTATGTACGGACTGAAATGAGTGAACAAGTACGCTAAAATGCGTCTATACATGC
GATTTAGGAAAAAAT-TAGAACATCTTATAATTCAAAACTTGAGGGAGTACCTTGTTATGATATTTGTTCTTCACAAATA
ATTCACGGTTCTGGATGTATGCTTTGTGATAGTGTTTTTGTTGAATCTGCTGCTTGGGGGTGA-----TTTTCTTTTTAT
GTCGGCCTTGAAGGATCTTGATTAATTCAGAAAAAGGGAAAGAGAGCTGCCCGATTAATATACTTAAATCTAGACTAAAA
CTGTCACAATTATCCACGGAGGGCAACACTCGCTGACCAAAAGGCCATCTTCAACGGCGACCTTCAAACCGTCCATGTAT
ATCCAAACCGCGTTGTCTGGATAGCGGAAGCCATTTAACGCGGGCTTGTACACGCATTTTCTTCTGCAAAC-GGAGACAA
CCATGAGG-GGCTTTGCGAGAGTTCGGACTGCTGCCATGCCCGC
>chr6D_727
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-------------------------------------------------TTATTTCAGTA--AGAGTTTGAAGCA---TA
CATTTCATTCTTTGTGAGATGAAATTACGGGATATACTCGTGTATATT-GTACCGAATCTCTTGCAATGCTCTGAAAATA
GTCGA-TTTAACTATGGTC-------TTGTGTATATATCGAATTCTCAATACTTGCAGCATGATGGTACTCCCCTGTTTC
ATTACATTAGTGCTCAATTTTCTGATGAACCTTTTGTCCTTGTTTTGTCAAAAGTAAAGTCGGAAACAAATATTTCATCC
TCGGACGGACTTCTCATCTCGCAATGGAAGCCAAGTTCTTTCGGTTCCTGAAGCTTGTTGGAGTTGGCTTCAAAGCCAGG
ACAGAGCGTGAAGGCCGCGAGTTGTTTTTGAAACTAGGCTACAGCCATGAGGTGCAGTTCACGGCTCCACCTGCCGTCCG
CGTCTTCTGCTTCAAGCCCAACATAATATGCTGTACTGGCATTGACAAGCATAGAGTGCACCATTTCGCTGGAGCTGTCC
GATGCAGTAAGCCTCCAGAAGTGTACAAGGGGAAGGGCATACTGTACATCGACGAGGTCATAAAGCTGAAGCCGGGGAAG
AAGCAGCAGAAGAAGTAACACATGGTGGGTAAACATCCCCATTCGACTTCTAGCTTGTT---AAGACGTCGCATCGCATT
TGTGGTGCCGCGGATTTCACGCGG-TTTTCTC-GTGCCGGATTA---TGCCTAGCCCCAGTACCGGGATGGATTTCGTAA
TAATACTCCGTATGCTATGT----GAGTTATCTGGTGAGCATGTGCTGTATGACGTGCATACCGTGGGGGCGGATCAGCA
CATTCAAACATTTGTGTTTTTGTTTTGGGCTGGCTAGATGCATGTAACCTACTT-CAATAGCCTAATGTGTTTGTTGATG
TCACTACTTTCTTCATATTTTCTCTACACAATATTA--------------------------------------------
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>chr6B_759
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---TTCATTCTTTGTGAGATGAAATTACGGGATGTACTCGTGTATATT-GTACCGAATCTCTTGCAATGCTCTGAAAATA
GTGGA-TTTAACTATGGTC-------TTGTGTATATATCAAATTCTCAGTACTTGCAGCATGAGTGTACTCC--TGTTTG
TTTACATTAGTGTTCAA-TTTCTGATGAACCTTTTGTCCTCGTTTTGTGAAG-GTAAAGTCGGAAACAAATATTTCATCC
TTGGAAGGACTTCTCATCTTGCAATGGAAGCCAAGTTCTTTCGGTTTCTGAAGCTTGTTGGAGTTGGCTTCAAAGCAAGG
ACCGAGCGTGAAGGCCGCGAGTTGTTTCTGAAACTGGGCTACAGTCATGAGGTGCAGTTCACCGCTCCACCTGCCGTCCG
CGTCTTCTGCTTCAAACCCAACATAATATGCTGTACTGGCATTGACAAGCATAGAGTGCACCATTTTGCTGGAGCTGTCC
GATGCAGCAAACCTCCAGAAGTGTACAAAGGGAAGGGCATACTGTACATCGACGAGGTCATAAAGCTGAAACCGGGGAAG
AAGCAGCAGAAGAAGTAACACATGG---GT-AACCTCCCCATTTGACTTCTAGCTTGTT---TAGATACCGCATCACATT
TG---TGGTGCCGATTTCATGTGG-TTTTCTC-GTGCCGGATTG---TGGCTAGCCCCAGTGCCATGCTGGACTTCGTAA
TAATACTCTGTATGCTATGT----GAATCATCTGGTGAGCATGTACTGTATGACTTGCATACCTTGGGGGCGGATCAGCA
CATTCAAACATTTGTGTTTTTGTTTTGGGCTGGCTAGATGCATGTAACCTACTTTCAATAGCCCAGTGTGTTTGTTGATG
TCACTACTTTCTTCATATTTTCTCTATACAATATTA--------------------------------------------
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>chr6A_779
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-----------------------ATTACGGGATGTACTCGTGTATATT-GTACCGAATTTCTTGCAATGTTCTGAAAACA
ACCTATTTTAACTACGGTC-------CTGTGTATACATCGAATTCTCAATACTTGCAGCATGATGGTACTCC--TGTTTC
TTTACATTAGTGCTCAATTTTCTGATGAACCTTTTGTCCTTGTTTTGTCAAG-GTCAAGCCGGAAACAAATATTTCATCC
TCGTTCGGACTTCTCATCTCGCAATGGAAGCCAAGTTCTTTCGGTTCCTGAAGCTTGTTGGAGTTGGCTTCAAAGCCAGG
ACAGAGCGCGAAGGCCGCGAGTTGTTTCTGAAACTGGGCTACAGCCATGAGGTGCAGTTCACCGCTCCACCTGCCGTCCG
CGTCTTCTGCTTCAAGCCCAACATAATATGCTGTACTGGCATTGACAAGCATAGAGTGCACCATTTCGCTGGAGCTGTCC
GATGCAGTAAACCTCCAGAAGTGTACAAGGGGAAGGGCATACTGTACATCGACGAGGTCATAAAGCTGAAGCCGGGGAAG
AAACAGCAGAAGAAGTAACACATGG---GTAAACCTCCCCATTTGACTTCTAGCTTGTT---TAGACGCCCCATCACATT
TGTGGTGCCGCGGATTTCATGTGGTTTTTCTC-GTGCCGGGTTT---TGGCTAGCCCTAGTACCATGCTGGACTTCGTAA
TAATACTCTGTATGCTATGG----GAATCATCTGGTGAGCATGTACTGTATGACTTGCATACCGTGGGGGCGGATCAGCA
CATTTGAACATTTGTGTTTTTGTTTTGGGCTGGCTAGATGCATGTAAC-----------AGCCCAATGTGTTTGTTGATG
TCACTACTTTCTTCATATTTTCTCTACACAATATTA--------------------------------------------
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>SNPs
------------------S---------------S---------------------------------------------
-----S-----------S------------------S-----------------S---------S-----S--S-S----
-------------S------------------------S-----S-------------S---------------------
-S-----------S-------------------------------------S----------------------------
-------S--------------------------------------------------------------------S---
-----S--S----------------------SSS--------------------------------------------S-
-------------------------------------S-------------------------------------S----
---------------------------------------------------SSSSSS---------S-------------
------------------S----S-------------------------------S------------------------
----------------------------------------------------------------------------S---
---------------------------------------------------S----------------------------
--------------------------------S----------------------------------------------S
---------------S---------------------------------------------S----S-------S-----
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-------------------------------------------------S------------------------------
---------------------S-----------------------------------S----------------S-----
--------------------------------------------S-----------------------------------
-----------------------------------------------S--------------------------------
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-----------------------------------------------------S-SS---SSSSSSS-SSSSSSS-SS-S
---SSSS--SS-SS-S-SS-S-------S----SS---S----SSSSSSSSS-SSSS-S-----SSSSSSS---------
------------------S---SSS-----SS-S-S-----S-----------------------S--------------
-----------------S------------------S---------------------S-------------------S-
--------S-----SS-----------------------S----------------------S-----------------
-----S-------------------------S------S---------------------SSSSSSSS---------S-S
---S------S--------------SSS-S---SS-------------S-------------------------------
-S------S---------------------S-------------------S-----S-----S--------S--------
S---SS-S-SS-----SS--SS---S--------SS---S--S--S-S-----S-----------------S--------
S-S-S---S--------------S-----S-------S------
>forward_242
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--------------------------------------------------------------TTTGACCCAACACCCGCT
AT------------------------------------------------------------------------------
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>reverse_2326
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-----GATCATGTTGTTCGGGCAGC-------------------------------------------------------
--------------------------------------------
