>input_sequence_84077
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-----------------------------------------ATGGTCGCCGCCCCCTCCCCCGCCCTAACCGCCGCGGAC
GCGAGGCAGGCCGCGGCGAGGAAGAAGGAGGAGGACGACGAGGAGGTCGTCTGCTTCATCTGCTTCGACGGTGGAGACCT
CGTCGTCTGCGATTGGAGGTGCGACGCCGCAGTGCGCGACTTCTTCCACGCCTGGATGGTCATTGAGCGCGCCCCTCCTG
ATTGCAGTCAGTGCCGCCGCCGTCTCCAAGCTGCAGAGTCCCGTTCCTTTCAGCCCGTGCGTTTCCTCAGCGTGAGATCG
ATCGGGATGTCCCTAATCTACTGTGTGTACTTTTAA--------------------------------------------
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>chr2D_1_TraesCS2D01G343600
ACTTGATTTTTCATCTTGATTCCTCTTAATTTTTACTACTAGTTTGTATCGATTTGTGGCTAAAAAAATTGGACCAAATC
AGAGGACACGGCGGGCGCTCTTGGTCGGACTTCGGGGACTGGACCGCCAACGCGTCACCTGACGCAGAAGGCTGGGCCGG
TGAGGTGCAGGACCCCGGGGAATAGCTGTCGGAAGTGGACATCGTCATCTCGCTGCAGCGGAGCTGCTCCACCTCGCCCT
ACTGTGATCTTGG-GACGACGTCCTGAACGGCGTCAGCCCCAAATACTCAGTGAGGAGGTCGAGAACGACATGGGGTTTC
CATTCCCGGCGCTCGACGAGGACGACATCGACGGCGAGGCAGGGCAGGCATGATGTTTCAGACTTCTGACGAAACTGAAA
CTGCACTGATGCAGGCCGGGGCGGACAATTTGGGGTACACCGCTGGGGCATCGTCCAAAAATTACCTCCGACGCAAAACG
TCCCGCCTGTGACCCATCCGGACAAAAACGGACGGTTTGGGTAGTCCGGATGGGTCTGGCCGGTGCGGATGCCCTAACCA
TCTATCCAAGGTTACTTTGCAGAATTATTCACGTAAGTTATGCAAATTGACACAATATAATTCAGGGTATTTTCAATTAA
ACCTAGGTCAAATGACGAAATTGCACCCACTGAATGTGGGCCGGCTGGGTCGAAGCAACCGGTTCGACCGAGCCGGTCAA
CCCAGTCCACGCCCCGCGTCGTCCTCCCCTTCTCCTCTTCCTCGCTCTTGCGACCGAAATCGCCGCCGCCGTCGCCGTCG
CCGCTCAACCCCGGCCGCCTCCGGTGGTTTCTGCCGCCGTCGCCTAGCGCGAACGACGCACCTAGCCGCCCTTTATCATC
TCCTCCTCTTAGATTTTCCGGGCGCCTCCTCGTGCGGCTGTGCCCTACCCCGCATGGGAGCTAGGGTTTGCGCCCCTCGT
CGGAGTTGAACTCCGGCGGCCGTCCTGGTGCTCGGGTGGTCATGGTCGCCGCCCCCTCCCCCGCCCTAACCGCCGCGGAC
GCGAGGCAGGCCGCGGCGAGGAAGAAGGAGGAGGACGACGAGGAGGTCGTCTGCTTCATCTGCTTCGACGGTGGAGACCT
CGTCGTCTGCGATTGGAGGTGCGACGCCGCAGTGCGCGACTTCTTCCACGCCTGGATGGTCATTGAGCGCGCCCCTCCTG
ATTGCAGTCAGTGCCGCCGCCGTCTCCAAGCTGCAGAGTCCCGTTCCTTTCAGCCCGTGCGTTTCCTCAGCGTGAGATCG
ATCGGGATGTCCCTAATCTACTGTGTGTACTTTTAACTGAATTTCCGACAGTGCGTTTGCTCAGCGTGAGATGGATCATC
GAGGTTAGTGTGCCAGCACCGCACTCTGCTCAGCGTGAGATTTCCGACAGTTAACTAATTAGTCTTATGAGCTTTATTAG
TGCACTACATGGTTACATCGCTCTGCAATTCTGCATTTCTTTACTTCTGATATCCTCGCTTTTCTCCATACTTGTTTAGC
GGTATATTTAACTGTAAATGATAACAATATTCTGTGCATTTATGCACTTCTTTAGTAGGCAAGAACGCTAGGTAAAGAAA
TGATGTAAATCTCCTTCGTCTATTTATACAAGGACATGGTAACCGCCCCAGTTTCTTTATTAGTGAAACCAAACATCTGG
CTCAATACATCAATCTATGGGCATAGACATTTGTAGGGGTTTACACCTTATGTGCTATTCTTTTGCAGATCGGCAGAAAT
AGCCTTAGCCAATTCCAAATAATGGAAGTTCAAAACAGGCAAACTAAAACGTTTGCTGCTATATGATACACACTGAATAC
ACCCAGATAGCCTTCTTTTGTTTGTGTTGTGATCTGCCGATTCCTGTTTTAGCAATCCTTATTTGTTGATTCAAAGTCAC
AGAGTTATTGAAGTTAGGTTTCTCGTAGCTACACGGGCAGGCTGCTTAGCATTGCACTAACTAGTTTGGTGGTAGAAAAG
TTTCTGTTCCAGTTCTTCCCTATGTTGGTCTTCACTTGCTATTTTCAACAGTCACATGAACATAATGTATTCTTTTTTTA
TTCAGTTGCCACACATGCTGCCATCTCAAAAAGCATTTTATGCTGCTGTATCTTCCCTTGGCATCTACAGCAAAGCTGTT
TACGATGGAAAGGGGCTATTTAGCGCCGCTCGTGTTTGGTGGTAAGTTTCTTTATTTTTTTCCTTCCACGGAACTAATTA
AAACAAGTTAGAGCAGAATTATGGCAGAAACAAGAGACTATTGTTCTTATATGTTCTTAAATTATTAGAGTTTCCT
>chr2D_1
ACTTGATTTTTCATCTTGATTCCTCTTAATTTT-ACTACTAGTTTGTATCGATTTGTGGCTACAAAAATTGGACCAAATC
AGAGGACACGGCGGGCGCTCTTGGTCGGACTTCGGGGACTGGACCGCCAACGCGTCACCTGACGCAGAAGGCTGGGCCCG
CGAGGTGCAGGACCCCGGGGAGTAGCTGTCGGAAGTGGACATCGTCATCTCGCTGCAGCGGAGCTGCTCCACCTCGCCCT
ACTGTGATCTTGGCGACGACGTCCTGAACGGCGTCAGCCCCAAATACTCAGCGAGGAGGTCGAGAACGACATGGGGTTTC
CATTCCCGGCGCTCGATGAGGACGACATCGACGGCGAGGCAGGGCAGGCATGATGTTTCGGACTTCTGACGAAACTGAAA
CTGCACTGATGCAGGCCGGGGCGGACAATTTGGGGTACACCGCTGGGGCATCGACCAAAAATTACCTCCGACGCAAAACG
TCCGGCCCGTGACCCATCCGGACAAAAACGGACGGTTTGGGTAGTCCGGATGGGGGTGGCCGGTGCGGATGCCCTAACCA
TCTATCCAAGGTTACTTTGCAGAATTATTCACGTAAGTTATGCAAATTGACACAATATAATTCAGGGTATTTTCAATTAA
ACCTAGGTCAAATGACGAAATTGCACCCACTGAATGTGGGCCGGCTGGGTCGAAGCAACCGGTTCGACCGAGCCGGTCAA
CCCAGTCCACGCCCCGCGTCGTCCTCCCCTTCTCCTCTTCCTCGCTCTTGCGACCGAAATCGCCGCCGCCGC------CG
CCGCTCAACCCCGGCCGCCTCCGGTGGTTTCTGCCGCCGTCGCCTAGCGCGAACGACGCACCTAGCCGCCCTTTATCACC
TCCTCCTCTTAGATTTTCCGGGCGCCTCCTCGTGCGGCTGTGCCCTACTCCGCATGGGAGCTAGGGTTTGCGCCCCTCGT
CGGAGTTGAACTCCGGCGGCCGTCCTGGTGCTCGGGTGGTCATGGTCGCCGCCCCCTCCCCCGCCCTAACCGCCGCGGAC
GCGAGGCAGGCCGCGGCGAGGAAGAAGGAGGACGACGACGAGGAGGTCGTCTGCTTCATCTGCTTCGACGGTGGAGACCT
CGTCGTCTGCGATTGGAGGTGCGACGCCGCAGTGCGCGACTTCT-------------------------------TCCTG
ATTGCAGTCAGTGCCGCCGCCGTCTCCAAGCTGCAGAGTCCCGTTCCTTTCCGCCCGTGCGTTTCCTCAGCGTGAGATCG
ATCGGGATGTCCCTAATCTACTGTGTGTACTTTTAACTGAATTTCCGACAGTGCGTTTGCTCAGCGTGAGATGGATCATC
GAGGTTAGTGTGCCAGCACCGCACTCTGCTCAGCGTGAGATTTCCGACAGTTAACTAATTAGTCTTATGAGCTTTATTAG
TGCACTACATGGTTACATCGCTCTGCAATTCTGCATTTCTTTACTTCTGATATCCTCGCTTTTCTCCATACTTGTTTAGC
GGTATATTTAACTGTAAATGATAACAATATTCTGTGCATTTATGCACTTCTTTAGTAGGCAAGAACGCTAGGTAAAGAAA
TGATGTAAATCTCCTTCGTCTATTTATACAAGGACATGGTAACCGCCCCAGTTTCTTTATTAGTGAAACCAAACATCTGG
CTCAATACATCAATCTATGGGCATAGACATTTGTAGGGGTTTACACCTTATGTGCTATTCTTTTGCAGATCGGCAGAAAT
AGCCTTAGCCAATTCCAAATAATGAAAGTTCAAAACAGGCAAACTAAAACGTTTGCTGCTATATGATACACACTGAATAC
ACCCAGATAGCCTTCTTTTGTTTGTGTTGTGATCTGCCGATTCCTGTTTTAGCAATCCTTATTTGTTGATTCAAAGTCAC
AGAGTTATTGAAGTTAGGTTTCTCGTAGCTACACGGGCAGGCTGCTTAGCATTGCACTAACTAGTTTGGTGGTAGAAAAG
TTTCTGTTCCAGTTCTTCCCTATGTTGGTCTTCACTTGCTATTTTCAACAGCCACATGAACTTAATGTATTCTTTTTTTA
TTCAGTTGCCACACGTGCTGCCATCTGAAAAAGCATTTTATGCTGCTGTATCTTCCCTTGGCATCTACAGCAAAGATGTT
TACGATGGAAAGGGGCTATTTAGCGCCGCTTGTGTTTGGTGGTAAGTTTCTTTATTTTTTTCCTTCCACGGAACTAATTA
AAACAAGTTAGAGCAGAATTATGGCAGAAACAAGAGACTATTGTTGTTATATGTTCTTAAATTATTAGAGTTTCCT
>chr2B_1
ACTTGATTTTTCATCTTGATTCCTCTTAATTTTTACTACTAGTTTGTATCGATTTGTGGCTACAAAAATTGGACCAAATC
AGAGGACACGGCGGGCGCTCTTGGTCGGACTTCGGGGACTGGACCGCCACCGCGTCACCTGACGCGGAAGGCTGGGCCGG
CGAGGTGCAGGACCCTGGGGAATAGCTGTCG-AAGTGGACATCGTCATCTCGCCGCAGCGGAGCTGCTCCACCTCACCCT
ACTGTGATCTTGGCGACGACGTCCTGAACGGCGTCAGCCCCAAATACTCAGCGAGGAGGTCGAGAACGACATGGGGTTTC
CATTCCCGGCGCTCGACGAGGACGACATCGACGGCGAGGCAGGGCAGGCATGATGTTTCAGACTTCTGACGAAACTGAAA
CTGCACTGATGCAGGCCGGGGCGGACAATTTGGGATACACCGCTGGGGCATCGACCAAAAATTACCTCCGACGCAAAACG
TCCGGCCCGTGACCCATCCGGACAAAATCGGACGGTTTGGGTAGTCCGGATGGGTCTGGCCGGTGCGGATGCCCTAACCA
TCTATCCAAG-TTACTTTGCAGAATTATTCACGTAAGCTATGCAAATTGACACAATATAATTCAGGGTATTTTCAATTAA
ACCTAGGTCAAATGACGAAATTGCACCCACTGAATGTGGGCCGGCTGGGTCGAAGCAACCGGTTCGACCGAGCCGGTCAA
CCCAGTCCACGCCCCGCGTCGTCCTCCCCTTCTC---TTCCTCGCTCTTGCGACCGAAATCGCCGCCGCCGT------CG
CCGCCCAACCCCGGCCGCCTCCGGTGGTTTCTGCCGCCGTCGCCTAGCGCGAACGACGCACCTAGCCGCACTTTATCATC
TCCTCCTCTTAGATTTTCCGGGCGCCTCCTCGTGCGGCTGTGCCCTACCCCGCATGGGAGCTAGGGTTTGCGCCCCTCGT
CGGAGTTGAACTCCGGCGGCCGTCCTGGTGCTCGGGTGGTCATGGTCGCCGCCCCCGCCCCCGCCCTAACCGCCGCGGAC
GCGAGGCAGGCCGCGGCGAGGAAGGAGGAGGAGGACGACGAGGAGGTCGTCTGCTTCATCTGCTTCGACGGGGGAGACCT
CGTCGTCTGCGATTGGAGGTGCGACGCCGCAGTGCGCGACTTCTTCCACGCCTGGATGGTCATTGAGCGCGCCCCTCCTG
ATTGCAGTCAGTGCCGCCGCCGTCTCCAAGCTGCAGAGTCCCGTTCCTTTCCGCCCGTGCGTTTCCTCAGCGTGAGATCG
ATCGGGATGTCCCTAATCTACTGTGTGTACTTTTAACTGAATTTCCGACAGTGCGTTTGCTCAGCGTGAGATGGATCATC
GCGGTTAGTGTGCCAGCACCGCACTCTGCTCAGCATGAGATTTCCGACAGTTAACTAATTAGTCTTATGAGCTTTATTAG
TGCACTACATGGTTACATCGCTCTGCAATTCTGCATTTCTTTACTTCTGATATCCTCGCTTTTCTCCATACTTGTTTAGC
GGTATATTTAACTGTAAATGATAACAATATTCTGTGCATTTATGCACTTCTTTAGTAGGCAAGAACGCTAGGTAAAGAAA
TGATGTAAATCTCCTTCGTCTATTTATACAAGGACATGGTAACCGCCCCAGTTTCTTTATTAGTGAAACCAAACATCTGG
CTCAATACATCAATCTATGGGCATAGACATTTGTAGGGGTTTACACCTTATGTGCTATTCTTTTGCAGATCGGCAGAAAT
AGCCTTAGCCAATTCCAAATAATGAAAGTTCAAAACAGGCAAACTAAAACGTTTGCTGCTATATGATACACACTGAATAC
ACCCAGATAGCCTTCTTTTGTTTGTGTTGTGATCTGCCGATTCCTGTTTTAGCAATCCTTATTTGTTGATTCAAAGTCAC
AGAGTTATTGAAGTTAGGTTTCTCGTAGCTACACGGGCAGGCTGCTTAGCATTGCACTAACTAGTTTGGTGGTAGAAAAG
TTTCTGTTCCAGTTCTTCCCTATGTTGGTCTTCACTTGCTATTTTCAACAGTCACATGAACTTAATGTATTCTTTTTTTA
TTCAGTTGCCACACATGCTGCCATCTGAAAAAGCATTTTATGCTGCTGTATCTTCCCTTGGCATCTACAGCAAAGATGTT
TACGATGGGAAGGGGCTATTTAGCGCCGCTCGTGTTTGGTGGTAAGTTTCTTTATTTTTTTCCTTCCACGGAACTAATTA
AAACAAGTTAGAGCAGAATTATGGCAGAAACAAGAGACTATTGTTCTTATATGTTCTTAAATTATTAGAGTTTCCT
>chr2A_1
ACTTGATTTTTCATCTTGATTCCTCTTAATTTTTACTACTAGTTTGTATCGATTTGTGGCTACAAAAATTGGACCAAATC
AGAGGACTCGGCGGGCGCTCTTGGTCGGACTTCGGGGACTGGACCGCCACCGAGTCACCTGACGCGGAAGGCTGGGCCGG
CGAGGTGCAGGACCCCGGGGAATAGCTGTCGGAAGTGGACATCGTCATCTCGCTGCAGCGGAGCTGCTCCACCTCGCCCT
ACTGTGATCTTGGCGACGACGTCCTGAACGGCGTCAGCCCCAAATACTCAGCGAGGAGGTCGAGAACGACATGGGGTTTC
CATTCCCGGCGCTCGACGAGGACGACATCGACGGCGAGGCAGGGCAGGCATGATGTTTCAGACTTCTGACGAAACTGAAA
CTGCACTGATGCAGGCCGGGGCGGACAATTTGGGATACACCGCTGGAGCATCGATCAAAAATTACCACCGACGCAAAACG
TCCAACCCGCGATCCATCCGGACAAAAACGGACGGTTTGGGTAGTTCGGATGGGTCTGGCCGGTGCGGATGCCCTAACCA
TCTATCCAAGGTTACTTTGCAGAATTATTCACGTAAGTTATGCAAGTTGACACAATATAATTCAGGGTATTTTCAATTAA
ACCTAGGTCAAATGACGAAATTGCACCCACTGAATGTGGGCCGGCTGGGTCGAAGCAACCGGTTCGACCGAGCCGGTCAA
CCCAGTCCACGCCCCGCGTCGTCCTCCCCTTCTCCTCTTCCTCGCTCTTGCGACCGAAATCGCCGCCGCCGT------CG
CCGCTCAACCCCGGCCGCCTCCGGTGGTTTCTGCCGCCGTCGCCTAGCGCGAACGACGCACCTAGCCGCCCTTTATCATC
TCCTCCTCTTAGATTTTCGGGGCGCCTCCTCGTGCGGCTGTGCCCTACCCCGCATGGGAGCTAGGGTTTGCGCCCCTCGT
CGGAGTTGAACTCCGGCGGCCGTCCTGGTGCTCGGGTGGTCATGGTCGCCGCCCCCGCCCCCGCCCTAACCGCCGCGGAC
GCGAGGCAGGCCGCGGCGAGGAAGAAGGAGGAGGACGACGAGGAGGTCGTCTGCTTCATCTGCTTCGACGGGGGAGACCT
CGTCGTCTGCGATTGGAGGTGCGACGCCGCAGTGCGCGACTTCTTTCACGCCTGGATGGTCATTGAGCGCGCCCCTCCTG
ATTGCAGTCAGTGCCGCCGCCGTCTCCAAGCTGCAGAGTCCCGTTCCTTTCCGCCCGTGCGTTTCCTCAGCGTGAGATCG
ATCGGGATGTCCCTAATCTACTGTGTGTACTTTTAACTGAATTTCCGACAGTGCGTTTGCTCAGCGTGAGATGGATCATC
GAGGTTAGTGTGCCAGCACCGCACTCTGCTCAGCGTGAGATTTCCGACAGTTAACTAATTAGTCTTATGAGCTTTATTAG
TGCACTACATGGTTACATCGCTCTGCAATTCTGCATTTCTTTACTTCTGATATCCTCGCTTTTCTCCATACTTGTTTAGC
GGTATATTTAACTGTAAATGATAACAATATTCTGTGCATTTATGCACTTCTTTAGTAGGCAAGAACGCTAGGTAAAGAAA
TGATGTAAACCTCCTTCGTCTATTTATACAAGGACATGGTAACCGCCCCAGTTTCTTTATTAGTGAAACCAAACATCTGG
CTCAATACAACAATCTATGGGCATGGACATTTGTAGGGGTTTACACCTTATGTGCTATTCTTTTGCAGATCGGCAGAAAT
AGCCTTAGCCAATTCCAAATAATGAAAGTTCAAAACAGGCAAACTAAAACGTTTGCTGTTATATGATACACACTGAATAC
ACCCAGATAGCCTTCTTTTGTTTGTGTTGTGATCTGCCGATTCCTGTTTTAGCAATCCTTATTTGTTGATTCAAAGTCAC
AGAGTTATTGAAGTTAGGTTTCTCGTAGCTACACGGGCAGGCTGCTTAGCATTGCACTAACTAGTTTGGTGGTAGAAAAG
TTTCTGTTCCAGTTCTTCCCTATGTTGGTCTTCACTTGCTATTTTCAACAGTCACATGAACTTAATGTATTCTTTTTTTA
TTCAGTTGCCACACATGCTGCCATTTGAAAAAGCATTTTATGCTGCTGTATCTTCCCTTGGCATCTACAGCAAAGATGTT
TACGATGGAAAGGGGCTATTTAGCGCCGCTCGTGTTTGGTGGTAAGTTTCTTTATTTTTTTCCTTCCACGGAACTAATTA
AAACAAGTTAGAGCAGAATTATGGCAGAAACAAGAGACTATTGTTCTTATATGTTCTTAAATTATTAGAGTTTCCT
>SNPs
--------------------------------------------------------------S-----------------
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S-------------------------------------------------------------------------------
---------------------------------------------------S----------------------------
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-----------------------------------------------------S--------------------------
---S---S------------------------------------------------------------------------
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------------------------------------------------------------------------SSSSSS--
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------------------------S-------------------------------------------------------
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-------------------------------------------------------------S------------------
--------------------------S------------------------------------------------S----
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>forward_292
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-------------------------------CGTCAGCCCCAAATACTCAGT----------------------------
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>reverse_2156
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---------------------------------------------------------------------------CTGTT
TACGATGGAAAGGGGC----------------------------------------------------------------
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