>input_sequence_84073
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------------------------------------------------------------------------------AT
GACGGCTCACGATATCGAGAAGGGATCGGAGGACGCCGCCGCCGGCAACGACGTCAGGAGCGCGTACGCCGAGCTGCTGC
GCAGGCGCAGGTTCCTGTGGTGGCTGACTCTGCTCGAAGTCGTCCTCATCTTTGGCATCGGAGCGCTCATGGCGTGCATC
GAGCCGTCCACCGCCGGGCCGAAGGTGTACCTCGCCTCCCGCGTCGTCGGGTATGCCGGCCATGTCGTCGCCGTCTGCTG
GGGACTCTTCATCGTTTACCAGTGGACCCTGTCTGCTAAAGAGCACCAGAGGATCCTAGACTCTATCAAGTAG-------
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>chr2B_1_TraesCS2B01G009400
AGCTTTTTCCCACAATGCAAAA-TCCTACTGCCACCACCAGTCCCATTCTTCTTCTTCATCTACATTACAACAAAACAAG
GAAGAAATCAGCATCTACAAATTGAATCAACTACTTGCAATAATTAGGTAAGCAAAATCGAATCAACTAAAAAACTGAAA
CTGTTTTCTTTAGGACTGTACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN---------
-----------------------------------GGGAAGTGGGGATTGGGGAACGGGCGAGTCAGCGAGAGAAGGGAG
CGAGCGCCGAGCGGTGGGCGCGTGCGGTGGCAGCTATGTATTATTTTTTTTTTTGCGCTCAATAATGGGTATACATACTA
ATACCCACGAATACCCTCAGCGCCGCCGATGTCACGAGGCTCCATTTCTAGAGAGCTTATATTAACCTAAGAGATTAGCT
AATCTAGCCAATACTACTCCTGCGCGGTGACTGTCTCCTAGTCCGAGCCGGCTAAACATCACGTATCGTGATTATCTCCA
ATAGTGGCACGAAGAGCT-------------------------------------------------------------C
ATGGCGTTCATGAATCCAATCAGGCCGAGACGTGTATGTTTTTTTTTTTCGAATAGGCCGAGACGTGTACGTTCATGGCA
TTATGGTACGCGGTTTCAGAGACCGACACGTATAGTACAACAGTAGAAAAAAAGGG------------GTCGAGTTGCCA
ACATTATATACTCGTCATCAATCATCAATCAATCTAATAATTAGATTAGAGACAACGAAACCACAGATCGATCGATCGAT
GACGGCTCACGATATCGAGAAGGGATCGGAGGACGCCGCCGCCGGCAACGACGTCAGGAGCGCGTACGCCGAGCTGCTGC
GCAGGCGCAGGTTCCTGTGGTGGCTGACTCTGCTCGAAGTCGTCCTCATCTTTGGCATCGGAGCGCTCATGGCGTGCATC
GAGCCGTCCACCGCCGGGCCGAAGGTGTACCTCGCCTCCCGCGTCGTCGGGTATGCCGGCCATGTCGTCGCCGTCTGCTG
GGGACTCTTCATCGTTTACCAGTGGACCCTGTCTGCTAAAGAGCACCAGAGGATCCTAGACTCTATCAAGTAGTAAATGT
GTATTCTACTACTACTCTCGTGTTGATTGTCTT-GATCACGCATGTACATGTGGTATGTGGATGGTACTCTATGACGATA
CTAGCTAAACGTCCGTTGCCACGGAAAAATAAGTTTAGTTATGAAAATATTTGATTCTTAAAAGTATTAAGAAACTGTAT
GTCTTATATTGTCTTGTACTTCACCTCCATTTTTTTTTTGCAATTTATGCTCTTTAATTTGGATTATTTGTATGGATAAA
TATTGTATTGTCCTCCTCTTTTCCGCGTCTTCGACCTCATCACGTGACGCACTTTGTGGATTGTCTACCCTTCCACTCAA
AACAACTCATCCATCTATCTCTTATTAAGTCTCATCTAGGCTAAACTAAGTCATAGTTTGTGGTAGTCAATAAAACTGCC
CCTTTTTATTTCTTTGCCAATTGAGGAAATAGTCACAATACAAAAAAAAAATCAACTTTGTTTACTCAATGATAGGAGTT
ACAGGGAGCAAACAATAGAGCTACCCTCATTTAAATATTGGGTTGGGATGCCTTTAATTTCTCTTGCACTGCAGAGTATA
TGATTTTAAACATTATCCCGTGGAAATTTGGGCTCTCAGTATATAAAACAAGAATTCAATGTCATCGCCCCTCTCAACTC
TGTATGCAATTGATGCCCATCCCAAATGCTTGATTACGCATCTTTTTTGATAAAGGATGAATTTTATTGGCTCAAAATAA
AGTATTAATTGGATACAAAACACAATGAACACATTCGGTTTTTGCATAGCTAAGATGCACACCACCAACATCAACATGCA
CAAACGGAAAACACAATGCAAATAGCAAAATCATATAAGAACTGAAAAAAACCCCGAAGCAATCAATCCACGATCAACAA
ACTACAACAACGATCATATCCGCACAACCATCTCATGACACCACATGAATGATGAGCTCCTTCAACAGCAGCGCCTTCAG
AAAGAGAGTGACCCTCAAGCATCGTTGTCACCGA
>chr1B_1
AGCTTTTTCCCACAATGCAAAAATCCTACTGCCACCACCAGTCTCATTCTTCTTCTTCATCTACATTACAACAAAATAAG
GAAGAAATCAGCATCTACAAATTAAATCAACTACTTGCAATAATTAGGTAAGAAAAATCGAATCAACTAAAAAACTGAAA
AAAATTTCTTTAGGACTGTACCTGACAGCGGGGGGTGGGGGGGCGAGAAACTGCCGCTGGTCCCTGGGCCGGGCGCTGCC
GCGGTGGGCGACGGGGCTGGGGCGGGGCGGCCGGCGAGCGCCAGGGCGGGGCGGCGATGCAGTCCGGTCAGCGCAGCCCC
CGGTCGACCTTGGTGAAGATTACAGGGGCCCTGGCGGCGGACCTGAGCGGCTGAGGGCGGGGCTAAACGGCTGAGGGATG
AGGGCAGGGCGGCCAGGCCGGGCGACGACCGGTGACTCGGTGAGCGTGAGCGGGGGTCGCTGGGCCTGGGCGGCTAGGGT
TGTGTGCCGGTGTCCTTGGTCCAGCGCTCGAGCAGGGGAAGTGGGGATTGGGGAACGGGCGAGTCAGCGAGAGAAGGGAG
CGAGTGCCGAGCAGTGGGCGCGTGCGGTGGCAGCTATGTA-------TTTTTTTACGCTCAATAATGGGTATTCATACGA
ATACCCACGAATACCCTTAGCGTCGCCGATG-------------------------------------------------
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>chr2B_687
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-----------TACTACTCCTACGCGGTGACTGTCTCCTAGTCCGAGCCGGCTAAACATCACGTATCGTGATTATCTCCA
ACAGTGGCACGACGGGTCTGGGATTAATTGGGCTGACCGACGAGGGACACAACACGTTTGGCTTGGGAAAGTCGTGACCC
ATGGCGTTCATGAATCCAATCAGGCCGAGACGTGTAC-------------------------------ACGTTCATGGCA
TTACGCTTCGCGGTTTCAGAGACCAACACGTACAGGAAAAAGGGTTACTCAACTCAAATAAAGCCACCGTCGAGTTGCCA
ACACTATGTACTCAGATCACCAACCTAACAAT-------------TTAGAGACAACAAAACCACGGATCGATCAATGATG
GCAGCT----GATATCGAGAAGGGATCAGAGGACGCCGCCGCC---AACGACGTCAGGACTGCGTACGCCCAGCTGCGCA
GCAGGCGCCGATTCCTGTGGCAGCTGACTCTGCTCGAAGTCGACTTGATCCTCGGCATCGGAGCGCTGATGGCGTGCATC
GAGCCGTCCACCACCGGGCCCAAGGTGTACCTCGCCTCCCGCGTCGTCGGGTATGCCGGCCATGTCGTCGCCGTGTGCTG
GGGACTCTTCATCGTTTACCAATGGACCCTGTCTGCTAAAGAGCATCAGAGGATCCTAGACTCTATCAAGTA---AATGT
GTATTCTAGTTCTAGTACGTAGTACTTTCATGTCGATCATGCATGTACGTGTGGTATG----------------------
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>chr2B_774
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-------------------------------------------------------------------------------C
ATGGCGTTCATGAATCCAATCAGGCCGAGACGTGTAC---------------------------------GTTCATGGCA
TTACGCTTCGCGGTTTCAGAGACCAACACGTACAGGAAAAAGGGTTACTCAACTCAAATAAAGCCACCGTCGAGTTGCCA
ACACTATGTACTCA-----CCAACCT---------------------------AACAAAACCACAGATCGATCGATGATG
GCAGCT----GATATCGAGACGGGATCACAGGACGCCGCCG---GCAACGACGTCAGGAGCGCGTACGCCGAGCTGCTGC
GCAGGCGCAGATTCCTGTGGCGGCTGACTCTGCTCGAAGTCGTCTTGATCCTCGGCATCGGAGCGCTCATGGCGTGCATC
GAGCCGTCCACCGCCGGGCCCAAGGTGTACCTCGCCTCCCGCGTCGTCGGATATGCCGGCCATGTCGTCGCCGTGTGCTG
GGGACTCTTCATCGTTTACCAATGGACCCTGTCTGCTAAAGAACTCCAGAGGATCCTAGACTCTATCAAGTA---AATGT
GTATTCTAGTTCTAGTACGTAGTACTTTCATGTCGATCATGCATGTACGTGTGGTGTG----------------------
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>SNPs
-------------------------------------------S--------------------------------S---
-----------------------S----------------------------S---------------------------
SSSS-----------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------
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----S-------S---------------------------SSSSSSS-------S-----------------S-----S-
-----------------S----S--------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSS----------S----------------------------------------------------------
-S----------S-S-SS--------------------------------------------------------------
------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------
---S-S-S----------------S-------S--S-S--SS-SSS-SSS--SSSS------------------------
---S---S-----SSSSSSSSSSSSS--SS-SSSSSSSSSSSSSS-----------S-------------------SSSS
-SS-SSSSSS-----------------S---------------S------------------------------------
----------S---------S-----------------------S-S---S-S---------------------------
--------------------S-----------------------------------------------------S-----
---------------------S--------------------------------------------------SSS-----
--------S-S---S-SSSSS--SSS--SSSS-------S--------S---------SSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_947
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-----------------------------------------------TTCGAATAGGCCGAGACGTG-------------
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>reverse_2091
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----------TGATGCCCATCCCAAATGCT--------------------------------------------------
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