>input_sequence_84072
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------ATGTGGGCCTCGCCGGGGAGGC
TGCCGGCGAT---GGAGGAGGAGGAGGAGTGCGAGGCGGGCGCGGGCCACCGGGCGCCGATGGCGTCCTGCTGGGGCCGC
TTCGGCCTGGCGGCGCTGTGGCACAGGCTCCGGCACCTTTTCCTGGCGCGGCGGAGGGCGCGGCACGGCCGCTCCATCCT
CGGCGCCGGCGGGCTCAACTACGACCCGCTGAGCTACGCGCAGAACTTCGACGACAGCAGCCTCGAGCTCCACGAGCCGG
ACTTCACGGCCAGGTTCGCGCCCGCCCGCAACGCCTGCTCGCCCAGGCGG------GCATGA------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------
>chr2A_1_TraesCS2A01G409000
AGGAAAGGAGGGAGGAGAATGGAGGAGCTTGGGTTGGATAAGAGGGTTATAGTGGAAGGGGAGCTCGTCAGAGAACCAAG
CCGGCAGATCGAAGGAAAGGTGCCCCCATCAATGGCTTGAGAGAGATGGGGAACGATGGGAGAGAGGAAAAGAAAAAAAA
ACCATGATGGGAAGGGATAAGAGCGAAGCGGATAAGAACGGAAGCCAGAGAGTAGTGCGTGGTACATTTGTACATGGGTC
CACACAGACGCGCCGCGCGCGACCGGCCCAAAAGTTAGCCGGTCGTCCGGCTGTAAACGTTTACCAAGTTGAATTCCTGG
ATCCGCTAGTTGATGTGCACAAGATTAAGTAATGATTTTGCAGCCTGTTTGCAAGCAACTTTGTAACGATCTTTTTTTTC
CGGGGGAACTTTGTAATGATCTTGATTGAACTTGCTCCACCTATTGCATCTCAAACCTTGCATAAGCTGAACAAACCATT
TGCCAATTGCCATTCATCAGGGGCTCCATCTGTCGCCAAAT--TTACGGATCCAAACGGCAAGGTCTTAAAGCCCCAAGT
CGGCTAGCAGTGCAATGTTGCTCAGCAAATGTACGGCCAGAAAATGCATCACGCCAAGTAACACATTAAAATCCAAACAG
AAACTCACCCCATTACAGTAAGTTTGCACACGGCAGCGGAAAACACGTCGCTCGCATTCCGAATCTGAAAAGGACGGTGA
-CCCCCACGAGAAGAGCGCTGGCACTACGACGGAATGCGCCAAACTGCAAACCGAACGGGAG-----GGAACACGCCTCA
CCACGCACCTGTCGCGCCACCTCCCACCCATCGCGGCCGTCGACATCGCATCCCACGACCCCACCCCACCC---CCCTTC
CCGGGCCGTCCGCCTCAGCTACCAAGTCGGCCAGACCAACCAACCATCAACGCACAGCTCACTCCAGCACTCCTCCTCCC
TCCCCCTTCTCTCTCTCTCCCGCTCTGCTGGTCGGCGAGAGG-------CAGCCTGCCATGTGGGCCTCGCCGGGGAGGC
TGCCGGCGAT---GGAGGAGGAGGAGGAGTGCGAGGCGGGCGCGGGCCACCGGGCGCCGATGGCGTCCTGCTGGGGCCGC
TTCGGCCTGGCGGCGCTGTGGCACAGGCTCCGGCACCTTTTCCTGGCGCGGCGGAGGGCGCGGCACGGCCGCTCCATCCT
CGGCGCCGGCGGGCTCAACTACGACCCGCTGAGCTACGCGCAGAACTTCGACGACAGCAGCCTCGAGCTCCACGAGCCGG
ACTTCACGGCCAGGTTCGCGCCCGCCCGCAACGCCTGCTCGCCCAGGCGG------GCATGAGCATGACGACGCGCCACT
TCTCGGCGCCCCGGTGGCATACGGAGGATCCCTTTTGCCACTTCTCGGCGCCTTTGTGCGCCCCTTTGAGTGGTAAAAAG
GCTTTATTTAATCCACGTATTTTCGGATAAATGTACATGTACTACATGTCATGCGGGTGACGCAAGTAGTTTTCGTTTTT
ATTCGC-GGGTGTAAATATTCTTGTGGTTTTCTTCCGAAAGAAAGAAAAAACAGCATGGGTTGTGATGAACTGCATAGGA
GCCAGTCAGTGCATGTCTGTTTGGTCATCAGAGATTCGGAACAAGTTCCTC-----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--CTGATTAAATTTCTACGCTCCAAATGTGCATCAAGTTGGGAGCATTTCATGTGGTACTTATCTCAGCTTTAGACTTAA
TCG-TAGCAGTTTAAGCTAAATACTCCCTTTGCTCCTAAATATAAGTTTTTTTAGAGATTTCAATATATATTATATACGG
AGCAAAGTGAGTGAATCTACACTCTAAATTAAATCTATATCATATTGCAAAATTTAAAAAAAACATATATTTAGAAACGG
AAGGAGTAGCTCATTGCACGTCAAATAAGTTGCTGAATAGTGAATAGTACTACTTTGTTGGCTTGTTGATA--TCTTGCA
GAGTCGTGTCTGGGCATTATTATAAACAGTGTACGTTGCTCCGTGGG-TCC--------TTTTGCCGGTACCATTGTCGA
CTTTTATTTGTTGTCTTAATCGAATTATTTGATATTTGAGCGCCTGCTTCTGTTGGAAAAGGGAAAGAGATAGTATGACG
GATATGCCTTTTTATTGGGGTGTGTTTGCTACTAATTGTAGCTTAGCTTTCGGAGGGAATATTCTCACGGAAATCTATGG
ATAACGCATCAACACGCAACTTGGGAGAAAATATCATAAACCAGGCAATTAGAACACGGACTCGCAAATCTGGCCCGCAG
ACGCATGTGGACGCGTCCGCGGATACTGATTGGACACCTCTCAAATATCGCCTCACACATTTACAT
>chr2B_407
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------AACTTTGTAATGATCTTGGTTGAACTTGCTCCACCTATTGCACCTCAAAACTTGCACAAGTTGTACAAACCATT
TGCCAATTGCCATTTATCAAGGGCTCCATCTGTCGCCAAAT--TTATTGATCCAAATGGCAAGGTCTTAAAGTCCCAAGT
CGGCTAGCAGTGCAACGTTGCTCAGCAACTGTACGGCCAGAAAACGCATCACGCCACGTAATACATTAA-ATCCAAACAG
AAACTGACCCTATTACAGTAAGTTTGCACACGGCAGCAGAAAACACGTCGCTCGCATTCCGAATCTGAAAAGGACGGTGA
CCCCCCACGAGAAGAGCGCTGGCACTACGATGGAATGTGCCAAACTGCAAGCCGAACGGAAG-----GGAACGCGCCTCG
CCACGCACCTGTCGCACCACCTCCCACCCATCGCGGCCGTCGACATCGCATCCCACGACCCCACCCCCAATCCTCCCTTC
CCGGGCCGTCCGCCTCAGCTACCAAGTCGGCCAATCCAACCAACCATCAACACACAGCTCACTCCAGCACTCCTCCTCCC
TCCCGCTTCTCTCTCTCTCCCACTCTGCTGGTCGGCGAGAGG-------CTGCCTGCCATGTGGGCCTCGCCAGGGAGGC
TGCCGGCGATGGAGGAGGAGGAGGAGGAGTGCGAGGCGGACGCGGGCCGCCGGGCGCCGATGGCGTCCTGCTGGGGCCGC
TTCGGCCTGGCGGCGCTGTGGCACCGGCTCCGGCACCTTTTCCTGGCGCGGCGGAGGGCGCGGCACGGCCGCTCCATCCT
CGGCGCCGGCGGGCTCAACTACGACCCGCTGAGCTACGCGCAGAACTTCGACGACAGCAGCCTGGAGCTCCACGAGCCGG
ACTTCACGGCCAGGTTCGCGCCGGCCCGCAACGCCTGCTCGCCCAGGCGG------GCATGA------CGACGCGCCACT
TCTCGGCGCCCCGGTGGCATACGGAGGATCCCTTTTGCCACTTCCTGGCGCCCTTGTGCGCCCCTTTGAGTGGTAAAAAG
GCTTTATTTAATCCACGTATTTTCGGATAAATGTACATGTAC---ATGTCATGCGGATGACGCAAGTAGTTTTCATTTTT
CTTCGC-GGGTGTAAATATTCGTGTGGTGTTCTTCCAAAAGAAAAG-AAAACAGCGGGGTTTCTGATGAACTGCATAGGA
GCCAGTCAGAGCATGTCTGTTTGGTTATCAGAAATTCGGAACAAGTTCCTC-----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--CTGATTAGATTTCTACGCTCCAAATGTGCATCAAGTTCGGAGCATTTCATGTGGTACTTATCTCAGCTTC-GACTTAA
TCGATAGCGGTTTAAGCTAAA-----------------------------------------------------------
--------------------------------------------------------------------------------
------TAGCTCATTGCACGTCAAATAAGTTGCTGAATGT----------TACTTTGTTGGCTTGTTGATA--TCTTGCA
GAGCCGTGTCTGGGCATTATTATGAACAGTGTA--TTGCTCCGTGGGATCC--------TTTTACCGGTACCATTGTCGA
CTTTTCTTTGCTGTCTTAATCGAATTATTTGATATTTGAGCGCCTGCTTCTGTTGGAAAAGGGAAAGAGATAGTATGACG
GATATGCCTTTTTATTGGGAAGTGTTTGCTACTAATTGTAGCTTAGCTTTCGGAGGGAATATTCTCACGGAAATCTATGG
ATAACGCATCAATACGCAACTTGGGAGAAAATATCAAAAACCAGGCCATTAGA---------------------------
------------------------------------------------------------------
>chr2D_407
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------AACTTTGTAATGATCTTGGTTGAACTTGCTCCACCTATTGCACCTCAAAACTTGCACAAGCTGAACAAACCATT
TGCCAATTGCCATTTATCAGGGACTCCATCTATCGCCAAATATTTATGAATCCAAACGGCAAGGTCTTAAAGCCCCAAGT
CGGCTAGCAGTGCAACGTTGCTCGGCAAATGTACGGCCAGAAAATGCATCACGCCAC-TAACATATTAA-ATCCAAACAG
AAACTCACCCTATTACAGTAAGTTTGCACACGGCAGCAGAAAACACGTCGCTCGCATTCCGAATCTGAAAAGGACGGCGA
CCCCCCACGAGAAGAGCGCTGGCACTACGACGGAATGTGCCAAACTGCAAGCCGAACGGAAGGGAAGGGAACGCGCCTCG
CCACGCACCTGTCGCGCCACCTCCCACCCATCGCGGCCGTCGACATCGCATCCCACGACCCCACCCCACC----CCCTTC
CCGGGCCGTCCGCCTCAGCTACCAAGTCGGCCAGACCAACCAACCATCAACGCACAGCTCACTCCAGCACTCCTCCTCCC
TCCCCCTTCTCTCTCCCTCCCGCTCTGCTGGTCAGGTCGACGCTGCCATCTGCCTGCCATGTGGGCCTCGCCAGGGAGGC
TGCCGGCGAT---GGAGGAGGAGGAGGAGTGCGAGGCGGGCGCGGGCCACCGGGCGCCGATGGCGTCCTGCTGGGGCCGC
TTCGGCCTCGCGGCGCTGTGGCACAGGCTCCGGCACCTTTTCCTGGCGAGGCGGAGGGCGCGGCACGGCCGCTCCATCCT
CGGCGCCGGCGGGCTCAACTACGACCCGCTGAGCTACGCGCAGAACTTCGACGACAGCAGCCTTGAGCTCCACGAGCCGG
ACTTCACGGCCAGGTTCGCGCCCGCCCGCAACGCCAGCTCGCCCAGGCGGGCAAGAGCATGA------CGACGCGCCACT
TCTCGGCGCCCCGGTGGCATACGGAGGATCCCTTTTGCCACTTCC----------GTGCGCCCCTTTGAGTGGTAAAAAG
GCTTTATTTAATCCACGTATTTTCGGATAAATGTACATGTACG---TGTCATGCGGATGACGCAAGTAGTTTTCGTTTTT
ATTCGCCGGGTGTAAATATTCTTGTGCTGTTCTCCAAAAGAAAAAG-AAAACAGCAGGGGTTGTGATGAACTGAATAGGA
GCCTCCTATT---------------------AAATTCAGAACAAGTTCGTCCTTATTAATTTTGGGTGTAGCTAGGTCTC
AGTCGACTGAGACTTAACCAAGTCTAAGTTAAGTGATATAGTATGCAAGAATAAAAAAGAAAAACCGAAAAGAATTTTTT
GCACGAATATCCATGCAAAATTAAAGAAAGATACTATCGACTGAGACATAACGAAGTCTAAGTCGACTGAGACTTAGCAA
AACTGATTAATTTTCTACGCTCCAAATGAGCATTACGTTCCGAGCATTTCATGTGGTACTTATCTCAGCTTC-GGCTTAA
TCGATAGCGGTTTAAGCTAAA-----------------------------------------------------------
--------------------------------------------------------------------------------
------TAGCTCATTGCACGTCAAATAAGTTGCTGGATAT----------TACTTTGTTGGCTTGTTTTGAAGTCTTTCA
GAGTCGCGTCTAGGCATTATTATAAACAGTGTATATTAGTCCCTGGGATGCTTTTGCGGTTTTGCCGGTACCATTGTCGA
CTTTTCTTTGCTGTCTTGATCGAATTATTTGATATTTGAGCG-CTGCTTCTGTTGGAAAAGGGAAAGAGATA---TGACG
GATATGCCTTTTGTTTGGGGAGTGTTTGCTACTAATTGTAGCTTAGCTTTCGGAGGGAATATTCTCATGAAAATCTATGG
ATAACGCATCAACACGCAACTTGGGAGAAAATATCATAAACCAGGCCATTAGAGCA------------------------
------------------------------------------------------------------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSS------------------S-----------------------S------S------S-----------------
--------------S-------------------------------S---------------------------------
---------------S----------------------------------------S------------S----------
----------S--------------------------S------------------------------------------
-------------------------------------S------------S--------S------------S------S
----------------------------------------------------------------------S---------
--------------------------------------------------------------------------------
--------------------------------------------------S---------------------S-------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------S----------------
--------------------------------------------------------------SSSSSS------------
--------------------------------------------SS------S---------------------------
------------------------------------------SSS-----------S-----------------------
----------------------------S-------S-------SSS---------S-----------------------
-------------------------S------S-----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------S-------------------------------SS-------
--------S------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSS---------------------------------SSSSSSSSSSS------------------------------
---------------------------------SS---------------------------------------------
-----S----S---------------------------------------------------------------------
--------------------S-----------------------------------------------------------
----------------------------------------------S------S--SSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_141
--------------------------------------------------------------------------------
-----------------------------------------AGAGATGGGGAACGATGGGA-------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------
>reverse_2195
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------GTTGCTCCGTGGGTCCTTTT--------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------
