>input_sequence_84043
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----------------------------------------ATGCAGGATATGGCGCTGGCGATGCAACACTCTTACCTTC
TGGTGGTATTGCAGTCCGATTCTTCAGAGGCCTTGTCAAGTTTGTCAAATACTGCCATAGTTCGTTCGGCGTATGGCCAG
ATAGTCCTTCAGATTAAGGATCTCCTTGGTAGTAGGGAGATTTTTCCTCAGAAAATTAGTCGTACTCAAAATAGAGTTGT
TGATCGGTTGGCCAATTATAGCCGATCTAAGCGAGCCACCGCTGTGTGGCTACGCTCGGTACCACCTTGTATCAAGGGTT
GGTTGCCTCTTAACTGCAACTCTATGAACTTGCAATAA------------------------------------------
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>chr7B_1_TraesCS7B01G306000
TTTTCCTATATTCTATTTAATTAATCGGATAATCCTCCTGGCTAAATGAGTTGCGTGTAGCCTCTCTCAATGACGTGGGA
AGTGCAGCCAAAGGGACGATCGTCCCCGTGGTATACTGTTCAATGGGATCAGAGCTCATGCCCGTCGTGTCCCGAGCAGC
CGTGGTGATGTAGGCCTCTCCTACCATAGAAACGACAAAGCTACTTGGGATGTAGTCACCACAGACCACGTCCTGAACCT
TGGCGTGATACTCCTCATCCTATTTCTTCTTACTCCAAATCTGCCAATCTGATGTTCCTTCAAAATTCAAAGAACGATGC
ACCGTACTCAGAGGCTACGATGAACCGTTGAAGCTTCTCTCTTTCCAGATAGGCGAGGCCTTGATGTCGGAGGAGAAGAC
CGATGCACGCTATCATCGTGTCTTCTTACTGTGTAGTGGTGAAGTCGGATTTGCGCAAGAGGTCTCTTGGCGGCAATTAT
GTCCTATGAAAGGTAGGTCCATTATTTGGATCTGCCACTGCCAGATGCGATTGTTTCTGCTGGAGACTTGACAGCAAAGT
TAGAGCTCCCTAATTCTCGACCCCTTTGGCTATTGTTTTGCATAAGCCGACTAATATCTTGAGTGTTGATCGCCGAGATG
ACTCTTGCTTGGTCGTCCACGGTGAAGTCGGAGTCACTTGCTCGGCAAAAAGTGACAACGATGCCAATTTGACAACATCC
TCAACAGAGTTCCTCTCTTTGGTGGTGTGCGTGTTGGTCTTTGTGGGTAGCCAAGTTGGACGGTGTGTTGTGTGTTGTGG
GCATGATAGTGTGTTCTTGTTGGCTGGCCCCGGTACTGGGCACGGTGGCCCTCTCGGTTGATGGATCATTTCAGGAGTCA
GATGGCTCGGAGGCCGCCATTGGGACGGTTCTAAGGAACAATGAGGGATCTATTATATTTGCGGCATACAAGTTCATTTT
CCACTGCAATGATCCGTTGGAAGTTGAGCTGCATGCGATCATGCAGGATATGGCGCTGGCGATGCAACACTCTTACCTTC
TGGTGGTATTGCAGTCCGATTCTTCAGAGGCCTTGTCAAGTTTGTCAAATACTGCCATAGTTCGTTCGGCGTATGGCCAG
ATAGTCCTTCAGATTAAGGATCTCCTTGGTAGTAGGGAGATTTTTCCTCAGAAAATTAGTCGTACTCAAAATAGAGTTGT
TGATCGGTTGGCCAATTATAGCCGATCTAAGCGAGCCACCGCTGTGTGGCTACGCTCGGTACCACCTTGTATCAAGGGTT
GGTTGCCTCTTAACTGCAACTCTATGAACTTGCAATAAAATT-CCTTTTACCCCCGCGAAAAAATAAGAGTATTCTTGTA
AGGATTTGTACCATTGAATATATAGCATTTGGTCTCTTAAAAATAAGTTTCCTGTTGGCGCCATCCGTTAGAAAGAGATG
GACAAACATATGAATTATTATTGCACGTGGTAACACTACGTTCACTCCAAACTACAAATCACA-----------------
-------------------------------CTACTATAT--------------------TAAAATGTACGCGCGTGGTA
AAGGAAATGGAAACGCAACACATGACAACAAACTAGCTGCTT---------GCCCGTCCCATCCACGCACCAATAATGGT
ATTACAATATATGTCGCCGTATATTCACAGCCACAAGCTCCTCACGCTATATCAACTTTTTCTTTTCAGAAGAAAAACAC
GCTATCTGGAGCAACTAGAGGCGGTTTATTTAATGCGTCGTCCGTCGTGCCAATTCAGATAGCTGTGATTGGTTGACTAG
AACGATTCATCTCCTATCCCGGATGTCCAAATGGAGAAGGCAGAGTGTTTTGAACGCCAACAACGCATAGAAACAAGATG
ACTTTAACGTGCTT-GACTGGAGAAATCGGGAATGGAAATGGCCGCCTTGTGGCTCCCGTTTCCCAACGTCAGAATGTTC
GTGAACG----AAGGCACGAGGGCCACGAGGACACCAGGCCCTATTTTTTTAATCGATTTGGCGGTCCCTCGCCGACAGA
ATGTTCACTGAAATTCAATAGCTGCAACATACTTCCTTTTTTCCGGTTTATAGAGCTTATCTTAAAATTTTAGTTTTTCC
ATTTTATAAGGCTCAATTTGGTTGTTCCCCATCACATGTTCAGATTTTAAGGTGCATTAAATCATTGCATGCAAGTATTA
AGAGAAAATTGACCAATGCATGTACTTTATGCATGCATACATTGCAATTAATGCATTGATAAACATAATTTTTTGAGAAA
AACAAAAGCATTAATTAGGTGCTTTTACAAACTACAAAAAATATTCCATCACTCACCATCTACCTTGGTTGGTGAGATTT
T
>chr2A_826
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-------------------------GGCCCCTGCATTGGGCATGGTGGCCCTCTCGGTCGATGGCTCCTTCCAGGAGGCC
GACGGGTCCGCGGCAGCTGGCATGGTC---CTAAGGAACAATGATGGGTCTATTATATTTGCGGCATATTGGTTCATATT
TCACTACAATTATCCGTTGGAAGCGGAACTGCATACGAACATGCAAGG------GCTGGCGATCCAACACTCTAACCTCT
CGGTGGTACTTCAATCGGAT-------AGGCTTTGTCAAGTCTGGCAAGTGAAGCCTTGGTTCGTTTGGTGTATGACCAG
TTAGTTGTTGAGATTAAGAATCTCTTTGGTAGTAGGGAGTTTTTTCCTCAGAAAATTAGTCGTACTCAAAATAGAGTTGC
CGGCCGGTTGGCCAATTACAACCGGTCTGAGTGAGATACCGTTGTGTGGCTTGGTTTGGTTCCACCTTGTATTGAGGACT
TGTGGCCTCTTGACTGTAACTCTATGAACTTGCAATGAAACTCCCTTTTACCCCCGTGAAAAAAT---------------
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>chr7D_1346
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------------------------------------------------------------------AGAGTGTTCTTGTA
AG-ATTTGTACCACTGAATATATGGCCTTTGGACTCTTAAAAAGAAG-TTCCCGTTGGCGCCATCCGTCAGAAAGAGACG
GACAAACATATGAATTATTATTGCAGGTGGTGACACTACGTTCACTCCAAACTACAAATCACATTTTCTTTAGATGACAA
ATCACACCCTTTTTTTAGACGACAAATCACACTTCTTAATAAGAAGACATCCATCTGTACTAAAATATACGCGTGTGGTA
AAAGAAATGGAAACGCAACACAT-ACAACAAACTAGTACGTAGTAGCTGTAGTCCGTCCCATCCACGCACCAATAATGGT
AT-ACAATACATATCGCCGTATATTCACAGCCACAAGCTCCTCACGCTATATCAACTTTCCCTTTTGC--AGAAA--CAC
GCTATCTA------------------TATCTAATGCGTCGTCCGTCGTGCCAATTCAGATAGCTGTGATTGGTTGACTAG
AACGATTCACCTCCTATCCCGGATGTCCAAATGGAGAGGACAGAGTGTTTTGCACGCCAACAACGCATAGAAACAAGAAG
GCTTTAACGTGTTTGGACTGGAGAG-------ATGGAAATGGCCGGCTTGTGGCTCCCGTTTCCCAACGTCAGAATGTTG
GT----G----AAGGCACGAGGGCCACGAGGACAGCAGGTCCTATTG-TTTATTCGATTTGGCAGTCCCTCGCCGACAGA
ATATTCACTGAAATTCGGTAGCTGCACCATA-------------------------------------------------
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>chr7A_1393
CTCTT---------------------------------------------------------------------------
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---------------------------------------AAAAAAAG-TTCCCGTTGGCCG-ATCCGTCAGAAAGAGATG
GACAAACATATGAATTATTATTGCAGGTGATAACACTACGTTCACTCCAAACTACAT-----------------------
---------------------ACAAATCACACTACTATATTAAAATT-------------------GTACGCGCGTGCTA
AAGGAAATGGAAACGCAACGCATGACAACAAACTAGCTGCTT---------GTCCGTCCCATCCACGCACCAATAATGAT
AT-ACAATACATATTGCCGTATATTCACAGCCACAAGCTCCTCGCGCTACATCAACTTTTTCTTTTCAGAAGAAA--CAC
GCTATCTGGAGCAACTAGCGGCGGTTTATCTAATGCGTCGTTCGTCGTGCCAATTCAGATAGCTGTGATTGGTTGACTAG
AACGATTCACCTCCTATCCCGGATGTCCAAATGGAGAGGGCAGAGTGTTTTGAACGCCAACAACGCATAGAAATAAGAAG
GCTT-AACGTGCTT-GACTGGAGAG-------ATGGAAATGGCCGCCTTGTGGCTCCCGTTTCCCAACGTCAGAATGTTG
GT----GGACGAAGGCACGAGGGCCACGAGGACACCAGGCCCTATTT-TTAAATCGATTTGGCAGTCCCTCGCCGACAGA
ATGTTCACAGAAATTCAGTAGCTGCAACATA-------------------------------------------------
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>SNPs
S-S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSS------S-S-S------S---------------S-----S--S--S------S-S
--S--S--S-S---S--SSSSSS-SSSSSS--------------S--S--------------------SSS------S--
S----S----S------------SS--S------S---S------S-SSSSSSS---------S---------S----SS
S-------S-S--S--S---SSSSSSS----S---------S--S---S-SSS---S-S-------S--S-----S----
S----SS--S--------S-----S--------------S---------------------------------------S
S-SS--------------S-S---S---S--S---SS----S---------SS-S-S---S-----------SS---SS-
S--S-------S----S-------------------S---S---------------S--------S-----S--------
--S----------S---------S--S-----S----------S---S----S---------------S-----------
-------------------------S------------------------------------------------------
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----------------------------------------------------S---------------------------
--S------S--S--------------------------------------------------------------SS---
------------------S----------S--------------------------------------------------
---------S---------------------------S----------------------------------------S-
S-----------------------SSSSSSSS-----------------------------------------------S
--SSSS-----------------------------------------S---------------S----------------
-----------------S-------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
S
>forward_658
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------------------------------------------------------------------------------TG
ACTCTTGCTTGGTCGTCC--------------------------------------------------------------
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>reverse_1951
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------------------------------GAATGGAAATGGCCGCCTTG------------------------------
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