>input_sequence_84042
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--------------------------------------------------------------------ATGGGGGGCAGC
ATGGAGGAGCAGCTGCACATGACGGCGGCGGCGAATAAGATCGCGGTGCCGTTGAAGAAGCACCACCCGAACCTCCACAT
GGCCCACGCTGGCGCGGGCAAGGGCGGCGGGGAGGCGCCGGCGGTGATGGTGACCACGCCCAAGGCGTCGTCGCAGGCGC
CCAAGCACGCGCACCTGCTGGCGAGCCCACGGGCGTGCCTCTGCTCGCCGACGACGCACGCCGGGTCGTTCCGGTGCAGG
CTCCACCGCGGCGGCGCCGGC------GTCGGCCTCCACGAGATGGGCAAGAAGAGCAGCCCTGGCGCGTGA--------
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>chr7B_1_TraesCS7B01G280800
CCTTCACTTGAACTCCACTAAATACAAATTCTGCTCAAACAGTGCATATAATAAAAAAAGCATATTGTTGGAAACCGGCG
GTGACTTGAGAAAATCCCAACAGGACGCATTTGAGCAATTTGTGATAAATGTATCGTTCAACATCTGAACTCCTTAGAAA
TGGAAAGTTAGGGTTGCTACCAGTGGTGGGGCTACAACTACCTTCAGAGGGAGAAAGATGTGGAAAGGCAATCAGTTTCA
TTTATAATTTGCCACTAATTGTTATGTGAAAATTATGCTAACAATCATAACAAATCAGAGATATAAAA--AAACTTATGG
CATCGTTAAAAACGGTGCAACAAAGGTGCTTCTAGTATATGCATATGGATGCAGATTTCCAAAAG--AAAACAGAACAAT
TAGGTAGAATGTACCATAGGTAGAAGACATAGAAGACAAAACTTATGGAGTAATC-------------------------
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----------------------------------------------------------------------------TACA
TTTGGATGACCCACATAAATGTCGCAAAACCACTCTAAAAATAGTGTCCCCTTGACTCCTTATATTGGACTGTGCTCTGT
CCATTTTGAATCTGCATGGATAAGG--ATATATCCGATCCATTAGTGGCGCCAACGAATTCGGGATAGGCGGTAAAAATA
GCTTGGTGTGTGGCCGTTACGTGGCTTTAAATAGACCAGTGCATGGATAAAGCACCCCCTTTTTTATCTCCCTCCCCGCT
CTGTTACTGCTCACCACTACAACCCGTAGAGTAATTTAACTTAGGCTGATACGAGGATCCACAATTTACTGCACATTAGT
CTTCCATTTCAGCAAAGGTAACTCGCATGATTCATTCTCCATGTACGTCTTTCTTGTGTTCAGATTTCTTGGGAGGGTTT
GGATGAGAGGTTTCTGGCTAGACGATGGCAGTAA-TTTGTTAAACATTTCTAGTACGATGTTCGTTCTTTCACCGGTTCT
TGGTTCTGATAAAACGTTCGTTGGAATGGTAGAGGTCGATCGAGATTGCCGTCGTCGTCGCTCGGTCGATGGGGGGCAGC
ATGGAGGAGCAGCTGCACATGACGGCGGCGGCGAATAAGATCGCGGTGCCGTTGAAGAAGCACCACCCGAACCTCCACAT
GGCCCACGCTGGCGCGGGCAAGGGCGGCGGGGAGGCGCCGGCGGTGATGGTGACCACGCCCAAGGCGTCGTCGCAGGCGC
CCAAGCACGCGCACCTGCTGGCGAGCCCACGGGCGTGCCTCTGCTCGCCGACGACGCACGCCGGGTCGTTCCGGTGCAGG
CTCCACCGCGGCGGCGCCGGC------GTCGGCCTCCACGAGATGGGCAAGAAGAGCAGCCCTGGCGCGTGACGCGCGCG
CCCACCCGTCCGCACGTTCTTGTTTCTGT-----TTTGCTGGATGGGTGGTGTGCAGTGCATGGGAAGGGAAAATA--TT
TTTTTTCTCTCCTTCTTTTTGGATCCTCTGTTTGCGTCGACGGGGAACTTCATCTTGTCATCTGCAGTCGACGATTACGA
ATGTTGATCGATTCTGTGCCTGATGGAAACCGGCCGCCTGTATATATAACAAAGTGTACATAACTGCCGGTTCAGAAATG
GGCAATTGCAGAGTTCTAGATCAAAAGTTTTCCCTCAAAAAAAATC----------AAAAGTTTCAGAATATTTTTATAC
GCCTTGAAGAAAAAAGATTAAAGTGTTGACAGTGGGATTTGAACCCACGCCCTTTCGGACCAGAGCCTTAATCTGGCGCC
TTAGACCAACTCGGCCATATCAACTTGGTGGC-AACAATCCTCCTGCAGAGATCACGAACGCTTTCTACCATCATCCTTC
TTAACTAATACCGCTTTCTAAAACATTTTCTGAAC-TGTCTCTCAATTTCATTCTAATTTGAAATGCCACTGGGTATTGG
CTAATTA--TAGTATTGGGACTAAGCATCATGTAAAAAACCAACATGGCGCACAGCACCTGATAACTTGGCCACCTACCT
CTGTGCAGTCTGATCATCTGATGATAACGAGCGAAACAGGCAGAGGTGACACTCTACAAATCCAGAGCATAGCAAAGAAA
GTGGCAACCAACAACATGCTACGGAGCAGGCACACTATATTCAGATTTCGGAGCCACATAGTTGTGGATTATATCACTAG
TACGTAATAATGGTCTTTAGGCAACAGGATAAATAACACTGGTCTTTTCAGTA---CACTAAAATGTACTCGGGG-----
-TAGATGAAAATTGAAACATACATGTATGCTAATGGTAGTTGAAAACTTGAAATGTGCCCTATCTCAAGAAAATGCATAC
CTACAAACATGTGTTTCCCAAAAGGCTCGGAGCAATCATGTGAACATATAGCGAATTAAACC
>chr7A_17
----------------ACTAAATACAAATTCCCCTCAAACAGTGCACATAACAAAAAAGACATATTGCTGAAAACCGGCG
GTGGCTTGAGAAAATCCCAATAGGACGCATTTGAGCAATTTGTGATAAATGTATCGTTCAAAATCTGAACT---------
----------------------------------------CCTTCGGAGGAAGAAAGTTGTGGAAAGGCAATCAGTTTCA
TTTATAATTTGCCACTAATTTTTATGTGAAAATTATGCTAACAATCATAACAAATCGGAGATATAAAAAGAAACTTATGG
CATCGTTAAAAACGGTGCAACAAATGTGCTTCTAGTATATGCATATGGATGCAGATTTCCAAAAAAAAAACCAGAACAAT
TAGGTAGAATGTACCATAGGTAGAAGACATAGAAGACAAAACTTATGGAGTAATCCCTCCGTCCGCGAATAAGTGTACAT
TTAGCTTTTATCTTAAGTCAAAGTTTTAAAACTTTGACCGACTTTCTAGGGAAAAGTAGAAGCATTTATGGCACTAAATT
AGTATCACTAGATCTGTTTTGAAATGTACTTTGATAATATACCAATTTGATGCCATGTATGTTACCACTATTTTTTATGA
AGTTGGTCAAAATTTTAAAACTTTGACTTAGAATAAAAGCTAGATGTACACTTATTCGTGGACGGAGGGAGTAATCTACA
CTTGGATGACCCACACAAATGTCGCAAAATCACTCTAAAAATAGCGACCCCTTGACTCCTTATATTGGACTGTGCTCTGT
CCATTTTGAATCTGCATGGATATGG--ATATATCCGATCCATGAGTGGCGCCAAGGAATTCGGGATAGGCGGTAAAAATA
GCTTGGTGT--GGCCGTTGCGTGGCTTTAAATAGACCAATGCATGGATAAAGCACCCCCTTTTTTACCTCCCTCCCCGCT
TTGTCACTGCTCACCACTACAACCCGTAGAGTAATTTAACTTAGGCTGATACAAAGATCCACAATTTACTGCACATTAGT
CTTCCATTTCGGCAAAGGTAACTCGCATGATTCATTCTCCATGTACGTCTTTCTTGTGTTCAGATTTTTTTGTGGGGTTT
GTATGAGAGGTTTCTGGGTAGACGATGGCAGTAATTTTGATAA-CATTTGTAGTACGATCTTCGTTGTTTCACCGGTTCT
TGGTTCTGATCAAACGTTCGTTGGAATGGTAGAGGTCGATCGAGATTGCCGTCGTCGTGGCTCGGTCGATGGGGGGCAGC
ATGGAGGAGCAGCTGCAGGTGCCGGCGGCGGCGAAGAAGATCGCGGTGCCGTTGAAGAAGCACCACCCCAACCTCCACGT
GGCCCACGCCGGCGCGGGCAAGGGCGGCGGGGAGGCGCCGGCGGTGATGGTGACCACGCCCAAGGCGGCGTCGCAGGGGC
CGAAGCACGCGCACCTGCTGGCGAGCCCCCGGGCGTGCCTCTGCTCGCCGACGACGCACGCCGGGTCGTTCCGGTGCAGG
CTCCACCGCGCCGGCGCCGGC------GCCGGCCTCCACGAGATGGGCAAGAAGACCAGCCCCGGCGCGTGACGCGCGCG
CCCACCCGTCCGCACGTTCTTGTTTCTCT-----TTTGCTGGATGGGTGGTGTGCAGTGCATGGAAAGGGAAAAGTGTTT
TCTTTTCTCTCCTTCTTTTTGGATCCTCTATTTGCGTCGACGGGGAACTTCATCTGGTTTTCTGCAGTCGACGATTATGA
ATGTTGATCGATTCTGTACCTGATGGAACATGGCCATCTGTATATATAACAAAGTGTACATAACTGCCGGTTCAGGGATG
GGCAATTGCACAGCTCTAGTAGATCAAAAAGTTTCAGAATATACCTCGCCAAAAAAAAAAGTTTCGGAATATTTTTATAC
GCCTGGAAGAAAAAAGATCAAC-TGTTGACAGTGGGATTTGAACCCACGCCCTTTCGGACCAGAGCCTTAATCTGGCGCC
TTAGACCAACTCGGCCATATCAACTTGTTGGCAAAAAATCCTCCCGCAGAGATCATGAACGCTTTCTACCATCATCCTTC
TGC----------------AAAACAATTTCTGAACCTGTCTCTCAATTTCATTCTAATTTGAAATATCACTGGGTA-TTA
CTAGCTAATTAGTATTGGGACAAAGCATCATGTAA--ACCCAACATGGCGCACAGCACCTGATAACTTGGCCACCTAGCT
CTGTGCAGTCTGCTCATCTGATGGCAACGAACGAAACAGACAGAGGTGACACTCTACAAAACCAGAGCATAGCAAAGAAA
ATGGCAACCAACAACATGCTACAGG---------------------------GCCACATAGTTGTAGGTTATATCACTAG
TATGTAATACTGGTCTTTAGGTAACAGGTTAAATAACACTGGTCTTTTCAGAA---CACTAAAATGTACTCAAGGACAAG
GTAGGTGAAAGTTGAAACATAGATGTATGCTAATGGTAGTTGAAAACTTGAAATTTGACGTATCTCAAGAAAATGCATAA
CTACAAACATGTGTTTCCAAAAAGGCTCGGATCAATCATGTGAACATATAGCGAACTAAACC
>chr7D_17
----------------ACTAAATACAAAGTCTGCTCAAACAGTGCATATAGTAAAAAATATATATAGTTGAAAACTGGCG
GTGACTTGAGAAAATCCCAATAGGACGCATCCGAGCAATTGTGATG--ATGTATCGTTCAACATCTGAACTCCTTAGAAA
TGGAAAGTTAGGGTTGCTCCCAGTGGTGGGG------CTACCTTCAGAGGGAGAAAGTTGTGGAAAGGCCATCAGTTTCA
TGTATAATTTGCCACTACTTTTTATGTGAAAATTATGCTAACAATCATAACAAATTGGAGATATTAAAAAAAACTTAAGG
CATCGTTAAAACCAGTGCAACAAAGGTGCTTCTAGTATACGCATATGAATGCAGATTTCCAAAAAAA----CAGAACAAT
TAGGTAGATTGTACCATAGGTAGAAGACATAGAAGACAAAACTTATGGA-------------------------------
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----------------------------------------------------------------------GTAATCTACA
TTTGGATGACCCACACAAATGTCGCAAAATCACTCTAAAAATAGTGTCCCCTTGACTCCTTATATTGGACTGTGCTCTGT
CCATTTTGAATATGCATGGATATGGATATATATCCGATCCATGAGTGGCGCCAACGAATTCGGGATAGGCGGTAAAAATA
GCT-GGTGT--GGCCGTTACGTGGCTTTAAATAGACCAGTGCATGGATAAAGCACCCCCTTTTTTATCTCCCTCCCCGCT
TTGTTACTGCTCACCACTACAACCCGTAGAGTAATTTAACTTAGGCTGATACAAGGATCCACAATTAACTGCACATTAGT
CTTCCATTTCAGCAAAGGTAACTCGCATGATTCATTCTCCATGTGCGTCTTTCTTGTGTTCAGATTTTTTGGGAGGGTTT
GGATGAGAGGTTTCTGGCTAGACGATGGCAGTAA-TTTGTTAA-CATTTCTAGTACGATGTTCGTTGTTTCACCGGTCCT
TGGTTCTGATCAAACCTTCGTTGGAATGGTAGAGGTCGATCGAGATTGCCGTCGTCGTCGCTCGGTCGATGGGGGGCAGC
ATGGAGGAGCAGCTGCAGACGCCGGCGGCGGCGAATAAGATCGCGGTGCCGTTGAAGAAGCACCACCCCAACCTCCACAT
GGCCCACGCCGGCGCGGGCAAGGGCGGCGGGAAGGCGCCGGCGGTGATGGTGACCACGCCCAAGGCGGCGTCGCAGGCGC
CGAAGCACGCGCACCTGCTGGCGAGCCCACGGGCGTGCCTCTGCTCGCCGACGACGCACGCCGGGTCGTTCCGGTGCAGG
CTCCACCGCGGCGGCGTCGGCGCCGGCGCCGGCCTCCACGAGATGGGCAAGAAGACCAGCCCCGGCGCGTGACGCGCGCG
CCCACCCGTCCGCACGTTCTTGTTTCTGTTTTGCTTTGCTGGATGGGTGGTGTGCA------------------------
------------------------------------TCGACGGGGAAATTCATCTGGTTTTCTGCAGTCGACGATTATAA
ATGTTGATCGATTCTCTACCTGATGGAAACCGGCCACCTGTATATATAAGAAAGTGTACATAACTGCCGGTTCAGTAATG
GGCAATTGCAGAGTTCTAGC-----------------------------------AAAAAGTTTCAGAATATTTTTACAC
GTCTGGAAGAAAAAATG-TAAATTGTTCACAGTGGGATTTGAACCCACGCCCTTTCGCACCAGAGCCTTAATCTGGCGCC
TTAGACCAACTCGGCCATATCAACTTGCTGGC-AAAAATCCTCCTGCAGAGATCAGAAACGCTTTCTACCATCATCCTTC
TTAGTTAATACCCCTTTCTAAAACATTTTCTGAACCTGTCTCTCAATTTCATTCTAATTTGAAATCCCACTAGGTATTTA
CTAGCTAATTGGTATTGGAACAAAGCATCGTGTAA--AACCAACATGGCGCACAGCACCTGATAACTTGGCCACCTAGCT
CTGTGCAGTCTGATCATCTGATGATAACGAGCGAAACAGACAGAGGTGACA--CTACAAAACCAGAGCATAGCAAAGAAA
GTGCCAACCAACAACATGCTACAGAGCAGGCACACTATATTCAGATTTCGGAGCCACATAGTTGCGGATTATATCACTAG
TACGTAATACTGGTCTTTAGGCAACAGGATAAATAACACTGGTCTTTTCAGTACTGCACTAAAATGTACTCAAGG-----
-TAGATGAAAGCTGAAACATTCATGTATGCTAATGGTAGTTGAAAACTTGAAATGTGCCCTATCTCAAGAAAATGCATAC
CTACAAACATGTGTTTCCCAAAAGGCTCAGATCAATCATGTGAACATATAGCGAATTAAACC
>SNPs
SSSSSSSSSSSSSSSS------------------------------------------SS----------S---------
--------------------S-----------------------------------------------------------
------------------S------------SSSSSS--------------------S----------------------
--------------------S-----------------------------------S-----------------------
----------------------------------------------------------------S-----S---------
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---------------S-------------S--------------------------------------------------
----------------------S-------------------S-------------------------------------
---------SS---------------------------------------------------------------------
S---------------------------------------------------S---------------------------
-------------------------------------------------------------------S------------
-------------------------------------------S----------------------S-------------
----------S---------------------------------------------------------------------
-----------------S---S----------------------------------------------S-----------
---------S---------------------------------------------------------S------------
-S------------------------------------------------------------------------------
----------------------------S--------------------------S------S-----------------
----------------------------------------------------------------S---------SS----
-S---------------------------S-------------------------S--SS-----------------S--
-----------------S-----------------S---------------------------------------S----
-------------------SSS-SS-SSSSSSSSSSS--S-S-SSS----------------------------------
----S-----------------S---------------------------------------------------------
---------------------------S-------S-------------------S------------------------
---SS-------S----------------------------------------------------S------------SS
---SS----------------S-------------SS----------------------------------------S--
---------------------------------------S--------------------S-------------------
----------------------S---------------------------------------------------------
---------S-------------------------------------------------------------SS-------
----------S---------------------------------------------------------------------
-------------------------------S------------------------------
>forward_961
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-------------------------------------------------------------TTTTATCTCCCTCCCCGCT
C-------------------------------------------------------------------------------
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>reverse_2196
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-----------------------------------AAAACCAACATGGCGCACAG-------------------------
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