>input_sequence_84041
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-------------------------------------------------------------------------------A
TGGTGTGCATAGGCGTCGCCGAGTGCCAGCACGTCCACCGAACGGCGCTGGACTACTTCCTCGCTGTGCTCATCGTCGTC
GCGGCCGTCGTGGCGGTGAGGTTGCTCATCTGTGCCCTGGTGCGGTGCCTCAAGGACGGCTGCGTGGCGCACCACCACCA
CCAC---------AGCCCCGCGACCACCGACACCGACGAGGACATGGAGGTCTGGGCCGGCACGGAGCTGGATATCCATA
GGCATGCTGATCGGCATGTCCAGCAGGATCGTCGGCCGGAAGCCGTCGAGGTGGTGGTCCCACCGCCGGCTAGGACCACG
GCATAG--------------------------------------------------------------------------
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>chr7B_1_TraesCS7B01G165700
TTAGGTCAGCAGAGGTGATTACCAACAGATTGGTCGGATCTGTCGCTGGTTTTGACCGCCCAATTGAAGTTTACTACAAA
TGATGGAATGAGATTAACGCCTGCCTCTTGCTCAGAGGCTCATGTGGTGCTTCGGGTGCATAAGTTTGGTGCTGTGGGAT
TCGTCGTGCTTCACCGGTGCCTTCTTTGGTACAAATATGATGATCAAGGTTTTCACATAACGCTGGATTAGCAGTTTGTG
GAAGTGTCATTTTCAACAAGCGCCCAAGGAATGATATGGATAGGG-----TGGTGGTGGTATT----------AGGTACT
TTTCGATATTTTGCCAGAGTCTA--------AGCGTTTGTATAGATGAATTTTAGATGGCAGAGAAAA-CCTTCCAGTGA
TATAAGATTTCGCTTCCTATGAACAGGCTAGTTTTCTCGCGCTCTTACAATTGCAACCGCTTTATCGTATATATAAACCG
GCAAATC-TTGGTTCGATTAGATCAGCTTTCAGACACTATACTTGTTGCTTTGCTCAGCCCTGGAGCAGC--------AC
CGCGAATGTCTCAGTCCCTTGCAGCTCAAGCTGCACCTGAGCCCACTCAACGAGCACTTTGAAGAAAAAAGCCATTGATC
AGTCACCGTCCGAATATGCAACCGCATTCCGAAAGCTCCAAGGATCTTCCAAAAATAAAAAGGAGAAGCCCAAAGGAAGG
CACAGCACAGCAGAGGTGCAACCATCTCCACCCTCTT-CCCTGCCCCAAGTCAAGCAAGGAATCCCTTCTTCCCTCTCAA
-----CTTCCCTTATATTGCCAGCTCGATCGCACCGTGCTGCTATGCACTGGCGGAGCTTAGGCAAGGCCAAATGGGCCA
TGGCCCGCCCAGCTCTGCAGCTTTTTCTCACAATATAGCTAGCCCATGGGTTGTAGAATGCCAGCTAGTAGTAATTCCTT
GCAGCCTGGCCCATTCAGCCCGCCCAGCTTTTTTTGGCAAGCTCCGCCACTGCTGCTATGCATGAGCTGCGCCCGAACAA
TGGTGTGCATAGGCGTCGCCGAGTGCCAGCACGTCCACCGAACGGCGCTGGACTACTTCCTCGCTGTGCTCATCGTCGTC
GCGGCCGTCGTGGCGGTGAGGTTGCTCATCTGTGCCCTGGTGCGGTGCCTCAAGGACGGCTGCGTGGCGCACCACCACCA
CCAC---------AGCCCCGCGACCACCGACACCGACGAGGACATGGAGGTCTGGGCCGGCACGGAGCTGGATATCCATA
GGCATGCTGATCGGCATGTCCAGCAGGATCGTCGGCCGGAAGCCGTCGAGGTGGTGGTCCCACCGCCGGCTAGGACCACG
GCATAGGGTCCTAGCACGCTGACGCTGGCTACTTATTCTAC-------TGCTCGTATTCGTTAAGCT----------TGC
TTGCCCCATCCAGGTTAGTTAGTTTCG-----------------------------------------------------
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--------CTACACGTAGTTTGAGGTTTGAACACTTCTTAATCAAGTTATACGAATGGCAGCTATAGAGCGCGAGACTCA
AGGCATTGATTATTGCAATATTTGATCTCAGCCTTGTTTGTATCAGCAAATATATATCTTCTATGGATTTTGAAATAATA
ATCAAAATTGAGATTTAGTATCACGCATGTTTGTGAATATCAATTTACTAGAAACCAGTCGACTGGAAATTTAATTTTAG
TCAGTCGATTCGTTTCCAGCAGTTCCAGCCGTCCGATGAAAAATGAACGGCCAGATGCGCGTCTTCAACCTCCAGGCCAC
AGTCTTCTTCGTTTTGAACCAGCGGCCTAACCATCTGCTGTCACGCCCCCTTCCCAACTGCCGCCCACCGCCATGCTGCC
CCCCCCCCATCACTCTAACCCCTGCACCCCCACCCTAAGAGCATCTCTAGCAGACCCCGTAAAAAGCCACGACCCGCAAA
ATAACCGCCAAAATGCGGGCCGGCGCGGAAAAAGCTGCCCGATCAGACCCCGCAAACGCGTCCGACCCGTAAATATTTTT
AAGGGGCACGGCAAAATCTCGGCCCCAACCCGCGAATACGCAGGTTTCCGCCTCGCCCCTATGGTGCCCCGTATCCCAAG
AAAGCGGTAGGAGGGAGGGACATTTCAGCTTGCGCCCTTTCCCCACCTCCTTCCGCCGCCGCCGCCCACCATTGGTTCCG
CCAGTCCGCCGCCGGTGATTCCGGCCAAATCTGCGGACGGAATCGCGCCGCGAGGGCGCCGCCACCCTCTTCCACCGATA
AGCTGCACCCCCTGGATCCGGCGACATGAGCCGGCCCTGGTCGCCGTCGCTGCCGGGGTCGACCGCCCCCGAGCCGCTCC
TAGTTGCGGTCGCTGCCCGGGATCGCCCGCCCCCCGAACCGCCG
>chr7D_1
TTAGGTCAGCAGAGGTGATTGGCAACAGATTGGTCGGATCTGTCGCTGGTTTTGACCGCCCAATTGAAGTTTACTACAAA
TGATGGAATGGGATTG-----TGCCTCTTGCTCAGAGGCTCATGTGGTGCTTCGTGTGCATAAGTTTGTTGCTGCGGGAT
TCGCCAAGCTTCACCGGTGCTTTCTTTGGTACAAATATGATGATCAAGGTTTTCACATAACGCTGGATTAGCAGTTTGTT
GAGGTGTCATTTTCAACAAGCGCCCAAGGAATGATATGGATAGGG-----TGGTGGTGGTATT----------AGGTAGT
TTTCGATATTTTGCCAGAGTCTA--------AGCGTTTGTATAGATTAATTTTAGATGCCAGAGAAAA-CCTTCCAGTGA
CATAAGATTTCGCTTCCTATGAACATGCTAGTTTTCTCGCGCTCTTACAATTGCAACCGCTTTGTCGTATATATAAACCG
GCAAATC-TTGGTTGGATTAGATCAACTTTCCGACACTATACTT-TTACTTTGCTCAGCTCTGGAGCAGC--------AT
CGCCAATGTCTCAGTCCCTTGCAGCTCAACCTGCACCTGAGCCCACTCAACGAGCACTTTGAAGAAAAA-GCCATTGATC
AGTCACCGTCCGAATATGCAACCACATTCTAAAAGCTCCAAGGATCTTCCAAAAACAAAAA--AGAAGCCCAAAGGAAGG
CACAGCTCAGCAGAGGTGCAACCATCTCCATCCTCTCACCCTGCTCCAAGCCAAGCAAGGAATCCCTGC-TCTCTCTCAA
-----CTTATCTTATATAGCCAGCTCGATCGCACCAAGCTGCTATGCGTGAC----------------------------
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----------------------------------------------------------TGCATGAGCTGCGCCTGGACAA
TGGTGTGCATGGGCGTCGCCGAGTGCCAGCACGTCCACCGAACGGCGCTGGACTACTTCCTCGCCGTGCTCATCGTCGTC
GCGGCCGTCGTCGCGGTGAGGCTGCTCATCTGCGCCCTGGTGGGGCGCCTCAAGGACGGCTGCGTGGCGCACCACCACCA
CCACCA------CAGCCCGCCGACTACCGACACCGACGAGGACATGGAGGTCTGGGGCGGCACGGAGCTGGATATCCATA
GGCATGCTGATCGGCATGGCCAGCAGGATCGTCGGCCGGAAGCCGTCGAGGTGGTGGTCCCACCGCCGGCTAGGACCACG
GCATAGGGTCCTAGCACGC------TGGCTACTTATTGTAATTTGTAATGTTCGTATTTCCTCGCAAAAAAATGTACTGC
TTGCTCCATCCAGGTTAGTTAGTTTCATTTTTTTTTTTTGCGGGGGAGGTTAGTTAGTTTCATTACACGAGAGCGGATTA
TCTAGCCCGTGCATGTTCTGCGCCGTGGTCAGGTTATGTGTCAGAACCATTTGTAGTGTCAGGTCCATGCGTGCCCCACC
TCTCTCTATAACTCCATCCCAGAAATATGTCCTCTTATTTCTTGCTATGTAAACAAATTAGATGCCTGATATCTTGTGAA
ACAAAAGTTTGATTTACATTTTATTTGGACAAATGTGTTTATTCCGACGAGATATTCAAAACAAGACCAATATTGAATAT
ATTACTAAAAATAATATTTTTTTACAAATATATTCAAGAGTGGTCTTTTTTCGAAGTCCTAACTTAAGAACACAAGTATG
CAAACGAATTGGAAATCAAATTTTCAGTTCAAAAGCTAAAATGGATTCTAACATTAAAATCAATGGTACGGAAAAGGAAA
ACGTTGCGAGCCGACAGACCGGCCAAGCTTTCGGCCAGCTCGCGAGCCATGCTGGCAGCTCCAACCCCCACGAAACAAAC
CCCCGCATAAGACATGTGTACGCGGTGGACCTCACACAACCGCCCCCTACTCCTATCCTTATCCTTTCCCTGGACTTTCC
TTTTGGCTTTTCTTCAATCTCCAGCCGCGGCATCCTCTGCTCTCCAGAACCACGATTTTCTCTCCTCTACGCTGCTCATG
AACCAACACAAGCTCCCCTCACCGGCGGCCATTGTTTGTCGCAACCAGTAGCTGCTAGCGGGGGAGACCGGGGGAGGGGA
GGGGGGGCTCTGGATATGCTGGAACCAGAGTCCACGGCTCCACGCGTGCTGCAACCAGCACGGCCGGCGGTGAAGACGAC
GAGCTCCGATGCTGCAACTAGAGATTTTTATTGCTGGAACCAGACGGCAAAAAAGCTGCAACCACTTTTGGCAGGTGCTG
GAACCGGACGGCGTCGAGTTCGTTTTTGCTGGAACTGGCAAGAAAAATTGTTGGAACCGACAAGATTTTTTGCTGCATGG
GCAGGTGAGAGTTCTTGCTATGACCGGCGGCGGCGATGTGCTTTTGCTGGAAACATGGATATTTTTTGCTACAACCCACA
TGTGTTTTTGCTACTGCCGGCAAAATCAATAGATTTTTTGCTTTGGCTGAGATTTTCTTTTTTGCAAGGGAACACGATGG
TCTGAGCGGACGACGGCGACGAGCGGAGGCGGTGATGCGTGGAGATGATGCAACCACAATGGGTGCGAGCTGGAACAGGC
CGGTGGGTGAGTTGCAGTCACCCACCGGGGACGAGCGCGGTCGACACGGGTGGCCGGCGAGCAGGAGCGGCAAAACGGCG
GGCATGGGTGGCTTGGGGTCGCCGGCGAGCGTGGGTTGCAAGGGGGACGAACGCGGCAGCCGGCGAACACAGGGGATTTC
TTTTTGTTTCCAAATCACGCGCTTTGACAGAAGGGAGGAAGGAGAAGGACCCGGATCTGACGGTCGTAACAGAGCAAATC
GGACGATAGGGCAGCGACCGGCCCAAATTTGGGCCGGCGCACCGGCCCCTATCATTGCCCTACGGAAAAAAGCATGGGTT
GGTGAGAGGAGAGAGGTCACATGAAAAGGAAAAGTTAACAGTGTGAAAAAAAGTGATCGGTTGATGTGACCCATTTGACA
TGCATGAACACGAATCTTCATCATGCATGATCAACAGCCAATGCATGCACGGGATGTCCCATGCATGGTAGATATATTTT
TCTCTTCACTACACGTAGTCTGAAGTTTGAACACTTCTTAATCAAGTT--ACAAATGGCAGCTATAGAGCGCGAGACTGA
AGGCACTGATTATTGCAATATTTGATCTCAGCTTTATTTGTATCAGCAAATATATATTTTCTATGGATTTTGAAATAATA
ATCAAAATTGAGATTTAGTATCACGCATGTTTGTGAATATCAATTTACTA------------------------------
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>chr7B_3
--AGGTCAGCAGAGGTGATTACCAACAGATTGGTTGGTTCTGTCGCTGGTTTTGATCGCCCAATTGAAGTTTACTACAAA
TGATGGAATGAGATTGACGCTTGCCTCTTGCCCAGAGGCTCATGTGATGCTTCGGATGCGTAAGTTTGGTGCTGCGGGAT
TTGTCGAGCTTCACCGGTGCTTTCTTTGGTACAAATATGATGATCAAGCTTT-CACATGACGCTAGATTAGCAGTTTGTG
GAAGTGTCATTTTCAACAAGCGCCCAAGGAATGATATGGATAGGG-----TGGTGGTGGTATTGCCTTCCCTAAGGTAGT
TTTCGATAATTTTGTCAGACTTTAGGCAATTAGCCTTTGTGTAGATGAATTTTGTATGCCAGAG-AAA-CCTTCCAGTAA
TACAAGATTTCTGTTCCTATGAACATCCTAGTTTTGTCGCAGTTTCACAATTGCTACCAGTTTATCGTATA----AACAG
GCATATCTTTGGGTCGATTGGATCAACTTTCAGACACTATAGTTG---CTTTGCTCAGCTCTGGAGCAGCCGAGGAGAAT
CGCCAATGTCTCTGTCCCTTGCAGCTCAAGCTTCACCCTAGCCCACTCCACGAGCAATCTGCAGAAAAA-GCCATTGATC
ACTCACTGTCCGAAGATACAACCACATTCCAAAAGCTCCAAGGATCTTCCAAAAATAAAAA--AGTAGCCCAAAGCAAG-
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>chr7A_3
--AGGTCAGCAGAGGTGATTACCAACAGATTGGTCGGATCCGTCGCTGGTTTTGACCGCCCAATTGAAGTTTACTACAAA
TGATGGAATGAGATTAACGCCTGCCTCTTGCTCAGAGGCTCATCTGTTGCTTCGGGCGCATAAGTTTGGTGCTGCGGGAT
TCGTCAAGCTTCACCGGTGCTTTCTTTGGTACAAATATGATGATCAAGGTTTTCACATAACTCTGGATTAGCAATTTGTG
GAAGTGTCATTTTCAACAAGCGCCCAAGGAATGGTATGGATAGGG-----TGGTGGTGGTATTGCCTTCACTA-GGTGGT
TTTCGATACTTTGCCAGAGTTTA--------AGCGTCTGTATAGATGAATGTTAGATGCCAGAG-AAAACCTTCCAGT--
-----GATTTCGCTTCCTATGAACAGGCTAGTTTTCTCGCGCTCTTACAATTGCAACCGCTTTATCGTATATATAAACCG
GCAAATC-TTGGTTGGATTAGATCAACTTTCAGACACTGTACTTGTTACATTGCTCAGCTCTGGAGCTGC--------AT
CGCCAATGTCGCAGTCCCTTGCAGCTCAAGCTGCACCTGAGCCCACTCCACGAGCACTTTGAAGAAAAA-GCCATTGATC
AGTCACCGTCCGGATATGCAACCACATTCCAAAAGCTCCAAGGATCTTCCAAAAATAAAAA--AGAAGCCCAAAGGAAGG
CACAGCTCGGCA------CAACCATCTCCATCCTCTCCG-CTGCCCCAAGCCAAGCAAGGAATCCCTTC-TCTCTCTCAA
CTTATCTTATCTTATATAGCCAGCTCGATCGCAGCGAGCTGCTATGCATGAC----------------------------
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----------------------------------------------------------TGCATGAACTGCGCCTG-ACAA
TGGTGTGCATGGGCGTCGCCGAGTGCCAGCACATCCACCGGACGGCGCTGGACTACTTCCTCGCTGTGCTCATCGTCGTC
GCAGCCGTCGTCGCGGTGAGGCTGCTCATCTGTGCCCTGGTGCGGTGCCTCAAGGACGGCTGCGTGGCGCACCACCACCA
CCACCACCACCACAGCCCGGCGACCACCGACACCGACGAGGACATGGAGGTGTGGGCCGGCACAGAGCTGGATATCCATA
GGCATGCTGATCGGCATGGCCAGCAGGATCGTCGGCCGGAAGCCGTCGAGGTGGTGGTCCCACCACCGGCTAGGACCACG
GCATAGTCCTAGC--------ACGCTGGCTAGTTATTGTAC-------TGTTCGTATT----------------------
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>chr7A_3
--AGGTCAGCAGAGGTGATTACCAACAGATTGGTTGGTTCTGTCGCTGGTTTTGATCGCCCAATTGAAGTTTACCACAAA
TGATGGAATGAGATTGACACTTGCCTCTTGCCCAGAGGCTCATGTGATGCTTCGGGTGCGGAAGTTTGGTTCTGCGGGAT
TTGTTGAGCTTCACCGGTGCTTTCTTTGGTACAAATATGATGATCAAGGTTT-CACATGACGCTAGATTAGCAGTTTGTG
GAAGTGTTCTTTTCAACAAGCGCCCAAGGAATGATATGGATAGGGAAATTTTGTCGGGGTTTTGCCTTCCCT-AGGTAGT
TTCCGATAATTTTGTCAGACTTTAGGCAATTAGCCTTTGTGTAGATGAATTTTGTATGCCAGAG-AAA-CCTTCCAGTAA
TATAAGATTTCTGTTCCTATGAACATCCTAGTTTTGTCGCGGTTTTACAATCAC--------------ATA----AACAG
GCATATCTTTGGGTTGATTAGATCAACTTCCAGACACTATAGTTG---CTTTGCTCAGCTCTGGAGCAGCCGAGGAGAAT
CGCTAATGTCTCTGTCCCTTGCAGCTCAAGCTTCACCAAAGCCCACTCCACGAGCAATCTGCAGAAAAA-GCCATTGATC
ACTCACTGTCCGAAGATACAACCACATTCCAAAAGCTCCAAGGATCTTCCAATAATAGAAA--AGAAGCCCAAAGCAAG-
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>chr7D_191
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------------------------------ACAAATATGATGATCAAGGTTT-CACATGACGCTAGATTAGCAGTTTGTG
GAAGT-TCCTTTTCAACAAGCGCCCAAGGAATGATATGGATAGGG-----TGGTGGTGGTATTGCCTTCCCTA-GGTAGT
TTTCGATAATTTTGTCAGACTTTAGGCAATTAGCCTTTGTGTAGATGAATTTTGTATGCCAGAG-AAG-CCTTCCAGTAA
TATAAGATTTCTGTTCCTATGAACATCCTAGTTTTGTCGCGGTTTTACAATTGCTACCAGTTTATCATCTA----AACAG
GCATATCTTTGGGTCGATTAGATCAACTTTCAGACACTATAGTTG---CTTTGCTCAGCTCTGGAGCAGCCGAGGAGAAT
CGCCAATGTCTCTGTCCCTTGCAGCTCAAGCTTCACCCGAGCCCACTCCACGAGCAATCTGCAGAAAAA-GCCATTGATC
ACTCACTGCCCGAAGATACAACCACATTCCAAAAGCTCCAAGGATCTCCCAAAAATAAAAA--AGAAGCCCAAAGCAAG-
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>SNPs
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--------------------------------------------------------------------------S-----
------S-------------S-----------------------------------------------------------
------------------------------------------------------------------------------S-
----------------------------------------------------------S---------------------
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-------------------------S---------------------S-----------S-------------------S
---S-----------------------------------------------------------------S----------
-----------------------S------S------------------------------SS-----------------
------S-----------------------S-----S-------------S------------------S--S-------
--------SS-------S------------------S-----------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------S-S----
----------S---------------------------------------------------------------------
-----------S---------S----------------------------------------------------------
------------------S-------------------------------------------------------------
------------------S-------------------------------------------------------------
-------------------SS----------------S------------S-------SSS-SSSSS-------------
----S---------------------S-----------------------------------------------------
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-------------------S---S------------------------SS--S-------------------------S-
-----S--------------------------S--S---------------------S----------------------
--------------------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_757
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-----------------GCAACCATCTCCACCCTCTT-------------------------------------------
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>reverse_3513
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------------------------------------------------------------------------CAGGCCAC
AGTCTTCTTCGT--------------------------------------------------------------------
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