>input_sequence_84019
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------------------------------------------------------------ATGCAGATCTTCGTGAAGAC
GCCGACGGGGAAGACGGTGACCCTGGAGGTCGAGAGCACCGACACCATCGGCAGCGTCAAGGCCAAGATCGACGGCGAGG
AAGGCTTGTTACCGGAGCAGCAGCGGCTCATCTTCGGTGGGAAGCCGCTGGAGGACGACCGCAGCCTGGCCGAGTACGAC
GTCCACAAGGACTCCACTCTGCACCTGCTGCTTCACCTGCCCGGGGGGTTTCGCGGCGGCAGGGTTTGGTGCATCGAAGA
---CAGCCTCAGAGACCTCGCAGAAGACTACAACGTAAACAAGAAGATCTGCTGCAAGTAA-------------------
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>chr5B_1_TraesCS5B01G524500
TGTTCTTTCAATTTTTTTATCTGAAAATTCTTTAAATTCTCATTTAAAAAAATTATAACTGCTTTTAATTTCATGGACAT
TTTTTTGGAGCAGCAGAGCGAATATGAGATTAATGGGCCGAGGCCGAGTGCGTGTTTTGGGAGGTTTTTGATGGTAGGAG
GCTAAGAGCATAGGAGTTTCGCTACTTTTTTTTATTGAATACGCATGAACATGCGTATCATCACATTAAAGAAGGAGAGG
GAAAGAAGCCCGATACAAGGACTTTCGGCCATTATATAACGTTAATAACAAGAATTAGCCACTACACCCACCACGCACAC
CCACCCTACCTACTATGATACACGCTACCCTAGTCCAACCTCATGCCAATAGCGATGAGGCAAGCCATAGAGCAACCTAG
CCATGTCACAACCAACGCCGAGACCTATACAACCAGACCAATA-CCCAAAGCCAACACTAACCAACATACCGCCATCCAT
TTGCGCCTAGAGGGAGTCGGCAAGTGAACGGCAGGGCCTGAGCGGACCTAGTGAGGGTGTCTCCGGCCGAGAGAGCGACG
GCGATAGCGTACATTGCGCCCAGGATGCCTACGCCTAGAACAGCGGCCGACCATGACTCAAGCC-CACCATTGAGACTCC
TGGAGCAACAAGACGGCACCTTCAAAAA-AAAATGATGCTATGACGCCGCCGCCGCCT---GGTCCGGTGGCCGGAC---
--CAAAGGTTTCCCTTGAGCTCGAGGAAGGGAGCCAGATCAGGGCCAAAACAACGCGTCTGGGGAGTTTTGCTACTTTTT
TCCTTAAAAAAAAAGTTTTGCTACTCGGTAACTTGACGGGCGCGCTTCCTCTTTTAGTAGAATTAAAAAAACGAATT---
------TTAGTAGTTGACGGACGGGGAACGTCCTGAGCGTGGCCGCTGGCCAGGACTATATTATTAGCCCGAGCTCACGG
AACCGAACGGGACCAGAACCAAGAACACAAGAAGACTCGAAGCACGAAAAGCCAATCGAGATGCAGATCTTCGTGAAGAC
GCCGACGGGGAAGACGGTGACCCTGGAGGTCGAGAGCACCGACACCATCGGCAGCGTCAAGGCCAAGATCGACGGCGAGG
AAGGCTTGTTACCGGAGCAGCAGCGGCTCATCTTCGGTGGGAAGCCGCTGGAGGACGACCGCAGCCTGGCCGAGTACGAC
GTCCACAAGGACTCCACTCTGCACCTGCTGCTTCACCTGCCCGGGGGGTTTCGCGGCGGCAGGGTTTGGTGCATCGAAGA
---CAGCCTCAGAGACCTCGCAGAAGACTACAACGTAAACAAGAAGATCTGCTGCAAGTAAGTTTATGATGAATCTGCTG
TTAAGATCGCTTACCTTTCCTAGACTTAGTCAGATGAATGAATTAATTTTATCATCGTTTATGCTTATATTGCATCTCAG
CGTCGTCTTGTATGAATGTTGCAGGTGCTATGCTCGGCTACCTCTTAGAGCTACAAACTGTCGCAAGAAAAAGTGTGGCC
ACAGCAACCAGGTGAAACTTAATTTTCTCCCAGTCATGTTCTTGGCCGGTCCGGTCTTGTCATTTTTGGCAGCTCAACAC
TGATTAATAAAAATAAAATAAGGGGTAGAACTGATGCATATGCATTTTGCTCAACCTGTGTGTCATTCACAGCTGAGGCT
AAAGAAGCCCTGGAGGAACTTCTACTGAAGCTAGCGTCAGGTAGGCGCCACTGAATCGACCAATCTCTCAGTGCTAGCTA
ATTATGTAGTTATGGCCAAGGTTTTGGTTACTGAACGAGGCAATTTTACCGAGGGTGATGGGTAAACGTGGTTACCACGG
TTACTGGGAAATACCGAGAATATTTTGAACGAATTTTATAGTTGAATTTTGAATTCAAATAAATAAATGAACGAACATTC
GAACCAGAGACCTGTCAAAACAGGAACTAGGTTGCTACGAACACGTCAGAATCAAGTCTAATGGCATTAATTAGATCCTA
TACACTTTACTACAAATGGAGTTTTTAAATTCAAAAATTTTTAAAATGGTATTTTTTGGTCGGTATGAGGATTTATCGAG
GGGCACAGAAATATGCAGTAACCATGGGAAATCTTGAAATTTCGACCGGTAACCAAAATCTTGGTTATGGCAATTCAGAA
TTGGAGGTTTAAATTGTACATGTGACGCCCGGGTAATCAAGCTACAGTAACCCTCTGGTA--------------------
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-------------------------------ATGATGCCATGTCACCTCGATTACTGTTGATAATCTCGCGTTAGTTCAG
AACCGATCCAAATTCAAATTTGAATTTGAGTCAAAACAATTAAAGTTTTCAAAAGTCAAAACTAAATTGTTC
>chr2D_184
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------ACTTTTTTTTCTCGAATACGCATAGGCATGCGTACCATAGCATTAAAGAAGAAGCAG
CAAAGAAGCCGGATACAAGGCCTTTCAGCCATTAC--AACGCTAATCACGAGAATTAGCCT---------TCACGCACAT
CCATTCTGGCTACTATGATACATGTTTTCCTAGTCCAACCTCATGCCAATAACAACAAGGCAAGCCACAGGGCAACCCAG
CCACGTCACAACCAACGCCGAGACTTCTACAACAAGACCAAAATCCCAAGGCCAACACAAACCAACGTACCGCCACCCAA
TTGCGCCAAGAGGAAGTCGGCAAGTGAACGGCAGGGCCTGAGCAAACCTGGGGAAGGTACCGT----CGTGAGAGCGCCG
GAGATGGCGTACATTGCGCCCAGGAGGCCCACGCCCAGAGTGGCAGCCGACTC--ACTCAAGCCACACCAACGAGACTCC
TCGAGCAACAAGACGACGCCTTCAGGAAGGTAACAACGCCTTGACGCCGCCGCCGCCGTCCGATCAGGAGGCCAGACCAA
GACAAGGGTTTCCCCCGAGCTCGAGGAAGGGAGTCTGATCGTTTCCAACACAACGC------------------------
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>chr5D_189
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----------------------------TTTTTCTCGAATACGCACAAGCATGCGTATCATCACGTTAAAGAAGGAGCGG
CAAAGAATCCGGATACAAGTCCTTTCGACCATTAC--AGCACTAATCACAAGAATTAGCCGCCACACCCACCACGCACAC
CCACCCTACCTACTATGATACATGCTACCCTAATCCAACCTCAAGCCAAT-GCGATGAGGCAAGCCACAGAGCAACCAAG
CCGCGTCACAACCAACATCGAGACCTCTACAACCAGACCAAAA-CCCAAAGCCAACACAAACCAACATATCGTCACCCAT
TTGCGCCAAGAGGGAGTCGGCAAGTGAACGGCAGGGCCTAAGCGGACCTAGGGAGGGTGTCAT----CGAAAGAGCACCG
GCGATAGCGTACATTGCGCCCAGGATGCCCACGCCCAGAACAGCGGCCGACCATGACTCAAGCC-CACCATGGAGACTCC
TCGAGCAACAAGACGGCGCCTTCAAGAAGAAAATGACGCTATGACGCCGTCGCCGCCT---GGTCCGGTGGCTGGAC---
--CAAAGGTTTCCCTTGAGCCCGAGGAAGGGAGCCAGATCAGGGCCAAAACAACGCCTCT--------------------
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>chr7B_197
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------------------------------------GAATACACACAAGCATGCGTATCATCACATTAAAGAAGGAGCGG
AAAAGAAGCCGGGTACAAGGCATTTTGGCCATTAC--AACGCTACTCATGAGAATTAGCTGCCGCACCCACCACACACAC
CCTG----CCTACTACGATACATGCTTCCCTAGTCCAACCCCATGCCGATGGCGATGGGGCGAGCTTCAGAGCAACCAAG
CCGCGTGACAACCAAA-CCGAGACCTCTACAAAAAGACCAATA-CCCAAGTCCAACACAAACCAACATACCGCA--CCCA
TTGTGCTAAGAGGAAGTCCGTAAGTGAACGGCAGGGCCTAAGCAGGCTTAGGGAAGGTGCCAT----TGAGATAGTGCCG
GTAATGGCGTACATTGCGCCTCGGAGGCCCCCGCCTAGAGCAGCAGCTGACCATGACTCAAGCCACACCGATGAGACTCC
TCGAGCAACAAGACGACGCCTTCAAGAACGAAATGCCGCCATGACGCAGCCGCCGCCT---GGTCTGGAGGCCGGAC---
--CGAGGGTTTCCCCCGAGCTCGAGGAAGGAAGCCCGATCTGGACCAAAA------------------------------
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-----------------------------ACAACGC--------------------------------------------
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>chr2D_211
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--------------------------------------------------ATGCGTATCATCACGTTAAAG---GAGCGG
CAAAGAAGCCAGATACAAGGCCTTTCGACCATTAC--AACGCTAATCACAAGAATTAGCCGCCACACCCATCATGCACAC
CCACCCTACCTACTATGATACATGCTAACCTATTCCAACCTCAAGCCAATGGCGATGAGGCAAGCCAGAGAGCAACCAAG
TCGTGTCACAACCAACGCTGAGACCTCTACAACCAGACCAAAA-CCCAAAGCCAACACAAACCTACGTACCGCCACCCAT
TTGCGCCAAGAGGGAGATGGCAAGTGAACAGCACGGCCTAAGCGGACCTAGGGAGGGTGTCGT----CGAAAGAGCGCCG
GCGATAGTGTACATTGCGCCCAGGATGCCCACGCCCAGAACAGCGGCCGACCATGACTCAAGCC-CACCATTGAGACTCC
TCGAGCAGCAAGACGGCGCCTTCAAGAAGAAAACGACGCTATGATGCCGTCGCCGCCT---GGTCCGGTGGCCGGAC---
--CAAAGGTTTCCCTTGAGCTCGAGGAAGAGAGCCAGATAAGGGCCAAAACAATGCCTC---------------------
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>chr5B_809
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-------------------GCTCCTCGGTAACTTGACGGGCGCGCTTCCTCTTCGAATCTAATACGGGTAAATCAAAGAA
ACTGAATTAGTAGTTGA-----GGGAAACGTCCTGAGCGTGGCCGCCGGCCGGCTA-----TATTAGGCCGAACTCACGG
CACGGAACCA----------AAGAGCACAAGAAAACACCAACG--GAAAAGCCAACCAGGATGCAGATTTTTGTGAAGAC
GCCAACGGGGAAGACGGTGATCCTCGAGGTCGAGAGGACGGACACCATCGGCAACGTGAAGGCCAAGATCGATGGTGAGG
AAGGTGTGTCGCCGGAGCAGCAGCGGCTCATCTTCGGCGGGAAGCCGCTGGAGGACGACCGCAGCCTGGCCGAGTACGAC
GTCCACAAGGACTCCACTCTCCACCTGCTGCTTCATCTGCCCGGCGGGTTTCGCGGCCGCGAGGGTGGTTGGTTTACGGA
CCCCAGCATGAGAGCCCTCGCAGAAAGCTACAGCCGAAACAAGAAGATCTGCCGCAAGTACGT-----------------
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>chr1D_2158
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--------------------TGTGACGCCCGGGTAATCAAGCTACAGTAACCCTCTGGTAATGATGCCATGTCACCTCGA
TTACTATTGATAATCTCGCGTTAGTTCAGAACCGATCCAAATTCAAATTTGAATTAAAGTCAAAACAATTAAAGTTTTCA
AAAGTCAAAACTAAATTGTTCCTAATGTGTCAAATAATCCGTAATAAATGTTGGTGAAGAAATCATCTTTTAATAAAATA
CTTAAATGCACTAAATAAACTAAAACAACGATAAAACAATTATCTAAAATGCTTTTAAAGTAATAAGCAAATGCAAAATA
CTTTATTTAAAGTGCCAAAATATTTGGGGTTTTGACCTAATTAATAACACCAAATTAGTTGTCGCTTTTAAATTTTATAA
AACTAAAATAAAAGAAAATAGAAAAGAAATAGAATAAAAAAATCAGAACAAAAAAAAAGGAAAAGACCCCGTGGTATCTT
GATAATACTCGTCGGACCAATGCACCCTTCCAACCTCTATTATGATCACCTTCGAGTATTACCCCGTGGTATCTCGATAA
TATAACATAACCATATTACTTATGAGTTCTTCAATGGATTATTTCTCACCGATTCCAATTATCCCCCGGGTTCTGAGTTG
TTAGACACTCAAGGACACCGATAAGTGAATCAATTCCGCACTCCGATTCAATAACTCTAAGCAACCTTCGATGCTTATGA
GTTTATTAATCCTTCAAGTCATTCCTAGCCTGATCGGCTACATCATTATCGTGCTAAATTTTAACTGTGCCACCCGGTCC
TTATTCCCAGAGCACAACATTCGACGATGAGCTCAGCTTACGTCGATTTTCCTTGTCATATCATTTCACCTTGAATAGCA
AGCTTGATTTCAAGCATGTGTCATACCCTTGGTTCCAATAACTTTTCGCTTCACCATTCCTTTGACTTGATGTCATTGCC
GATCTATTACATCTTCAAGAAACCTCTCGACAAGTGTGTCGTGATCATCATCAACATTTTAACTTCTTCCGAGATATCAA
TTGAATTCATGATGAGAAATTCAATGCTTGCCCCTTGATGATCTGTGTTATCATCGACCACATCTATGCCTTCCTTTCAA
ACACAGACTTGGTCTTGTTTTGAATGAACTTTAAGTTCCTGGCTATCCAGCTTATCTTATGTCCTACCTTGAAGTAATAC
CATCTTATATATTAAGAATGTTGTGAGAATTTCACCACCTCTTAAGAATTCTTGATAAAGGTGATACTTCTTGCCATATC
CGTTCATTCCTTTCAAAACTTCTAGCAACCCTATTGCTTTGAAGTTAATGGTCGATAATTCATTCTTAGACTATTGATTA
TTGAATCACCATTCCGACGTTGGTCGCGCAACCCAGCCCATATTTCGGGTGCACCCTTCAACCAATGTTTACTTGTGTAT
GTTTTCCTCGAGCATTCATCATTATACCATTTGATCTGACAAATGTTATCTCCTTGTTCACATAGTTGTGGAAATCCATC
TTTTGTTAATCTCGATGAATTGTTGCTGAGTTCATCAGCTACCACCTTATCCCTTCATTGGTTTAATGATGAGCTCTTAT
TTCGGAACTCGCTTCCGTGGTAAATTTCCCGAGAATCTTACAATGTCGTCTAAGACTTATTCTATAAATTTTCCGATGGA
TCCTTTGTATACAAAGTCTGACCTTTGCTTGAATACCTTGTCAATGCTATCTCAAAGCATGTCACTGGTACTCCGATTTT
CAGTAAGAACATTTGAAGCAAGATGCTAAATTTTCTTTATCAATTATCCAAACACCATTGTATGGGTCATGTCATGAAAT
TCCTCTCCCATTACCTAAATGGTTTTCTACTTTCTATCCTGTCATGGATATCATGCTCTGCTTGTTCTTGGGAAGGATAT
ACCCCCTGAAATAAGTGTTTAAACACATTTTCCTTTCCATTGTTCTGTTTAATCTGATGATCACATTTTCCTTTCGATTG
TTTGGTTGAACTTTCTTGTGATCTATATGATCTAAGCAGTAATATTCTTCTGCTTATGTAAACACCTTGATGTACAACCG
TGTCAGTAAGACCCTGTTACTTTTGTTGGTGACATTCCGGTAACCACCGATGGACGAGAACTTTGCCTATTGGTCCGCCT
CGTTTCAACGAGCAGGAAAATGGTTCTCTTCGTCCCTCGCCCTTGGTACCGACGATGTTGCTGACATATAACTGACAGGC
TACCCTCTGACATGCCTTGCTATCATGATCGTGCAAGATGTCACCGCCCTTCCTACTTTAACCACATGGTGGGCCCATAA
CCCACAGTTCCATAGGATCAAAACCTGACTCTCCTGTGCACCCCCTATTCCCAAATTTATTCATCGCGCGTGGCCTCGTA
TGTAATTCACGGACCACCGTCCTACTGATCTATACTGGCATCAGACATAATACTTATTCCGATTGCTTTGAACCCCTTTC
ACACTCTGTTTCAGGCATCGAACGATTGCCTGCCGCTTGAAACTTCTCATGACACCTTCTTGCCTTACTCTCGATATTTT
CTAAAGGTTTTTAATTCAAGATTTACTTCCCCCACCTTCCCCGATGTTATCAACAAGTTAGTCAACCTTGCAGAGGTCTG
TTCTCCCAGCCCCTTTATTCTTTCGTAAGTACGATGGAGTTCCCAAAGAAAGGATGCCAACTTCATCATGAGAACTTGAA
ACAGAGAACTAAAGACATCAACGAAAAGGATCGACTACTTCGGGAAGAGCAATCAAGACCGAGAAGATTCGTTAGAATTT
TGTAACCAAATCTTTCCCCCTTACACTACCACTTAAATCTCGGGACGAGATTTCTTGTAGTGGAGGAGAATTGTGACGCC
CGGGTAATCAAGCTACAGTAACCCTCTGGTAATGATGCCATGTCACCTCGATTACTATTGATAATCTCGCGTTAGTTCAG
AACCGATCCAAATTCAAATTTGAATTAAAGTCAAAACAATTAAAGTTTTCAAAAGTCAAAACTAAATTGTTC
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSS----------S-S----------S-S----------------------------S--
S---------S---------S-------------SSS----S----S-------------S-S-----------------
----------------------S--------------------------------------------S---------S--
--------------------------S-------------------------------S----------------S----
-------S-------------------------------------------S---------SSSSSS----------S--
-----------------------------S--------------------------------------------------
-S---------------S-------S----------S-------------------------------------------
--------------------------------------------------------S---SSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSS---S------------------------------SS-S-SS---SSSSSS--SSS-SS---
-----------------SSSSS---S--------------------S----S-SSSSSSSS------S----S-------
S--S----SSSSSSSSSSSS----S--------S--S-S--SSSS----------S-SS---------S--S--------
---S----------------S---S-----------S--S-------------S---S--------------S--S----
----SS---SS--------------------------S------------------------------------------
--------------------S--------------S--------S------------S--SS--S-S-S--SS-SSSS--
-------S-S----S----------SS--------S----------------S-------S--SSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSS------------------------------------------------------------
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--------------------------------------------------------S-----------------------
--------------------------SS--------------------------------------------
>forward_124
--------------------------------------------------------------------------------
------------------------TGAGATTAATGGGCCGAGGC------------------------------------
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>reverse_1813
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----------------------------------------------------GGGTGATGGGTAAACGTGGT--------
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------------------------------------------------------------------------
