>input_sequence_83994
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-----------------------------------------------------ATGGTGACCAGGTGGAGCCAGAAGAGC
CCCGGCCTCAAGATCCTGTGGATCTGGACCCTGGGCACCGCCGCGAGTAAGCCACCCCATCCCCTCCCCTCCTCCCCGTA
TCCCTAGTCGTGCAATCCA---CCGCCGCCGCCGGCGCTGATTTCG-----CTGATTTCGCGCGCAGTCATGATCACCAA
CGTCGTCCGGACGCGCGTCAACGATATGCAGATGATCCTCCGGGAGGAAGACGAAGCCGCTGGCTCCGGCGGCGGCGGTG
GCGGCACCGGGGGCGGGGCCTCCGGCGAGCGCGTCATGAGAGACGACGAGTTGACTTGA---------------------
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>chr2B_1_TraesCS2B01G525700
CCGCCTGCTGCTCCCCTAATTCCGCCTCCGACGATGCAGAGGCGTCCCCGGCGGCTGCCCGTGGCCGCGTCTGTCCCCCA
CTCGAGATTGAGATCCTGGGATGGGGAGGGGTGGCAATGATGACAACCCTAGGCACGACGAGAAGAGAGAGGATCCCAAC
TGCCAAAAGGCCGGAGAAGAGAAGTACCTGCTCGTCCCGAGCGCTCGCTTGACGAGAAGGAGACCTACGGGCGGAGGTCC
TTGCCGCTGCCGCAGACACGGTCGAGGTTGAGGTCGATGTCGGAGGCGGCGACGGAGACGGCGACGGAGACGGAGACGGC
GTCCACCTTCTCCAGTGGCCAGCGCTGGACGAGCAGGGATGGCGCCGGTGGCTGTAGCTGTGGCGGCGCCGG-GGAACCC
TAGCCGCCGGTCGGGATGGGAAAGAAGGAGAGGAGGTTGCGTTGGGAAAAAA-GAACTGCTCTCTCTTTTGTCCCCACCC
GTGGAACGACGCATTTTCTTTCCCC--CTCTCGTACACAGCCAGTACGCAACCTAGCTCCCTCGGCTCACAATGAGAGGA
ACTTAGGAGTAATATCACACACTCCAATACAACTTTGCTTATATGGCACATATTTAATGAAAAGAGAGGTGCTTGTGGTA
ACTAGCTAAGTTACCGGAACATCACACACTCCAAAAAACAGTGAGTCTATAACCTAATAAATACATCGTTGCATGATATT
ACATAGATGTTCCTACCCACTATAGAGGTAGTAACATAGTCTAGAGAAGTGTGTAAGTTACTAGCTTATGTTCTTGCCCA
TTGTGACCAGCCTAGTGGAGGGCCTTACTTCTCCTCTGGAAGCTGAATATTACAAAACAATCCTCATAAAACAAGCGAAA
TGTTACTCTGAGAAAA-CCCAAAGCCCTTGCTAACTT--------CGTCGTCCTCCAAGCCGGCCGAAAATCTGCCTGAA
ATCCGCGCCGCTCCCTCCAGCCCACCACCGCGCTCAAGTTCGTCGCGGCTCCAATGGTGACCAGGTGGAGCCAGAAGAGC
CCCGGCCTCAAGATCCTGTGGATCTGGACCCTGGGCACCGCCGCGAGTAAGCCACCCCATCCCCTCCCCTCCTCCCCGTA
TCCCTAGTCGTGCAATCCA---CCGCCGCCGCCGGCGCTGATTTCG-----CTGATTTCGCGCGCAGTCATGATCACCAA
CGTCGTCCGGACGCGCGTCAACGATATGCAGATGATCCTCCGGGAGGAAGACGAAGCCGCTGGCTCCGGCGGCGGCGGTG
GCGGCACCGGGGGCGGGGCCTCCGGCGAGCGCGTCATGAGAGACGACGAGTTGACTTGAGCAGGTATGGGATCCCACCTG
TGCCCCAGTGACCGAATCATGT---------TTATACAGCAGCT---AAAGTTAACGATTTAAGAATCGTATCATGTGAA
ATCCTGTTATTTTTCTTCTCTTGAGAGTGCATTTCAACGA----------------------------------------
----AGGTTAAA-GTCGATTCAATGATCGAAATAGGCCTCAGTCCGGAAC------------------------------
-------------------------------------------TGAATACTCCGGATGTGTTTCGTTTCATCGT------
CCTTATCGTGT--TAAATTGTTGTACTAGCTAGTTTATAAGGACACCATTGTGCTATA----------------------
----ATTTAGAGGTATCCCCTGGCCCCTGTC--TACAATTTACAAACCAGCTCTATTTCAAGTTCCTGATACTTCCGGTC
GACGTAATCCAGAGTACATTCTTCTCTTCGGCCTCTTAAGTATAAACATGGCCGTCCACGGTCCACGTAAGCGTCTTCTA
TCCATTTCCTTCATGGTAGCAATCATGCGTCAAAGGCTGCAATTTTAGCTAGATTTTGAGCCTTCCAATTCTAGCTACGC
AAGGTGTAAGGATCTATTTCTGGTGTTCTGAAAGTATGACATGG--------CAGC--CCAAGTTGATGGCATCTTAAGC
CCATCACACAGGATTAGTGCTAATGG----ATGGTTACATTATTCTTTCATCCATGTATGGCTGAATCTTAATTGATATC
TCA-TGAATCACCAACCTTTTCTCGAGTCATGTGACTTATGAGGTAAG---------ACCAAGAGTTGCCATTTGCCATA
GGGCCGG----CTATGTAGCCTAGAGCTATTTAGTCCAGATGGTTTCAAGCTGGCATTGATCCCGATTATCAAAA-CATA
CACTATTCCTGCATCAAGTTGTATTGCTGTGGTAGAAGCAATTTCATAGTTGTGCCATTTGCCATACGGCATGGATAGTT
GCAGCTGGTTCAAATGTCAGTGGAGAACTGGAGATTGAACCAGAGTGCAATGTAACAATTATGTTGCACAAGTCCTGGCT
GGGCTGCAACTAGGTGTTCCAAAGCATACACTCCACCGGTCACCTGAAACAGAA
>chr5B_1
CCGCATGCTGCTCTCCTAATTCCACCGCCGACGATGCAGAGGCGTCCCCGGCGGCTGCTCGTGGCCGCATATGTCCCCCG
CTCGAGATTGAGATCCTGGGATGGGCAGGGGTGGCAATGATGACAACCCTTGGCGCGGCGAGAAGAGAGAGGATCCCAAC
TGCCAAAAGGCCGGAGAAGAGAAGTACCTGCTCATCCCGAGCGCTCGCTTGGCGAGAAGGAGACCTACAGGCGGAGGTCC
TTGCCGCTGCCGCAGACACGGTCGAGGTCGAGGTCGATGTCGGAGGCGGCGACGGTGACGGCAACGGAG------ACGGC
GCCCACCTTCTCAAGTGGCCAGCACTGGACAAGCAAGGATGGCGCCGGTGGCTGTGGCTGTGGCGGCGCCGGCGGAACCC
TAGCCGCCGGTCAGGATGGGAAAGAAGGAGAGGAGGTTGAGTTGGGAAAAAA-GAACTGCTCTCT--TTTGTCCCCACCC
ATGAAATGACGCGTTTTCTTTCCCCCTCTCTCGTACACAGCCAGTACGCAACCTAGCTCCCT------------------
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>chr5B_1
CCGCATGCTGCTCTCCTAATTATGCCGCCGACGATGTAGAGGCGTCCCCGGCGGCTGCCCGTGGCCGCGTATGTCCCCTG
CTCGAGATTGAGATCTTGGGACGGGCAGGGGTGGCAATGATGACAACCCTTGGCACGGCGAGAAGAGAGAGGATCCCAAC
TGCCAAAAGGCTGGAGAAGAGAAGTACCTGCTCATCCCGAGCGCTCGCTTGGCGAGAAGGAGACCTACAGGTGGAGGTCC
TTGCCGCTGCCGCAGACACGGTCGAGGTCGAGGTCGATGTCGGAGGCGGCAACGGTGATGGCGACGGAG------ACGGC
GCCCACCTTCTCCAGTGGCCAGCGCTGGACGAGCAAGGATGGCGCCGGTGGCTGTGGCTGTGGCGGCGCCGACGGAACCC
TAGCCGCCGGTCAGGATGGAAAAGAAGGAGAGGAGGTTGCGTTGGGAAAAAAAGAACTGCTCTCT--TTTGTCCCTACCC
GTGGAACGACGCGTTTTCTTTCCCC--CTCTCT----CAGCCAGTACGCAACCTAGCTCCCTC-----------------
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>chr2D_833
TGGAAACTGA----------------------------------------------------------------------
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------------------------------------------------ATTACAAAACAATCCTCGTAAAACAAGCGAAA
TGTTACTCTGAGAAAA-CCCAAAGCCCTTGCTAACCT--------CGTCGTCCTCCAAGCCGGCCGAAAATCTGCCTGAA
-TCCGCGCCGCTCCCTCCGGCCCACCACCGCGCTCCAGGTCGTCGCGGCTCCAATGGTGACCAGGTGGAGCCAGAAGAGC
CCCGGCCTCAAGATCCTGTGGATCTGGACACTGGGCACCGCCGCGAGTAAGCCGCCCCATCCCCTCCCCTCCTCCCCGTA
TCCCTAGTCGTGCAATCCA---CCGCCGCCGCCGGCGCTGATTTCG-----CTGATTTCGCGCGCAGTCATGATCACCAA
CGTCGTCCGGACGCGCGTCAACGATATGCAGATGATCCTCCGGGAGGAAGACGAAGCCGCCGGTTCTGGCGGAGGCGGTG
GCGGCACGGGCGGCGGATCCTCCGGCGAGCGCGTCATGAGGGACGACGAGTTGAATTGATCAGGTACGGGAGCCCACCTG
CGCCCCACTGACTGAATTGTGTGATGAGCAGTTTTACAGTAGCT---AAGATTATCGATTTAAGAATCACATCATGTGAA
ATGCTGTTTTTTTTTTCTC-----GAGTGCATTTCAACAA----------------------------------------
----AGGTTAAAAGTCGATTCGGTGATCGAATTAGGTCCCAGCACGGAGC------------------------------
-------------------------------------------TGCATACTCCCAATGTGTTCATATTCACCGTGACCGT
GCTTATCTTGTTATAAACAGTTGTACTAGCTAGTTTATAAACACG-CACTGTGCTATA----------------------
----ATTCAGAGATATCCCCTGGCCCCTGT--GTACAATTTACAAACCAGGTCCATTTCAAGTTTCTGATACATCCGGTC
GACGTAATCCAGAGTACATTCTCCTCTTTGGCCACTTAAGTATAAACATGGCCGTCAACATCCAA--GAAGCGCCTTCTG
TGTA-TTCCTTCACGGTAGCAATCATGAGTCTCAGGCTGCAATTTTAGCTAGGTTTTGAGCCTTCCAAGTTCCAGCTGCG
TAATTGTAAGGATCTGTTTCTGGTGTTCTGAAAGTATGAGATGACACTTTAACAGC--CCAAGTTGACGGCATCTTAAGT
CCACCACACAGGATTGATGCTAATGGAGTAACGAGGACATAATTCTTTCATCC--------ATGAATCTGCACTGATATC
TTTGTGAAATACGAACCATTGCTCGAGTCATGTGGCTTACAAGGTTAG---------ACCAAGCGTTGCCATTTGTCATA
AAAGCTATCTACTATCTAGCCTAGAGCAATCTAGTGCAGATGGTTTCAAGCTGGCATTGATCCCGATTACTG-AA-CATA
GACTATTCGTGCTTCAAGTTGTAT--------------------------------------------------------
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>chr2A_873
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----------------------------------------------------------------------------GAAA
TGTTACTCTGAAAAAACCCCAAAGCCCTTGCTAACTCCGTGACTCCGTCGTCCTCCAAGCAGGCCGAAAATCTGCCTGAA
ATCCGCGCCGCTCCCTCCAGCCCACCACCGCGCTCTAGGTCGTCGCGGCTCCAATGGTGACCAGGTGGAGCCAGAAGAGC
CCCGGCCTCAAGATCCTGTGGATCTGGACACTGGGCACCGCCGCGAGTAAGCCA----ATCCCCTCCCCTCATGCCCGTA
TCCCTAGTATCGCAATCTACCGCCGCCGCCGCCCGCGCTGATTTTTTTTTTCTGATTTCGCACGCAGTCATGATCACGAA
CGTCGTCCGGACGCGCGTCAACGATATGCAGATGATCCTCCGGGAGGAAGACGAAGCCGTCGGCTCTGGCGGCGGCGG--
----CACGGGCGGCGGGCCCTCCGGCGAGCGCGTCATGAGGGACGACGAGTTGAATTGAGCAGGTACGGGAGCCTACCTG
CGCC-CACTGACTGAATCGTGTTATGCGCAGTTTTATACAGTAGCTAAAGGTTAACGACTTATGAATCGCATAATGTTTT
CGCGAATAAGCTAGGTACCTATCTTTGCATTGATAGGTAGAAAGAGTTTACACATCGGGAGTATTTGGAAGAGTTTACAG
TGATAGGCAGAAAGAGTTTACAGTGATGGAAGTATGTCCCAATGAATAGTCCCAATATGTCCCAGTGAATAGTCCCAATC
GAATCCTGTTAATTTTGAGTCGAGTGATCCAAATATGTCCCAATGAATAGCCCCAACGTGTTTTTACTCACCGT------
GCTTATCGTGT--TAAACACTACTCTGG----GTTTATAAACACA-CAACAGAGAGCGCGCAAGTCTTCTCTGTTCACAT
TTCCATTTAGAGGTATCCCCTGCCCCCCTCTGGTACAATTTACAACACAGCTCTATTTCAAGTGTCTGATACATTTAGTC
GGTGCAAACCTTTGTGCATTCTTCTCTTCGGCCACTCAAGTACAAACATAGCTATCTACAGTCCATGGTAGCACCTTCTA
TTTATTGCCTTCACGGTAGCAAGCACGAGACGTAGGTTGCAATTTTAGCCAGATTTTGAGCCTTCCAAGTTCCAGCTCGC
AA-GTGTAAGGATCTGTTTCTGGTGTTCTGAAAGTATGACATGCCACTGACTTAGCAGCCAAGTTGATGGCATCTTAAGT
CCACCACAGTCGATTGATGTTAATGGAGTAATGGTGACATGTTTCTTTCATCCATGTATGGATGAATCTCCACTGATATT
TTTGTGAAACACCAACCATTGTTCGAGTCATGTGGCTTACGAGATATAAGACCAAGCACCAAGCGGTGCCATTTGTCATA
AA---GG----CTATCTAGCCGAGAGCAATCTAGTGCAGATGGTTTCAAGCTGGCATTGATCCCGATTACTG-AAACATA
CACTATTTGTGCTTCAAGTTGTATTGCTCTAGTGGAAGCAA---------------------------------------
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>SNPs
----S--------S------------S-------------------------------------------S--------S
-------------------------S------------------------S------S----------------------
---------------------------------S-----------------S----------------S-----------
----------------------------S--------------------------S-------------SSSSSS-----
-S---------------------------------S-------------------S------------------------
------------S----------------------------------------------------SS-------------
------------S--------------------------------------------------SSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------------S--------------
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-----------------------------------S--S-----------------------------------------
-----------------------------S--------------------------------------------------
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------------------------------------------------------------S-----S-------------
-------S--S------S----------------------S-------------S-----------S----S--------
S------S----S-----S--------------S-----S---------S-------------------S----------
--------------S-S-SSS-SS--------------S-----------------------------------------
----------------------S--------S----S-S----S----S-------------------------------
-----------------------------------------------------SS--------SSS----S---------
S----------------SS---------------------SS---S--S-------------------------------
------------------------------S---------------------------------S-------S-------
---------------------------------S----------------------S--S-----S-S-----S------
-SS----------S-------------S---SS-----------------------------------S-SSSSSSS---
--S------------S---------------------------S-----------------------------------S
---S-----------SS------------------S----S--------------------S-------SS-S-------
-SS-----S--------S--S-------------S----S-----------------------S-----------S----
SSSS-----------S-----------S--S----S---------------------------------SSSS-------
--------S---S---------------S-S--S-------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_673
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-------------CCGGAACATCACACACTCCA-----------------------------------------------
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>reverse_1825
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----------------------------------------------------------------CCTGATACTTCCGGTC
GACG----------------------------------------------------------------------------
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