>input_sequence_83993
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----------------------------------------------------------------ATG---GCCTGCGCCT
TCTTCTTCGACGCGGAGCCGCTGGGCGAGCCCGGGCTGCGCCTGCACGGGCCGGAGCTGGAGCTGGACGCCTGCGCGCTC
TGCACCAAGCCGCTGCAGAGCAACAGCGACATCTTCATGTACAAGGGGGACACCCCCTTCTGCAGCGAGGACTGCCGCTA
CGAGCAGATGCACTTTGACGCCGCCATGGCCAGGCAGCAGGCCAGCGCCAGGCGGAAGCAGCAGCAGCAGCAGGCCCAGG
CGCAGCCCAGCGTGCC---------------GGCGCCGGCGCCCGTGTCCGCCAAGGCCGACGTGTCCGTGGCGAGCTAG
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>chr2B_1_TraesCS2B01G474700
TCCGAGCCAACGTGGCAAGTCAGCTCTAACCTCATGGCCCCTTGATCAGGGCGTCATGATGCCTACCATGACGCCTTGGG
GCCGGCCGTCATGAAAATGGGTCATTTTTGAAATTTAGTAATAA-TTTAAATAGGGTTCATTTTGTGCTTAATTTTGAAA
ATGGGCG-AATTTGTTGTTTTTCACTAGGAGACATGCCTCGTCGG------CAAAAGCAATAAAAAACACCGTGCTTCTC
AGGA----AAAAAAAAAACTACCGTGCAAGATCCTAGCAGAAAGCCCCTAGTCCCCTACCAGCCGCGCGTGTCACGATGC
AGTTAGCCTCGAGTCAAGTCCACTGCATCACTCATCTCATCCACTGGGAACTTCCCCAGCACACTTTCCGCGTGAAAGAC
TCCAAACCTTGGAGTCCCTACCGTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNAAGCAC--CACGTCACGGCCTCGAACCCTCTTGTCCTCCACCCTCCCCGCGGGTT
TATATGCCCGCCCCGTCCACCTCCTCTGAACCTCAGCTCAAGCGGAACCCGCACACCCTCGCTCTCTCCT-----TCTTC
TTCTTCTTCTTCT-CCCGAGCAAGAAGGAGGCTCTGCTCCGCGCAAGCAAG----CTCTGCCTCATG---GCCTGCGCCT
TCTTCTTCGACGCGGAGCCGCTGGGCGAGCCCGGGCTGCGCCTGCACGGGCCGGAGCTGGAGCTGGACGCCTGCGCGCTC
TGCACCAAGCCGCTGCAGAGCAACAGCGACATCTTCATGTACAAGGGGGACACCCCCTTCTGCAGCGAGGACTGCCGCTA
CGAGCAGATGCACTTTGACGCCGCCATGGCCAGGCAGCAGGCCAGCGCCAGGCGGAAGCAGCAGCAGCAGCAGGCCCAGG
CGCAGCCCAGCGTGCC---------------GGCGCCGGCGCCCGTGTCCGCCAAGGCCGACGTGTCCGTGGCGAGCTAG
TTGCGCCGCGCCGCATCGGGT----TAGCTGGTAGGAACTATGTACCCTTTTTGCCTTGGGTTGAAGGAGGAGGAGGATG
CGGGATTC-TTGGACGGCCAGTGTTTTTGCCCTGGCATCCGATGCCGATCGGTCCATCTTTTGATCTGCACAGGGCGGGC
AATCTGAGCAGGATCACCGCGGTCTTCTGATTGGCCTCATTTTGGGGT------TTGGGTTTGGGTATGAGAGGAGAGAG
CAGGTGTGCAAGAGCACCGTCGCTGTGTAATTATGCAAGGCAATCGATGTAAAGTATTTCTCCAAATTTTGAAGGAAATC
CGATCATGTTTATTATTCATTTGAGCGAGTATTTTG-TTTTGAACCAGCAGATGTTTATT----GGATGGTACAATTGAT
AATTCCTAGCCAGCAAAAATTTCTCATAACGACGAAAG----ATTGGCCGTCCGATTAGATTCAGAGGCACAATTG-TTT
TCACTTGCCAGTATTACAGCTCGTGCACGTAAGAACATCTAACGTCATAATCTGCCACAAAACAGCTAATGTATCTATTC
TTCTCTTCATTA-TTTTTTTGCCGGGAGCTAGCGCATCCAATTTGATGCATTTTCCGGTAACCGAAAGCAGTTCGCCATG
ATTATGTTCTG-TTAAGCAAAATGCTATTTGCTGTCTAATCTCTGATGAAGAATACTGAACCAGCTGGTCGGCCCCAGCA
AATCATGTACTGAACCAGGTCTGTTAATCAG-TTAAATACGAATACGAGGAAAACGAATCTCCAACGAACAAGCAAAACC
CGATTTTCATTCAGCGAATCGAGTAAACAAAAGGCCAAGGTAGAGGAAATCAAATCAATCATGTACCATA----------
---------------AATTAAGTAAACAAAGGGCCAAGGTAACAGGAAATCAAATCAAACATGATACACACTTCAG-GCC
GAAGGTGGAGGAAATCAAATCAACCATGATACCCCAACCGGCCAATCCTCCGGCGTCACATTCGTCGAACGCCTCAATTA
TTTTACTGTT----------------------------------------------------------------------
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>chr2A_1
TCCGGGCCGACGTGGCAAGTCAGTTCTGCCCTAATGGCCCCTTGATCAGGGTGTCATGATGCCTAGCATGACGTCCTGGG
GCCGGCCGTCATAAAAATGAGCCATTTTTTGATATCTATTACTAGTTTAAATGGGGTCCATTTTGTGTTTAATTTTGAAG
ATGGGCCAAATTTGCTGTTTTTCACTAGGAGACATGCCTCGTCTTCGTCTTCAAAAGCAATAAAAACCACCGTGCTTCTC
CAAAAAAGAAAAAGAAAAACACCGTGCAAGATTCTCGCGGAGAGCCCCCAGTCCCCTACCAGCCGCGCGTGTCACGATGC
AGTTAGCCTGGAGTCAAGCCCACTGCACCCCTCATCTGATCCACTGGGAGCTTCCCCCGCACACTTTCCGCGTGAAAGAC
TCCAAACCTTGGAGTCCCTACCGTGAAAGCAAACGCCACGACCAGCTGTTGGCCACGTCAAGCTGAGTCGCCGGTATTAC
CATCGACGCGACCCCCGCCCGGATCTCGTCGTTTTCGCCCGCGTCCCACCGCCACCAGCTGCGCCATGGGCCATGGCCGC
AGAACAAAACATAAAGTAATGATTAAACCGCTCCGACACTCACTTACCGGTGGGCCGGCCGGCATGTGGGTTCCAGAACC
GCCCACAGCTTTCTTTCCCCCTCAGCTTTTCGCCCAAGCATCTCACATAAAAAAATGAAAATAAAACTTTCCGCCC----
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-------------------------AAGCAC--CACGTCACGGCCTCGAACCCTCTTGCCCTCCACCCTCCCCGCGGGTT
TATATGCCCGCCCCGTCCGCCTCCTCCGAACCTCAGCTCAAGCGGAACCCGCACACCCTCGCTCTCTCGAGTTCCTCTTC
TTCT------TCCCCCCGAGCAAGGAGGAGGCTGCATCCGCAC----------AGCCCTGCGTCATGGCCGCCTGCGCCT
TCTTCTTCGACGCGGAGCCGCTGGGCGAGCCCGGGCTGCAGCTGCACGGGCCGGAGCTGGAGCTGGACGCCTGCGCGCTC
TGCACCAAGCCGCTGCAGGGCAACAGCGACATCTTCATGTATAAGGGGGACACCCCCTTCTGCAGCGAGGACTGCCGCTA
CGAGCAGATGCACTTCGACGCCGCCATGGCCAGGCAGCAGGCCAGCGCCAGGCGGAAGCAGCAGCAGCAGCAGGCCCAGG
CGCAGCCCAGCGTGCC---------------GGCGCCGGCGCCCGTGTCCGCCAAGGCCGACGTCTCCGTGGCGAGCTAG
TCGAGCCGCGCCGCATCGGGCTGGCTAGCTAGTAGGAACTATGTACCCTTTTTGCCTTGGGTTGAAGGAGG---AGGACG
CGGGGTTCTTTGGACGGCCAGTGTTCTTG-CCTGGCATCCGGTGCCGATCGATCAATCTATTGATCTGCACA----GGAC
TATCAGTCCAGGATCACCGCGGGCTTTTGATTGGCCCCCTTTTGGGGT------TTGGGTTTGGCTATGAGAGGAGAGAG
CGGGTGTGCAAGAGCACCGTCGCTGTGTAATTATTCAAGGCAAGCGATGTAAAGTATTTCTCCAAATTTCGAAGGAAATA
TGATCATGTTTATTATTCATTTGAATGAGCATATTG-TTTCGAACCAACAGATGTTGATG----GTATGGTACATGGTAC
AACTGA---------AAATTTTATCA-AATGATGAACG----ATTTGCCGTCCA---AGAATCAGAGACACAATTG-TTT
TCACTTGCCAGGATTGCAGCTCG-----------------------------TGCCACAAAACAGCTAATGTATCTATTC
ATTGCTCTATTTTTTTTTTTGCGGGGAGCTAGCGCATCCAATATGATGCATTTCCCTGTAACCGAAAGCAGTTCGCCATG
ATTATGTTCTG-TTAAGCGAAATGCTATTTGCTATCTAAATCTC--TGAAAAATACTAAACTTGGCCGG----CCCAGCA
AATCATGTACTGAACCAGGTCCGCATATCAATTTAAATACGAATACGAGGAAAACGAATCTTCAACGAACAAGCGAAACC
CAATTTTCATTTGGCGAATCGAGTAAACAAAAGGCC-ATGCAGAGAAAATCAATTCGAGCAAGTGTGAGTAAACAAAATC
CCCTAAAAAAAGAAGAATTAAGTAAACAAAGAGCCAAGGCAAGAGGAAATCAAATCAAACATGATACACACTCCAGCGCC
GAAGGTGGAGGAAATCAAATCAACCATGATGCCCCAACGGGCCAATCCTCCGGCGTCACACTCGTGGAACGCCTCAATTA
TTTTACTGTTTTCCGTGCGCCTCGCGACTCAGCGCCGAGTCACTGAAAAGTACGGGAACATTTCCGCGCAGAAAAGAAAA
ACAGGAATCATCCGGGAGGGAGGGAGGGGTCGCGTCACGGCCGGGCTGGATGGTGTGGACGTGCAACCGCCCATGTGTCC
GATCCCTACGAGGTGGAGACGGTGACTCAGCGCGTCTCGCGGGCCCCGCACGGAAAAACCAAACGCTTTTTTATTCCCGC
CACCCCAGTCCGCGGAGAACATCTGTGCGGACGTCCAAATCCCTCCCGTGGAATATTTAAGTTTCTGTGGCGCTCTTTTC
ACGGCTTTATTATTCTGCGCCGAAAGTCGGAAAATGCATGTGTCACTGTAATCGCGGTACAAGTAGTCGCTTGTAGTTTT
TCACCGGCCGCCCGCTGCCAACCAAGTGTGCGTCGCTCCTCTCTCGAGATGGGCTGAAGTTGAATGATTACGTGCAATGC
CTCACTCTGAAGCCACACCATAAACAAAACGGGGCGCGGATCTCGATGGGGCTGTCTCCCGGAACGAAGCCTGCCCGCCA
GACCGGCGATTCCCCGCGCCCAAAAGAAAATTACGGGCGAAGATTTTATGCCTGGCGCGCTGTTAGCCTCTCGCATACTA
TAACTTAAACAACACAGATCTCACGAGCTGCGCCCTGCTCTATGAAGATTTTGTACGAGTACAAAACTGCCCGTGGCCTG
GTGCCGGTGCATGACAGGTTCGTGCGTTTGATTGGGTGTAGAGGTGTAGACAAGATCTGCACATGTGCGCCAACCCCTAC
ACTGTTCATCAGCTGCTGCCTGGCGGGCATGCACCACGGCCCCCGAAGCTCGCCCATGGACCACGGCACCACGCCATGGA
GAAAAGAACGGCACATCGATTTTATTTTCTTTTATTTTCTCAAAAGATCGCATATTGTAACGGGTGCGCACTGTTGGTCT
ATAATTAGCGTGCCTAACCACGTGGGCCACCTGGCCCGTATGTTGGCGAAAAGGCTGGCGCGCTAATTATGGGCCCTAAT
ACGGTCCGCATTAGTTTACGTCAGTGGCCGCCTGATGATGTAGATTTGATGCCCACGATTCCGACTAGACGGACAAGAAA
TAATTCGTTCGCGCTTATGTTATTGGTGCGAATATTTACTCAGATCTTTTGCCAGAGAAAAGTAGAGCAATCATTTGTTT
GTTCAGGGCAACTACTACTTCAGTATTTGTATTTCCAATCCAATCAGTGATCAGTGGATGGTATTGGTGTCGTACTCCAA
GACTATGGGCGCTGGCACACAGGTTTGGGGTACATGGAGGGCGACGTCGCTGGACCGACCTCTGTACGTTGCTATCGCTG
GCCGCGACCCTGTCCACGTCGCCCGGACATAACATGGTTCCCGTCGTTTTCGCCGCCGTGGAGCCACGTCTGCCATCCGG
CGGGGCGGCGGGCCACCCACCGTATGGCGCCGTGGGTCCGTGTCGGAGCCCGGGAATAAAGAAACCGAGCCGCTCCATCG
TCCATGGTATTTGCCTGACCCTTTGGGCTCGTCGTCTCTCCCGCACCAGACCTCTTCTCTCCTGGCATTCGCAAGTCGCA
ACCATTGAACCATATAATACCCAGACACCTAGTTTGGTTCAGCACAGCAAACACTCGACCTCCCACTCCCGGCGCGTAGC
ACCGCACGCACTGCGAAGTTATTAGCTACACACACGGACACACGATGGCCTGCGCCTTCTTCTTCGACGCCGAGCCGGTC
GGCGAGCCCGGCGTGCACGCCCTGGACGCGTGCGCGCTCTGCACCAAGCCGCTAGCAAGGGACAGCGACATCTTCATGTA
CAAGGGGGACACGCCCTTCTGCAGCGACGACTGCCGACACGAGCAGATGCAGCTCGACGCCGCCTGCGCCAGGCAGGCGG
CCAG
>chr2D_283
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------------------------------------------------------CCTACCAGCCGCGCGTGTCACGATGC
AGTTAGCCTCGAGTCAAGTCCACTGCATCACTCATCTCATCCACTGGGAGCTTCCCCCGCACACTTTCCCCGTGAAAGAC
TCCAAACCTTGGAGTCCCTACCGTGAAAGCAAACGCCACGACCAGCTGTTGGCCACGTCAAGCTGAGTCGCCGG---TAC
CATCGACGCGACCCCCGCCCGGATCTCGTCGCTTCCCCCCGTGCCCCACCGCCACCAGCTGCACCATGGGCCATACCGGC
AGAAC-AAACATAAAGTAATGATTAAACCGCTCCGACACTCACTTACCGGTGGGCCGGCCGGCGTGTGGGTTCCAGAACC
GCCCACAGCCTTCTTCCCCCCTCAGCTTTTCGCCCAAGCATCTCTCACAAAAAAATGAATAAAAAACTTTCCGCCC----
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-------------------------AGGCACCACACGTCACGGCCTCGAACCCTCTTGTCCTCCACCCTCCCCGCGGGTT
TATATGCCCGCCCCGTCCACCTCCTCTCAACCTCAGCTCAAGCGGAACCCGCACACCCTCGCTCTCTCGTTCT-CTCTTC
TTCT------TCT-CCCGAGCAAGAAGGAGGCTCTGCTCCGCGCAAGCAAGCGAGCTCTGCCTCATG---GCCTGCGCCT
TCTTCTTCGACGCGGAGCCGCTGGGCGAGCCGGGGCTGCGCCTGCACGGGCCGGAGCTGGAGCTGGACGCCTGCGCGCTC
TGCACCAAGCCGCTGCAGGGCAACAGCGACATCTTCATGTACAAGGGGGACACCCCCTTCTGCAGCGAGGACTGCCGCTA
CGAGCAGATGCACTTCGACGCCGCCATGGCCAGGCAGCAGGCCAGCGCCCGGCGGAAGCAGCAGCAGCAGCAGGCCCAGG
CGCAGCTCAGCGTGCCGGGAGCACCGGCGCCGGCACCGGCACCGGTGTCCAACAAGGCCGATGTGTCCGTGGCGAGTTAG
TTGCGCCGCACCACACCGGGT----TAGCTAGTAGGAACTATGTACCCTTTTTGCCTTGGGTTGAAGA---AGGAGGATG
CGGGGTTC-TTGGACGGCCAGTGTTCTTGCCCTGGCATCCGGTGCCGATCGATCAATCTATTGATCTGCAAACACTGGGC
AATCGGAGCAGGATCACCGCGGGCTTTTGATTGGCCCCCTTTTGGGGTTTGGGTTTGGGTTTGGGTATGAGAGGAGAGAG
CGGGTGTGCAAGAACACCGTCGCTGTGTAATTACGCAAGGCAATCGATGTAAAGTATTTCTCCAAATTTTGAAGGAAATA
TGATCATGTTTATTATTCATTTTGAACAGAGTATATTTTTTGAACCGGCAGATGTTGATCGCTCGGATGGTACAATTGAC
AATTCTTAGCCAGCTAAATTTTCTGA-AATGATGAAACAAATATTTGACGCCTA---AGAATCAGAGGCACAATTGTTTT
TCACTTGCTAGTATTACAGCTCG-----------------------------TGCGACAAAACGGCTAATGTATCTATTC
ATTTCTCTATTTA--TTTTTGCCGGGAGCTAGCGCATCCAATATGATGCATTTTCCTGTAACCGAAAGCAGTTCGCCATG
ATTATGTTCTCTTTAAGCGAAATGCTATTTGCTATCAAAATCTC--TGAAAATTACTAAACCTGGTCGG----TCCAGCA
AATCATGTACTGAACCAGGTCTGTTAATCAG-TTAAATACGAATACGAGGAAAACGAATCTCCAACGAACAAGCAAAACC
CGATTTTCATTTGGCGAATCGACTAAACAAA-------------------------------------------------
------------------------------GGGCCAAGGCAACCGGAAATCAAATCAAACATGATAC-------------
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>SNPs
----S---S--------------S---SS---S------------------S-------------S-------S-S----
------------S------S-S-------SS-SS-SSS-S-SS---------S----S---------S-----------S
------S-------S----------------------------SS---------------------S-------------
SSS----------S----SS------------S--S--S--S------S-------------------------------
-------------------------------------------------S-------S----------------------
---------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSS-------------------------------------------------------
--------------------------------------------------------------------S-----------
----SSSSSS----------------------------------------------------------------------
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------------------S-------------------------------------------------------------
---------------S----------------------------------------------------------------
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------------------------------S-------------------------------------------------
----S--------------------S---------------S---------S--S----S------------SSSS----
----S-----------------S---S---------S-S-----------------------------------------
-S-----------------------------------------------------------------------------S
S-----------------------SS---S--S-----------------------S--S-------------------S
-----S--------S---S-------S--S--S------------S-------SSSS---S-------------------
-----------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------------------
S-S---SS---S------------------------------S-------------S-----------------------
------------------S--------------S-----SSSSSSS----S------S----S-S-S-SSSSS-------
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-----------SS-----------------------S-S-S----S-------S--S-S--S--SSS-SS----------
---------------------------------------S--------------------------------S-------
------------------------------S-------S---------------------S----S--------------
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>forward_204
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------------------------CTAGGAGACATGCCTCGTCG------------------------------------
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>reverse_1445
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----ATTCTTGGACGGCCAGTGTT--------------------------------------------------------
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