>input_sequence_83986
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--------------------------------------------------ATGCAAGGAATGGCAATGGCCATTCAGCAC
TCGGATAAACCAGTGATTGTCCAATCGGATTCCTCATGTGCTCTAGCCACTATTTTGGATGACACTTTATCTAGGTCGGT
CTATGGTCATTTAGATGCCGAGATTAAGGCACTTCTAGTTGATAGGGAGTCTGTTCCTCTGAAAATTAGTAAAGATCAAA
ACAGAGTAGCTCATCTTTTGGCACATTATAATCGTACCGAGTGTTATACTGCGGTATGGTTGAGTTCGAGTCCTCCGTGT
TGTGAGGAGCAGCTGGCTCAAGATTGTAACCCTGCTTTTATGGAATAA--------------------------------
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>chr2B_1_TraesCS2B01G327400
TTTGATTTTCGACCTATAACTCCCAAAAGGAACTGTCGGTTTAAT---AGGATCTCTGATTTTCTGGACATGAACGGAGC
TTGGTTGGTCGACCGGCTCGAGAAGCATTTTTGGCCAATGGACGTAGTAGAAATACTGAAAATTCGTACATCTCCAAGAA
ATAGGCAGGATTTTATCGGTTGGTTTCCAGAGCCGCGTGGAGTTTTTACAGTCAAATCCGCCCATAAACTTGCTACCGAA
TCACATGATGTGGTTCATGCAGGGGGCGCTAGTAGCACAAGGCCGGAGGGTGATCGACCAATCTGGAGTGTGATTTGGAA
AGCGCGGGCACCCTTGAAGATGCGCATCATGGCATGGAGAACGGCGACTGGGACTCTGGCTACTAATTTGGGCAAAGCAC
ATCATCATATTCCCACATGTAGTACGTGCGCGAGTTGTGGTAGAGAGAAGGAGAGCAGTTTCCACGCTCTTATCACATGC
AATAATG----GAAGGTGTGGGAAGGCCTAAGGAAAATTTGGCCGCTCCCTAATAA-TCTGTACTAGTCGATTCAGGCAA
AGACTGGTTGTTACATCTACTATCAAAGTGCCCTGATAGTACGAGGGATATGGTGATTTTGACCATTTGGCGCATCTGGC
AACTGCGGAACGATCTTACACATGGAAAAGATGTACCCCCAGTTGAGGTGACTGTGGATTATTTGCAGAGTTATTACAGG
TCCCTCAACTTGGTTCGGAATTATGGCATGGAAGAGATAATCAAAGGGAAGATAGAACAGTATGAGTTTCAACCAATTGT
ACTGAACAAAGTATCAAAAACGCCTAAACAGTGGCCCCGTCCTCTGGCAGGATGGGTTGCTCTCTTTGTTGATGGCTCAT
ATTCTAGGGATGATGGACG--TGCCGCGGCTGGCATGGTGTTGCGTAATGAGGATGGATCAGTGATTTTTGCTGCTTACA
GGTACATCTTCAATTGCAATGATGCACTGGAATCAGAGATTCATGCCCTCATGCAAGGAATGGCAATGGCCATTCAGCAC
TCGGATAAACCAGTGATTGTCCAATCGGATTCCTCATGTGCTCTAGCCACTATTTTGGATGACACTTTATCTAGGTCGGT
CTATGGTCATTTAGATGCCGAGATTAAGGCACTTCTAGTTGATAGGGAGTCTGTTCCTCTGAAAATTAGTAAAGATCAAA
ACAGAGTAGCTCATCTTTTGGCACATTATAATCGTACCGAGTGTTATACTGCGGTATGGTTGAGTTCGAGTCCTCCGTGT
TGTGAGGAGCAGCTGGCTCAAGATTGTAACCCTGCTTTTATGGAATAAAACTCTCTTTCACCCCGCAAAAAGAAAAGAGA
TCAATCCAGGTGCCTGTGTGCTAGCTTGCACGTGCATACAGCTCATGTGGTGATTTGATCTAGTGGTCTAAAAAACAACA
AGCAGGAGACGAACAGACTGCCTCCATCAGCCGCTCCCTCGGCAGCGGTCGCTCCAGGTTCTCCTCCCCCTGCGGATCTT
GCCACGGAACAACCGCCAGAGCTATTTAGATCAGAAGCCTGCTCGCAACAAAACGAATCTGCAAGCTGGGGGTGACGAGG
GCCGGCCGCGTTACCGGGTGGAGATGAGGGAGCCGAAGAAGCCAGTGAGGAAGAAGAGGAACCACGAGAGGAGCAGCCGG
CTCCTCGGCGCACGTGGCCGGCGCGTCGAGCCGCTCCAGCACGGCCCTGGCGGCGCCATACACCACTCCCCGCCACCGCC
ACCATCGTGCTCCTCGTCCTCCCTCCGCTGCTGCTCGACGCTCGTCGGCGTCGCCCAAGGCCTGCTGCTGCTGCTCCCCG
CCACCGTCCGCCGTCGTGCTCCTCGTCCTCCCTCCGCTGCTGCTCGTCGCTGTTGCGGCGGATCTGGCCGCCGACGGCGC
GGTTCGAGGCGGTGGGTGGTGGGGCGGGTGTGTGACGGGAGAGGAGGGACGGGGGTGACGCCAGGAGAGGGCGAGGGAAC
GGGCGGCGGCAGCGGCGTAGAAAGGCGTCAAGCGGAGGAGGAGGGCGCGGTGGCGTCAAGCGGCTGCCGGGCGCGGCGGC
TAGGGTTTCGTGGGAGGGGAGGGAAATAAAGGAGAGTGGGCGGGAGGGGGAGGGAACGACCCGATGCTCGCTCTCCATGG
TCTCTCCCGGATCGCTATTAGGGACTCTTTCAACCGCGTGAAGTGACGAAAATGTCCTCGGTGGGCTCTGGGAATTACAG
GCGGTGACATCCCAGTTCTAATACTATTCATTGCAATAGTGTTTCAATCTAATCCAACGGATGAGGTGATTTCTGAGGAA
GATCCAAC
>chr3D_1
TTTGATTTTCGACCTATTACTCCCAAAAGGAACTGTCGGTTTAAT---AGGGTCTCTGATTTTCTGGACATGAACGGAGC
TTGGTTGGTCGACCGGCTCGAGGAGCATTTTTGGCCAATGGACGTAGTAGAAATACTGAAAATTCGTACGTCTCTAAGAA
ATAGGCAGGATTTTATCGGTTGGTTCCCAGAGCCGCGTGGAGTTTTTACAGTCAAATCCGCCTATAAACTTGCTACCGAA
TCACATGATGTGGTTCATGCAGTGGGCGCTAGTAGCACAAGGCCGGAGGGTGATCGACCAATCTGGAGTGTGATTTGGAA
AGCGTGGGTACCCCTGAAGATGCGCATCATGGCATGGAGAACGGCGACTGGGACTCTGGCTACTAATTTGGGCGAAGCAC
ATCATCATATTCCCACATGCAGTACGTGCCCGAGTTGTGGTAGAGAGAGGGAGGGTAGTTTCCATGCTCTTATCACATGC
AATAATGCTAGGAAGGTGTGGGAAGGCCGAAGGAAAATCTGGCCGCTCCCTAATGATTATGTACTAGTTGATTCAGGCAA
AGATTGGTTGTTACATCTACTATCAAAGTGCCCTGATAGTACGAGAGATATGGTGATTTTGACCATTTGACGCATCTGGC
AACTGCGGAACGATCTTGCACATGGAAAAGATGTACCCCCAGTTGAGGTGACTGTGGATTATTTGCAGAGTTATTACATG
TCCCTCAACTTGGTTCAGAATTATGGCATGGAAGAGATAATCAAAGGAAAGATGGAACAGTATGAGCTTCAACCAATTGT
ACTGAACAAAGTATCAAAAACACCTAAACAGTGGCCCTGTCCTCAGGCTGGATGGGTTGCTCTCTTTATTGATGGCTCAT
TTTCTAGGGATGATGGACG--TGCCGCGACTGGCATGGTGTTGTGTAATGAGGATGGATCAGTGATTTTTGCTGCTTATA
GGTACATCTTCAATTGCAATGATGCACTGGAATCAGAGATTCATGTCCTCATGCAAGGAATGGCACTGGCCATTCAGCAC
TCGGATAAACCAGTGATTGTCCAGTCGGATTCCTCATGTGCTCTAGCCACTATTTTGGGTGACACTTTATCTAGGTCGGT
CTATGGTCATTTAGATGCCGAGATTAAGGCACTTCT--------------------------------------------
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>chr3B_1
TTTGATTTTCGACCTATAACTCCCAAAAGGAACTGTCGGTTTAATAGCAGGGTCTCTGATTTTCTGGACATGAACGGAGC
TTGGTTGGTCGACCGGCTCGAGGAGCATTTTTGGCCAATGGACGTAGTAGAAATACTGAAAATTCGTACATCTCCAAGAA
ATAGGCAGGATTTTATCGGTTGGTTTCCAGAGCCGCGTGGAGTTTTTACAGTCAAATCCGCCTATAAACTTGCTACCGAA
TCACATGATGTGGTTCATGCAGGGGGCGCTAGCAGCACAAGGCCGGCGGGTGATCGACCAATCTGGAGTGTGATTTGGAA
AGCGCGGGTACCCTTGAAGATGCGCATCATGGCATGGAGAACGGCGACTGGGACTCTGGCTACTAATTTGGGCAAAGCAC
ATCATCATATTCCCACATGTAGTACGTGCCCGAGTTGTGGTAGAGAGAGGGAGAGCAGTTTCCACGCTCTTATCACATGC
AATAATGCTAGGAAGGTGTGGGAAGGCCTAAGGAAAATTTGGCCGCTCCCTAATGATTCTGTACTAGTCGATTCAGGC--
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>chr4A_1
TTTGATTTTCGACCTATAACTCCCAAAAGGAACTGTCGGTTTAAT---AGGGTCTCTGATTTTCTGGACATGAACGGAGC
TTGGTTGGTCGACCGGCTCGAGGAGCATTTTTGGCCAATGGACGTAGTAGAAATACTGAAAATTTGTACATCTCCAAGAA
ATAGGCAGGATTTTATCGGTTGGTTTCCAGAGCCGCGTGGAGTTTTTACAATCAAATCCGCCTATAAACTTGCTACCGAA
TCACATGATGTGGTTCATGCAGGGGGCGCTAGTAGCACAAGGCCGGAGGGTGATCGACCAATCTGGAGTGTGATTAGGAA
AGCGCGGGTACCACTGAAAAT-----------------------------------------------------------
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----------------------------------------------------------------ATTTTTGCTGCTTACA
GGTACATCTTCAATTGCAATGATGCACTGGAATAAGAGATTCATGCCCTCATGCAAGGAATGGCACTGGCCATTAAGCAC
TCGGATAAACCAGTGATTGTCCAATCGGATTCCTCATGTGCTCTAGCCACTATTTTGGGTGACACTTTATCTAGGTCGGT
CTATGGTCATTTAGATGCCGAGATTAAGGCACTTCTGTTTGATAGGGAGTTTGTTCCTCTGAAAATTAGTAGAGATAAAA
ACAGGGTAGCTCATCTTTTGGCACATTATAGCCGTACCGAGTGTTGTACTGCGGTATGGTTGAGTTCGAGTCCTCCGTGT
TGTGAGGAGCAGCTGGCTCAAGATTGTAACCCTGCTTTTATGGAATAAAACTCTCTTTCACCCCGCAAAAAAAA------
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>chr5B_530
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---------------------------------------------------------TCTGTACTAGTCGATTCAGGCAA
AGACTGGTTGTTACATCTACTATCAAAGTGCCCCGATAGTACGAGGGATATGGTGATTTTGACCATTTGGCGCATCTGGC
AACTGCGGAACGATCTTACACATGGAAAAGATGTACCCCCAGTTGAGGTGACTGTGGACTGTTTGCAGAGTTACTACAGG
TCCCTCAACTTGGTTCGGAATTATGGCATGGAAGAGATAATCAAAGGGAGGATGGAACAGTATGGGTTTCAACCAATTGT
ACTGAACAAAGTATCAAAAACAACTAAAGAGTGGCCTCGTCCTCTGGCAGGATGGGTTGCTCTCTCTGTTGATGGCTCAT
ATTCTAGGGATGATGGACG--TGCCACGGCTGACATGGTGTTGCGTAATGAGGATGGAACAGTGATTTTTGCTGCTTACA
GGTACATCTTCAATTGCAATGATGCACTGGAATCAGAGATGCATGCCCTCATGCAAGGAATGGCACTGGCCATTCAGCAC
TCGGATAAACCAGTGATTGTCCAATCGGATTCCTCATGTGCTCTAGCCACTATTTTGGGTGACACTTTATCTAGGTCGGT
CTGTGGTCATTTAGATGCCGAGATTAAGGCACTTCTGGTTGATAGGGAGTTTGTTCTTCTGAATATTAGTAGAGATCAAA
ACAGGGTAGCTCATCTTTTGGCACATTATAGCCGTACCGAGTGTTGTACTGCGGTATGGTTGAGTTCGAGTCCTCCGTGT
TGTGAGGAGCAGCTGGCTCAAGATTGTAACCCTGCTTTTATGAAATAAAACTCTCTTTCACCCCGCAAAAAGAAAGAG--
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>chr2A_651
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------------------CACATGGAAAAGATGTACCCC-AGTTGAGGTGACAGTAGATTATTTGCAGAGTTATTACAAG
TCCCTCAACTTGGTTTGGAATTATGGCATGGAGGAGATAATCAAAGGGAAGATGGAACAGTATAAGCTTCAACCAATTGT
ATTAAACAAAGTATCAAAAACACCTAAACAGTGG-CCCGTCCTCCGGCAAGATGGGTTGCTCTCTCTGTTGATGGATCAT
TTTCTAGGGAAGATGGACG--TGCTGCGGTTGGCATGGTCTTACGTAATGAGGATGGATCAGTATTTTTTGCTGCTTACA
GGTACATCTTCAATTGCAATGATACACTGAAATCAGAGATTCATGCCCTCATGTAAAGAATGACACTAGCCATTCAGCAC
TCGGATAAACCATTGATTGTCCAATCGGATTCCTCATGTGCTTTAGCCACTATTTTGGGTGACACTTTATCTAGGTCGGT
TTATGGTCATTTAGATGCCGAGATTAAGGCACTTCTGGTTGATAGAGAGTTTGTTTCTCTAAAAATTAGTAGAGATCAAA
ATAGGGTAGTACATTTTTTGGCACATTATAGCCGTACCGAGTGTTGTCCTGCGGTATGGTTGAGTTCGAGTCCTCCATGC
TATGAGGAGCAGTTGGCTCAAGATTGTAACCCTGTTTTTATGGAATAAAATTCTCTTCCACCCTGAAAAAGAGAGAGAGA
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>chr6D_688
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-------------------------------------------------------GGATTATTTGCAGAGTTATTACAGG
TCCCTCAACTTGGTTCGGAATTATGGCATGGAAGAGATAATCAAAGGGAAGATGGAACAGTATGAGTTTCAACCAATTGT
ACTGAACAAAGTATCAAAAACACCTAAACAGTGGCCCCGTCCTCTGGCAGGATGGGTTGCTCTCTCTGTTGATGGCTCAT
ATTCTAGGGATGATGGACG--TGCCGCGGCTGGCATGGTGTTGCGTAATGAGGATGGATCAGTGATTTTTGCTGCTTACA
GGTACATCTTCAATTGCAATGATGCACTCGAATCAGAGATTCATGCCCTCATGCAAGGAATGGCACTGGCCATTCAGCAC
TCGGATAAACCAGTGATTGTCCAATCGGATTCCTCATGTGCTCTAGCCACTATTTTGGGTGACACTTTATCTAGGTCAGT
CTATGGCCATTTAGATGCCGAGATTAAGGCACTTCTGGTTGATACGGAGTTTGTTCCTCTGAAAATTAGTAGAGATCAAA
ACGGGGTAGCACATCTTTTGGCACATTATAGCCGTACC------------------------------------------
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>chrUn_711
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------------------------------------------------------------------------------GG
TCCCTCAACTTGGTTCGGAATTATGGCATGGAGGAGATAATCAAAGGGAAGATGGAACAGTATGAAGTTCAACCAATTGT
ACTGAACAAAGTATCAAAAACACCTAAACAGTGGCCCCGTCCTCCGGCAGGATGGGTTGCTCTCTCTGTTGATGGTTCAT
ATTCTAGGGATGATGGACG--TGCCGCGGCTGGCATGGTGTTGCATAATGAGGATGGATCAGTGATTTTTGCTGCTTACA
GGTACATCTTCAATTGCAATGATGCACTGGAATCAGAGATTCATGCCCTCATGCAAGGAATGGCTCTGGCTATTCAGCAC
TCGGATAAACCAGTGATTGTCCAATCGGATTCCTCATGTGCTCTAGCCACTATTTTGGGTGACACTTTATCTAGGTCGGT
CTATGGTCATTTAGATGCCGAGATTAAGGCACTTCTGGTTGATAGGGAGTTTGTTCCTCTGAAAATTAGTAGAGATCAAA
ACAGGGTAGCACATCTTTTAGCACATTATAGCCGTACCGAGTGTTATACTGCGGTATGGTTGAGTTCGAGTCCTCCGTGT
TGTGAGGAGCAGCTGGCTCAAGATTGTAACCCTGCTTTTATGGAATAAAACTCCCTTTCACCCCGCAAAAAAAAAG----
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>chr7A_711
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------------------------------------------------------------------------------GG
TCCCTCAACTTGGTTCGGAATTATGGCATGGAGGAGATAATCAAAGGGAAGATGGAACAGTATGAAGTTCAACCAATTGT
ACTGAACAAAGTATCAAAAACACCTAAACAGTGGCCCCGTCCTCCGGCAGGATGGGTTGCTCTCTCTGTTGATGGTTCAT
ATTCTAGGGATGATGGACG--TGCCGCGGCTGGCATGGTGTTGCATAATGAGGATGGATCAGTGATTTTTGCTGCTTACA
GGTACATCTTCAATTGCAATGATGCACTGGAATCAGAGATTCATGCCCTCATGCAAGGAATGGCTCTGGCTATTCAGCAC
TCGGATAAACCAGTGATTGTCCAATCGGATTCCTCATGTGCTCTAGCCACTATTTTGGGTGACACTTTATCTAGGTCGGT
CTATGGTCATTTAGATGCCGAGATTAAGGCACTTCTGGTTGATAGGGAGTTTGTTCCTCTGAAAATTAGTAGAGATCAAA
ACAGGGTAGCACATCTTTTAGCACATTATAGCCGTACCGAGTGTTATACTGCGGTATGGTTGAGTTCGAGTCCTCCGTGT
TGTGAGGAGCAGCTGGCTCAAGATTGTAACCCTGCTTTTATGGAATAAAACTCCCTTTCACCCCGCAAAAAAAAAG----
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>chr1D_820
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---------------------------ACAGTGGCCCTTTCCGTGGGCAGGATGGGTTGCTCTATCTGTTGATGGATCAT
TTTCTAGGGATGATGGACGCGTGCCTCGGCTGCCATGGTGTTGCGTAATGAGGATGGATCATTGGTTTTTGCTGCTTACA
AGTACATCTTCAATTGCAATGATGCACTGGAATCGGATATTCATGCCCTCATGAAAGGAATGGCACTGGCCATTCAGCAC
TCGGACAAACCAATGGTTATCCAACCGGACTCCTCATGTGCTCTAGCCACTATTCTGGACGACACTTTATCTAGGTTGGC
CTATGATCACTTAGATGCAGAGATTAAGGCACTTCTGGTTGATAGGGAGTTTGTTCCTCTGAAAATTAGCAGAGATCAAA
ACAGGGTAGCACATCTTTTGGCACATTATAGCCGTACCGAGTGTTGTACTGTGGTATGGTTGAATTCGAGTCCTCCGTGT
TGTGAGGAGTAGCTGGCTCAAGACTGTAACCTTGCTTTTATGGAATAAAACTCCCTTTCACCCTGCAAAAAAAAA-----
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>SNPs
---------------------------------------------------S----------------------------
----------------------S---------------------------------------------------------
--------------------------------------------------------------S-----------------
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--------S-----------------------------------------------------------------------
-----------------------------S------------------S-------------------------------
------------------------------------------------------S-------------------------
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-----------------------------------------------------S--------------------------
---------------------S----------------------------------------------------------
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-----------------------------------------------------------------S--------------
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------------------------------------S-------------S--------------------S--------
----S-------------------------SS------------------------------------------------
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSS
>forward_430
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----------TCCCACATGTAGTACGTGCG--------------------------------------------------
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>reverse_1388
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---------------------------GCACGTGCATACAGCTCATG---------------------------------
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