>input_sequence_83973
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------ATGGAGGGAGGGGACTTCCACAAGAGCGGCTCGCCAGAGGATACCGGCGGGTCAAGGCGGGCGCCGGCATACTA
CGAGTGCAGTTTCTGCAAGAGGGGGTTCACCAACGCGCAGGCGCTCGGCGGGCACATGAACATCCACCGCAAGGACCGCG
GTGGCAGCGGAGGCAAGTCTCGTGGGGCTGCGCCGCCGGCTGCCGGCCAGCAAGACGG---TGCCGGTGGGAATCAGGCT
CACTTGGGGCTTACCTTGGGAAGGGATGGGGACAGCAGGGAGGACGTGGACTTGGAGCTCCGGCTTGGCCACTACCCTTA
CAACTAG-------------------------------------------------------------------------
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>chr2A_1_TraesCS2A01G151000
TGGGGAGGTGGGGGACGGTGGACTGAGAAGAGATGGTGGTGGGAGCCGGGGAGAAGCTCGGATGAGGAAAACGATGGTGG
TGAATTTGATGGGTGGGCGACAGGATAAGGATGCCTGGTAGCAACTGGATAAGGAAAGAGAGGGACACGTTCGTGGCTCC
GTGCGAAGA---AAGGAAAGAGTGGGTCCACAGCTAGCACGAGGCAACAAGAGTGGAAGGAAGCCGGCCCAATTTCTAGC
CGGTCGCCCGGCGTTAAACATTTCCCTTTACAATTAGATAGGAAGTCCCAGGTTCGAATCGCAGCACTGGAGGTCTCTTT
TCTCTTTTTTGGAAAAACAGAAG-AAAAACAAGTTAGATGGGCCGGCCCAGCAAGGATAGGGGGTGTGCGCCCGTTTGCA
GATAGTACTGTAACGAGCGCAGAGGGCGCCGAATAGGATTTAGCCATCTACATATACTCTTGCCTCAAAAAA--ATATAC
TCTTGCCTAAA-AAAACACGGCGGCGGCGGCTGAACTTGTATCTTTTCCCCT----------------------------
--------------------------------------------TTCTGTACACCTTCCTCCTCAAGACTCCCTCCAATC
GCTACTGAGAAGAATTCCTCTGTAAGCTTGTGAGACA-------------------------------------------
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GTGAGTTGGTCCCTAACACTGTCACGGCAACACGCACTGACGTACGC--ACCCATCTGTAT--AACTAACTTGGCATTCT
CGCCGATCCCTACGCCACGCCAAACAAGAGCGTTGTGCTGTATTCGCCAACGAGGGCGGCAAGGGGAGCGCCGGCCGGCC
GGCCGGCCGAGTAGTTTACTCGATCGTGGTTCCGTCCAAACGCCAAAACTAGACGACAAATCAAGCCATGTCCATCAGCC
CCCGGCCTCCCCGACGCTACCAACTGGAGTAGCAGCCGTTTCTATCTGTCACTATATAGCACACCTGCCCTTGTTGCCTC
AACACATTTCTCCTAACTTGGTAGTTACTACCCAAAACCCTAGAAGCTCCGAACAAACACCGACTCGTAACTTTTGAAAG
CAGAATATGGAGGGAGGGGACTTCCACAAGAGCGGCTCGCCAGAGGATACCGGCGGGTCAAGGCGGGCGCCGGCATACTA
CGAGTGCAGTTTCTGCAAGAGGGGGTTCACCAACGCGCAGGCGCTCGGCGGGCACATGAACATCCACCGCAAGGACCGCG
GTGGCAGCGGAGGCAAGTCTCGTGGGGCTGCGCCGCCGGCTGCCGGCCAGCAAGACGG---TGCCGGTGGGAATCAGGCT
CACTTGGGGCTTACCTTGGGAAGGGATGGGGACAGCAGGGAGGACGTGGACTTGGAGCTCCGGCTTGGCCACTACCCTTA
CAACTAGCAA------------GCCGGCCGGCCGGCCATATAGATCATTAATGTTTGTTAACTGCTTGGAGGATTAATTA
GCTATATGGTACTCGCCAGTA---CTGATTTGGTAGGTCATTTCGTACTTTCTTTGCTGTTTTATTTGATTTCGAATTTG
GTTAATTTGTTGTAGTTTGCCACTAGGTATACGAATGAAAGTAATGGATCAGAGTATATGACCAATAATCGAGGACGCTG
ATGTGTGATTTTTCGTGTAAATATGCACCTCGAATGGGGCCATCGATGAGTGATGTTGTATATATAGACTTACTTATTTT
TTGTGAATCACATAAGAAGTAGGAGGTGGACGAATGGCTCTCGCAGGTGCAGCACCCTGATACCTCCGAGGAAAACCCTA
GATCAATTCATCGCATGATGGCGGCATTAATGCGTCGTTACCCCCTTGGGGGCGGCATTCTTGGAGATGCACTCGGATTC
GAGGGACCAGCGGATGGCTTCTTCGATGAAGCGGTGTCTCTTTCTACATATTCATGGTGACGGCTCTTGGCGGCATGGAG
CAGCGGAGGCTTGACGTCAGATGTGTGGTGATGGACACGTGCAAGTGGTCGACACTGTCTGGCGTCGTGGTGGCGTCGGC
GGCAGCTAGATCGGGCAAGGTTGATGCAGCAGTATAGCTCTGAAGATGGATTGCTAGCAAGTGGCTGTGGTGGCCTTATA
CCCGGTGTTAGAATAAATCCAAGGCATACTGTTGATCATCCGAGGACCAAGCAATCACACGAGCACAACACCGAGATTTG
TTAACGAGGTTCACCGATATGACTACATCCCCGGGGCCTGACTATGTGTGCTCCTCCCCATGACACCGCTACAATACCGC
ACCAGGTCGCCCTGGACGCCGGCACATGCCGCCAGCTTCCCCTGCGTTCCTGTGCTATTATGTTGGCATAGGTTACATCG
TGTGTCTACCCCCGCTATATATGAGAGGCCTAAGATACAAGTGTCCTACTAGGACATGACTC
>chr2D_1
TGGGGAGGTGGGGG-CGGTGGACTGAGAAGAGATGATGGTGGGAGCCGGGGAGAAGCTCGGATGAGGAAAACGATGGTGG
GGAATTTGATGGGTGAGTGATAGGATAAGGATGCCTGGTAGCAACTGGATAAGGAAAGAGAGGGACACGTCCGTGGCTCC
GTGCGAAGAGATAAGGAAAGAGTGGGTCCACAGCTAGCATGAGGCGACAAGAGCGGAAGGAAGCCGGCCCAATTTCTAGC
CGGTCGTCCGGCGTTAAACGTTTCCCTTTACAATTAGATAGGATGTCCCAGGTTCGAATCGCAGCACTGGCGGTCTCTTT
TCTCTTTTTTGGAAAAACAGAAAAAAAAACAAATTAGATGGGCCCGCCCAGCAAGGACA-GGGGTGTGCGCCCGTTTGCA
GATAGTACTGTAATGGGCGCAGAGGGCGCTGAATAGGATTTAGC-ATCTACATATATTCTTGCCTCAAAAAAACATATAC
TCTTGCCTAAAAAAAACACGGCGGCGGCGGCTGAACTTGTATCTTTTCCCCTCTGCAACGAGAAGGGCATCCTGGCTGGG
GTCACCAACGGCACGGCGGCGGCTGAACTTGTATCCTTTCCCCTTTCTGTACACCTTCCTCCTCAAGACTCCCTCGAATC
GCTACTGAGAAGAATTCCTCTGTAAGCTTGTGAGACA-------------------------------------------
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GTGAGTTGGTCCCTAACACTGTCACGGCAACACGCACTGACGTACGC--ACCCATCTGTAT--AACTAACTTGGCATTCT
CGCCGATCCCTACGCCACGCCAAACAAGAGCGTTGTGCTGTATTCGCCAACGAGGGCGGCAAGGGGAGCGCCGGCCGGCC
GGCCGGCCGAGTAGTTTACTCGATCGTGGTTCCGTCCAAACGCCAAAACTAGACGACAAATCAAGCCATGTCCATCAGCC
CCCGGCCTCCCCGACGCTACCAACTGGAGTAGCAGCCGTTTCTATCTGTCACTATATAGCACACCTGCCCTTGTTGCCTC
AACACATTTCTCCTAACTTGGTAGTTACTACCCAAAACCCTAGAAGCTCCGCACAAACACCGACTCGTCACTTTTGAAAG
CAGTATATGGAGGGGGGCGACTTCCACAAGAGCGGCTCGCCAGAGGATACCGGCGGGCCAAGGCGGGCGCCGGCATACTA
CGAGTGCAGTTTCTGCAAGAGGGGGTTCACCAACGCGCAGGCGCTAGGCGGGCACATGAACATCCACCGCAAGGACCGCG
GTGGCAGTGGAGGCAAGTCTCGTGGGGCTGCGCCGCCGGCTGCCGGCCAGCAAGACGGCGGTGCCGGTGGGAATCAGGCT
CACTTGGGGCTTACCTTGGGAAGGAATGGGGACAGCAGGGAGGACGTGGACTTGGAGCTCCGGCTTGGCCACTACCCTTA
CAACTAGCAAGCCGGCT----GGCCGGCCGGCCGGCCATATAGATCATTAATGTTTGTTAACTGCTTGGAGGATTAATTA
GCTATACGGTACTCGCCAGTAGTACTGATTTGGTAGGTCATTTCCTACTTTGTTTGCTGTTTTATTTGATTTCGAATTTG
GTTAATTTGTTGTAGTTTGCTACTAGTGATACGAATGAAAGTAATGGATCAGAGTATGTGACCAATAATCGAGGACGCTG
ATGTGTGATTTTTCCTGTAA------------------------------------------------------------
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>chr2B_562
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GCTACTGAGAAGAATTCCTCTGTAAGCTCGTGAGACAGTGAGTTGGTACTTTCCTCCCCCTCCCCCCGCGTCTTCCCCTC
CAGGACGACTCGGGGGCCCCAAACCCTAGCCCCGCCGCAGCCCTCCTCCCTCCCCTCCCCCCTCGCCGCCGCCCGAGGCT
GCCGCTGGGCAAGCCCGGGGCACCGCCAAGGAAGGTGGCGGCGGGGCCTTCGCTGCTCTGCATCTGCTGCAGGGGGCTGC
ATGCTCCGGGGCGGCGGCCCTGGTCGGAGAGGCGTCACCGGCCTTCGGCAGGTGGTGGCGCGGGCGTGGACCGGCGACCT
CGGCCGTGGGGATGGCGGGCGAACCGGAGGACGTGAGCCAGGGCGTGCCTGCAACCTTGGTTGTTTGCGGCACCAGATCT
GGCCACCCCTGCATCCTCTATCTCTGGATGAGTCATGCCACGGCCGGATCCGGTTTGCTTCGTCGTGGGGCGCCGATTCT
CGTGCCATTGGTGAGTGGTTGGCGGGGACGTGAAGACCGGGAGAAATCCCAGGCCGGCCTTGCTGGTCTCGACGGCGGCG
ACGCCCGAGGGCGCCGCTCTCCTCCTTGGAGGCGCCGCCAGGGTATGTTCCTCTGTCCCCTCCCCCTCCTTGCCTACCTT
GTTGGGCGGTGGCGGCGCCCTTGGCGTCGCGCCCTTCCTGAAGGCGCCGTTTTTGGGAGCTAGGTGGGTGTGGGGTTTCT
CGGAGATAGGTTTCGTGTGCAGCGGCAACGGTAGCTGACCCCCCTCGACGACGGCGACTTCCTAAGTGACTATTTTGAGA
GCTCTACGGTCTGCTGCGGGGTGCCCTGCCTGGCCCATGGTTCCTCCTGGGCGAGAGGGGATCGGGTTCCCCTCCTACGA
CGGCCCTTCTCAGCGCACCTTGAGAGCTCTCCGGTACCTGCACTTCGGTTCTCAATGTCTTCTTGCGAGTTCTAGCTGTT
GCTCGACTTCGTCCGTTCCGGCAATTCTTCCTCTTTCATGACCAATCCGTGGGATTTGGCGGTGCCGTGCTCCTGGTGAT
CTGTTCGTGACTTGTTGGGCGAGCCTGGTTTCTTTCCAGATGCAGCCTTCCGGCGACTATCTGTCAGGTTCTAGGGTGAA
CTGCTCTCTTGTCAACGGTGCGGCGCCTTTCGAGCCAGGCGAGGAGCCAGGGGCCTTCTTTGACATTTGGAGCTGGGCGG
ATGTGTTGGGTCGGGGATGCTGGTGATTAGGCGACAGCGTGCCCTGCTTCGTCGTTGGACGTGTTGATCCAGTACGGGCA
TCCTTCTTCTTCCACGGCGTTCTGATCGCGTTGAGGACCTCTTCATCACCGAGCGGTGCTTCTCCCTGATGATTTTTGTT
AGCTTGGTGTGTAGGAGGCTTGTGAGCTGCTTTCCAGCGCCTTTATATCTTGCCATTTTCTTTTCTTTCTTGTGCTGGTT
TCGAGTTTGTAATCCTGGCCGGTTGATGGCTTTGTTAATTCAAAGCCGGTCTTCTTCTTGAGCCTTCGTTCCAAAAAACA
GTGAGTTGGTCCCTAACACTGTCACGGCAACACGCACTGATGTACGCAAACCCATCTGTATATAACTAGCTTGGCATTCT
CGCCGATCCCTACGCCACGCCAAGCAAGAGCGTCGTCCTGTATTCGCCAACGAGGGCGGCAAGGGAGC-----GCCGGCC
GGCCGGCCGAGTAGTTTACTCGATCGTGGTTCCGTCCAAACGCCAAAACTAGACGACAAATCAAGCCATGTCCATCAGCC
CCCGGCCTCCCCGATGCTACCAACTGGAGTAGCAGCCGTTTCTATCTGTCACTATATAGCACACCTGCCCTTGTTGCCTC
AACACATTTCTCCTAACTTGGTAGTTACCACCCAAAACCCTAGAAGCTCCGCACAAACACCGACTCGTAACTTTCGAAAG
CAGCATATGGAGGGAGGGGACTTCCACAAGAGCGGCTCACCAGAGGATACTGGCGGATCAAGGCGGGCGCCGGCATACTA
CGAGTGCAGTTTCTGCAAGAGGGGGTTCACCAACGCGCAGGCGCTCGGCGGGCACATGAACATCCATCGCAAGGACCGCG
GTGGCAGTGGAGGCAAGTCTCGTGGGGCTGCGCCGCCGGCTGCCGGCCAGCAAGACGG---TGCCGGTGGGAATCAGGCT
CACTTGGGGCTTACCTTGGGAAGGAATGGGGACAGCGGGGAGGACGTGGACTTGGAGCTCCGGCTTGGCCACTACCCTTA
CAACTAGCTAGCCGGCCGGCCGGCCGGCCGGCAGGCCATATAGATCATTAATGTTTGTTAACTGCTTGGAGGATTAATTA
GCTATACGGTACTCGCCAGTA---CTGATTTGGTAGGTCATTTCGTACTTTGTTTGCTGTTTTATTTGATTTCGAATTTG
GTTAATTTGTTGTAGTTTGCTACTAGGTATACGAATGAAAGTAATGGATCAGAGTATATGACCAATAATCGAGGAATCTG
ATGTGTGATTTTTCGTGTAAATATGCACGTCGATTGGGGCCATGGATGAGTATG--------------------------
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>SNPs
--------------S--------------------S--------------------------------------------
S--------------S-S--S-------------------------------------------------S---------
---------------------------------------S-----S-------S--------------------------
------S------------S-----------------------S--------------------------S---------
----------------------S---------S-----------S------------S-S--------------------
-------------S-S-------------S--------------S-----------S-----------------------
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---------------------------------------------------S----------------------------
---S----------------------------------------------------------------------------
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-------S------------------------------------------------------------------------
------------------------S-------------------------------------------------------
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------S--------------------------------------------S----------------------------
--------------------S-----------------------------------------------------------
----------------------------S----S---------S-------SSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_636
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--------------------------------------------------------TCCTCCTCAAGACTCCCTCC----
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>reverse_3659
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----------------------------------------------------------ACGAGCACAACACCGAGATT--
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