>input_sequence_83964
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---------------------------ATGACGATGTCCGGGCGGTGCGTGGCGGCCACGGGCGCCCTCATGGCGTGTGG
CCACTGCGGCGGCCTCCGCCGCGTCAGGATGGAGGGCGAGTTCGTCTCCTGCGACTCGTGCGGCAAGGTCCTGCAGCAGC
GGGGCCGGAAACAGCGCGCCGTGGAGGTGGAGGCTCGGCGGCAGCTCCGGCGGCGCTGGTTGGGGGCCAGGAAGAGAAGG
GACGGCCGCGCGGCGGCTGGTGGCGGAGGCTTGGTCGTCGGAAGGGAAGCATCTGATGCCGAGTCCGACACTGGTTGTGT
TTGTTTCGTGGAATCGTCGTCGTAG-------------------------------------------------------
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>chr1D_1_TraesCS1D01G247400
TGCAGGGAACGCAGAGCCGGCAAGGGCAGGCTGGACAGCCTGCTGGAATTTTGAAGAAGCCTGCTACTGAAGGTGATTCA
AACCCATCAAAACAGGTGAACCTTGTCGAACCTCTGCTGGAAAATAGGAGGTAATTGTAGATGTATCACATAAATAGAGC
GACGGGACGCATGAAAGCATGTTGTGATGTTGCTATATCCAGTGAGAGTAAATACCAGTTTGCTCGCTGTAAATTTCAAC
AGTAGCAATTTGAACCTTGTCATGAATGTCACTATGTCAGCGTTGAGTTTCGTCACTGGGACAGTAGCAACTACTGACAT
TTGGGAATCATAGACTTGGAACTAGTGCAAATGATAAATTAGATGTGTCCCGCAGACTTTGTGAATGTCGAGCACGTGGA
ATATTATAAGGTGGAATGCCTACACGGTGTGCCTGACTTCAAATCGACTATTGGTGTAGTCAACAAAATCCCGGCTCATG
TACGAGCATTTTACAACATTTTGTTAGCATAAGTTTTTTTTAATTAATTTTGGAGTATATGTTTCTGTTTCAA-------
--------------------------------------------------------------------------------
------------------------------------GTGGGGTTGAGACGTT----------GCACCGGAGAGAATATTG
CGTGCGATTTTCATGCTTGTTGGAAAATACGAGCGATCCGAGTGGGAAGTGAAGTCCAGACCGACATAGCCTTGCTTCCG
CCA------------CCCCTTTCCGGATAAAATAACGCTGGTCTTCCTACGCTGCATACTAGGTTACGTGTGATCTACTC
TTCCTATTTCTCGATCCTTCCTTCCACTCTGGTCTTTTTTATAAGAAAAGAATGAACTTGGCTGCCAAGATACCTGCA--
ATCCTGGCAACTAAAACGCGTCGGGTTTCCTATCCGACTCGGTTCGGGGCCTCGCCTTACATATACGCTACCATAATTCA
CGAAATGGGACCCGAGCAATCGAGCACAAGGATGCGCTGACGAATCCGGCCGATCGACCCCCCAAGCAGCGGCGCCCCCG
ACGCGCGCGCCTCCGTACGTGGTAGAGATGACGATGTCCGGGCGGTGCGTGGCGGCCACGGGCGCCCTCATGGCGTGTGG
CCACTGCGGCGGCCTCCGCCGCGTCAGGATGGAGGGCGAGTTCGTCTCCTGCGACTCGTGCGGCAAGGTCCTGCAGCAGC
GGGGCCGGAAACAGCGCGCCGTGGAGGTGGAGGCTCGGCGGCAGCTCCGGCGGCGCTGGTTGGGGGCCAGGAAGAGAAGG
GACGGCCGCGCGGCGGCTGGTGGCGGAGGCTTGGTCGTCGGAAGGGAAGCATCTGATGCCGAGTCCGACACTGGTTGTGT
TTGTTTCGTGGAATCGTCGTCGTAGTGATTGCGTCGTCCTCAACTGATGTTTTAGAGCAGTTTGTGGATTCTGGGCTAGA
CAACGTCACTGAACAAGATATCGACGATAATGCTGGGAAAGTTGCAATTTAGCCTGTTTGTAATATCCTGGCTGAGTTTA
ATCTTTGGAGGACAGCCAGACGGGTGGGAGTAGATTAGCGTGTGAGTTTTGGTGGGTGAACTGCTGACCTAACCTTTCAC
TTGTTATAGGCAGGGGCCTGTTGTAAACATCTTTGCTATATTTTTCTTTTGACAAAAATGATATCTTTGTTATCTATGGT
CATTAGGGGCATCTCGAACGGCAACCCGTAATATTTTTTTCCACATCCGTCCGTGAACAGAGGGACCAGTCAGCGTACAC
GGATGCGGGAGGACAACATTCAACGCTA------TACATTTCAAACTATTTTTTCAACAAACCGGATGAAATTCATGCAA
ACACGGCCGGATTTTATACAAACATGA--------------------CGGATTTCATTACATTTAGAACATTTACAACAA
AAAAAGCCCGCCCCTAAACCTATCCTACGGCATCGGCGCCCGGTGTCCAAGCCCGTGTCCTTCTTCATCTGTCGTCTCCA
TGAGCACCGACGATAAGGCTGATGAAGTGAAGGTGCAGTCTCCGGCGAGGAAGAGTAGAACAAGGGAGACAGACCGGCCC
ACATGGGACACAAGGCACCTCCGCCTCTCGTGGCCTACTCATTCTCGAAGGAGTCCGTGACCTGTACGTCACCGATGGAC
GTGAGTTATATATAGTGAAGTGGAGTTAGCATTATAAGGTAAGACACTAAAACATCTTTACAAGCGATGGAAATGCAGCT
GAGGTTTTATTGTAGTTGAACGAAACCATCATCGATGGAAGAACGGCTAAAAATGATGATAAGAGCATAGAGATAATGCA
ACGCTCGAGTCGAGCTAGAGTTGAGAAGCTGATAAAAGAAAAGACACAAACCTCCTTCATAAACAAGACAAAAACTGGTT
GTGTCATCCTT
>chr1A_1
TGCAGGGAGCGCAGAGCCGGCAAGGGCAGGCTGGACAGCCTGCTGGAATTTTGAAAAAGCCTGCTACTGAAGGTGATTCA
AACCCATCAAAACAGGTGAACCTTGTCGAACCTCTGCTGGAAAATAGGAGGTAATTGTAGATGTCTCGCATAAATAGAGC
GACGGGACGCATGGAAGCATGTTGTGATGTTGCTATATCCAGTGAGAGTAAATACGAGTTTGCTCGCTGTAAATTTCCAC
AGTAGCAATTTGAACCTTGTCATGAATGTCACTATGTCAGCGTTGGGATTCATCACTGGGACGGTAGCAACTACTGACAT
TTGGGAATCATAGACTTGGAACTAGTTCAAATGATAAATTAGATGTGTCCGCAA-ACTTTCTGAATGTCAAGCACGTGGA
ATATTATAAGGTGGAATGCCTACACGGTGTGCCTGACTTCAAATCGACTATTGGCGTAGTCAACAAAATCCCGGCTCATG
TACGAGCATTCGACAACATTTTGTTAGCATCAGTTTTTTTTTTAAA----TGGAGTATATGTTTCTCTTTCAA-------
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------------------------------------GTGAGCTACTGTTGAATTTTATTTTGGCACTGGAGAGAATATTG
CGTGCGATTTTCGTGCTTGTTGGAAAATACGAGCGGTCCGAGTGG-AAGTGAAGTCCAGACCGACATGGCCTTGCGTATG
CCAAGGCTTCCACCACCCCTTTCCGGATAAAACAACGTTTGTCTTCCTACGCTGCG---TAGGTTACGTGTGCTCTACTC
TTCCTATATCTCGATCCTTCCTTCCACTCTGGTCTCTTTC-TAAGAAAAGAATGAACTTGGCTGCCAAGATACCTGCACA
A---------CTAAAGCGCGTCGGGTT-CCCATCCGACTCAGTTCCGGGCCTCGCCTTACATATACGCTACCATAATCCA
CGAAACGGCAGCCGAGCAATCGAGCACAAGGATGCGCTGACGAACCCGGCCGATCGACCCCCCGACCAGCGGCGCCCCCG
ACGCGCGCGCCTCCGTACGTGGCAGAGATGACGATGTCCGGGCGGTACGTGGCGGCCACGGGCGCCCTCATGGCGTGCGG
CCACTGCGGCGGCCTCCGACGCGTCAGGATGGAGGGCGAGTTCGTCTCCTGCGACTCGTGCGGCAAGGTCCTGCAGCAGC
GGGGCCGGAAGCAGCGCGCCGTGGAGGTGGAGGCTCGGCGGC------GGCGGCGCTGGTTGGGGGGCAGGAAGAGACGG
GACGGCCGCGCGGCGGCCGGTGGCGGAGGCATGGTCGTCGGACGGGAGGCATCTGATGCCGAGTCCGACACTGGTTGTGT
TTGTTTCGTGGAATCGTCGTCGTAGTGATTGCGTCCTCCTCAACTGATGTTTTAGAGCAGTTTGTGGATTCTGGGCTAGT
TG------------------------------------------------------------------------------
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---------------------------------------------------------------TCTTTGTTATCTATGGT
CATTAGG-ACATCTCCAACGGCAACTAGCAA-ATTTTCTCCCACATTCGTCCGTGGTCAGGGGGACCAGTCCACGAACAC
AAATGCGGGAGGAGGACATCCAGCGCTAGCCTCATACATTTTAAAC--TTTTTTTATCAAACCGGATGAAATTCATGCAA
ACATGCCCGGATTTCATACAAACATGACGAATTTCATACAAATACAGCGGATTTCATTACATTTAGAAAAAAAAGAT---
-------CCACCCCTAAACCTATCCTACGGCGTCGGCGCCCGATGTCCAAGTCCGTGTCCTCCTTCATCCGTCGTCTCTG
TGAGCACGGACAATAAGACCGATGAAGTGAAG-TGCAGTCTTCGGCGAGGAAGAGTAGAACATGGGAGACAGACCTACCC
ATATGGGACACAAGGCACTGCCGCCTCCCGTTGCCTACTCATTCTTGGAGGAGTTTGCGACCTGTCCGTCGCCAATGGAC
ATGAGTTATATATAGTGAAGTGGAGTTAGCATTATAAGATGAGACACCCAAACATTTTTACAAGCGATGGAAATGCAGCC
AAGG-TTTACTGTAGTTGAACGAAACCATCATCGATGGAAGAACGGCTAAAAATGATGATAAGAGCATAGAGATAATGCA
ACGGTGGAGTCGAGGTAGAGTTGAGAAGCTGATAAAAGAGAATACACAAATCTCCTTCATAAA-----------------
-----------
>chr1B_1
TGCAGGGAGCACAGAGCCGGCAAGGGCAGGCTGGACAGCCTGCTGGAATTTTGAAAAAGCCTGCTACTGAAGGTGATTCA
AACCCATCAAAGCAGGTGAACCTTGTCGAACCTCTGCTGGAAAATAGGAGGTAATTGTAGATGTATCGCATAAATAGAGC
GACGGGGCGCATGGAAGCATGTTGTGATGTTGCTATATCCAGTGAGAGTAAATACGAGTTTGCTCGCTGTAAATTTCAAC
AGTAGCAATTTGAACCTTGTCATGAATGTCACTATGTCAGCGTTGAGTTTCATCACTGGGACGGTAGCAACTACTGACAT
TTGGGAATCGTAGACTTGGAACTAGTGCAAATGATAAATTAGATG-GTCCCGCAGACTTTCTGAATGTCGAGCACGTGGA
ATATTATAAGGTGGAATGCCTACACGCTGTGCCTGACTTCAAATTGACTATTGGTGTAGTCAACAAAATCCCGGCTCATG
TACGAGCATTTTACAACATTTTGTTAGCATCAGTTTTTTTTT-AAA----TGGAGTTTGTTCCGTAAATCTTAAGATGAT
ATGCCGGCTTAGTGTCTTGGAGGTGCTCATAGTGTGTGTGTGTGTGCGCGCGTTCATATGGGTGAATGTATGCGCATATT
TATAAGCGTTTGCATCTGTATTGTGTTAAAGAAAATGTGGGGTTGAGACGTT----------GTACTGGAGAAAATATTG
CGTGCGATTTTCATGCTTGCTGGAAAATACGAGCGGTCCGAGTGG-AAGTGAAGTCCAGACCGACATGGCCTTGCGTATG
CCAAGGCTTCCACCACCCCTTTCCGGATAAAACAACGTTTGTCTTCCTACGCTGCA---TAGGTTACGTGTGCTCTACTC
TTCCTATATCTCGATCCTTCCTTCCACTCTGG--TCTTTC-TAAGAAAAGAATGAACTTGGCTGCCAAGATACCTGCA--
A---------CTAAAGCGCGTCGGGTTTCCGATCCGACTCGGTTCCGGGCCTCGCCTTACATATACGCTACCATAATCCA
CGAAACGGGAGCCGAGCAATCGAGCACAAGGATGCGCTGACGAACCCGGCCGGTCGACCCCCAAACCAGCGGCGCCCCCG
ACGCGCGCGCCTCTGTGCGGAGCAGAGATGACGATGTCTGGGCGGTACGTGGCGGCCACGGGCGCCCTCATGGCGTGCGG
CCACTGCGGCGGCCTCCGCCGCGTCAGGATGGAGGGCGAGTTCGTCTCCTGCGACTCGTGCGGCAAGGTCCTGCAGCAGC
GGGGCCGGAAGCAGCGCGCCTTGGAGGTGGAGGCTCGGCGGC------GGCGGCGCTGGTTGGGGGCCAGGAAGAGACGG
GACGGCCGCGCGGCGGCCGGTGGCGGAGGCATGGTCGTCGGACGGGAGGCATCTGATGCCGAGTCCGACACTGGTTGTGT
TTGTTTCGTGGAATCGTCGTCGTAGTGATTGCGTCGTCCTCAACTGATGTTTTAGAGCAGTTCGTGGATTCTGGGGTAGC
CAACCTCACTGAACAAGATATCGACGATAAAGCTGGGAAAGTTGCAATTTAGCCTGTTTGTAATATCCTGGCTGAGTTTA
ATCTTTGGAGGACAGCCAGACAGGTGGGAGTAGATTAGCGTGTGAGTTTTGGTGGGTGCACTGCTGACCTAATCTTTCAC
TTGTTATAGGCGGGGGCCTCTTGTAAACATCTTTGCT---TTTTTTTTTTGACAAAAATGATATCTTTGTTATCTATGGT
TATTAGG-GCATCTTCAACGGCAACCCGCAA-ATTTTCTTCCACAGCCGTCCGCGAAC----------------------
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>SNPs
--------S----------------------------------------------S------------------------
-------------------------------------------------------------------S------------
-------------S-----------------------------------------S------------------------
---------------------------------------------------S----------S-----------------
------------------------------------------------------------S-------------------
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------------------------------S----------SSSS-SSSS----------------S-------------
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------------------------------------------------------------------S-------------
-----------------------------------S---------S---------------------S-------S-SS-
--------------------------------S----S-S----------------SSS-------------S-------
-------S---------------------------S---SS---------------------------------------
-SSSSSSSSS-----S--------------S--------------S-------------------------------S--
-----S----S---------------------------------S--------------------S--------------
----------------------S-----------------------S------------------------------S--
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----------S-------------------------------SSSSSS-----------------------------S--
-----------------S------------S-----------S----S--------------------------------
-------------------------------------------------------------------------------S
----S-------------------------S-------------------------------------------------
---------------------S------------------------------------S-------------S-------
-----------S-------S-----------------SSS-----S----------------------------------
-------S-------S------------S--S-----S----------------------S----------SS--S----
SS-----------SS----S--S------------------S----SS------S-S-----------------------
---S-S--------S-----------------------------------------------------S-SSS-S-SSSS
SSSSSSS--S---------------------S----------S--------S---------S-------S--------SS
-------S---S-----S-S------------S--------S--------------------S------------SS---
-S----------------SS-------S---S-------------S-S------SS-S-------S----S--S------
S-------------------------------------S-S------SS------S-----------------------S
S---S----S----------------------------------------------------------------------
---S-S--------S------------------------S--S-------S------------SSSSSSSSSSSSSSSSS
SSSSSSSSSSS
>forward_799
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-----------------------------------------------------------ACCGACATAGCCTTGCTTCC-
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>reverse_2122
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-----------------------------------------CCGGCGAGGAAGAGTAGAAC-------------------
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