>input_sequence_83963
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--------------------------------------------------------ATGGCGAGGAAGGCAGCGGCAGCG
GCAGCGGCCATGGACGGCAAGAGCTCCGAGCTCGCGAGGGCCGTGGCGGAGGCGGAGGCGCGGGAGGAGCGGCTGCGGCG
GGAGCTGGAGGCGGCGCTGGCGCGGGTGGCCGTGGCGGAGGAGGCCGAGGAGCGGCTGTGCGTGCAGCTCGGCGAGCTGG
AGGCGGAGGCCATGACGCAGGCCATGGAGTACCAGCAGCACGTCAGGGCGCTCTCCGAGAGGCTCGCCCTCATGGACGGC
CTGCTCAGGTCCTCCGGCCTCCACAGCGCCGTCGTGCAGTCCGGCCTTCACTGA--------------------------
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>chr1D_1_TraesCS1D01G177700
ATATGCGTCAGGAGATCCGAGACCCGCAGGTGCATCAACAACTGCAGCAGGATCTGGTGGAGCACCTATGGAGGCTCAAG
GGCAACGCCTGACTCGACGCGTGATGAAATATGAGTTTTTATTTGTAAAACTATATAATTTGTATTGAACTATTTGATCT
CTATTGATAAAAAATAACTTCTTTTGAATTTGTGCCGAAACACGCAAAATATGGGCCGAAATTGGTCAATTTGCGCTGAT
AGTAGGCCAATTTGCGCCGAAAGTGGGCTGAAAAGTGGGCCAATTTGCGCCAAGGTTGGCTGAAATCGGCGCCTGGGGAC
GACCTGGGGGCGGCGGCTGGGAACCCGATCGCCCCCACGTTGATTTTTCGGCCGGCGCGCCCCGAGGCGGCGCTATTTCA
AGCCCCTGGGGGGGCGAACGGCTAGAGATGCTCTTATAAACACACGTGTTGTGAATATTTATAAACAAACAGAAATATTT
AAATTCAACCCTTTTTATAAGTTGTATCATGGGAGCATTTAAGCGATGGTATCACTCAATATTCACCCTCATATATCTCT
CCAATCTCCACCCTCCGGCGCTCGATCGAACGGCCAGAATGTGCTAGACAAATCAAGCAAAAGTTGTGGTTGCTGGTGTT
TGACTATCCAGCCGCCCACCACGTTCACCTCTCAGCCAGGAGGAAATGCAATAAGAGAGAGACGTACGGGCAAAGCATCG
AATTATCAACGA-TGATGACCTCACCTTATATGTAGCAGCGCTGTAGACGTACGCCGACACCTAACGTGCCCGATTGGTT
CATTGAACCTGGACACATTCCCGCTTTCCCTCCGCAGCTGCAGC---------CGGCCCGGCCTATATAAAAGGCGCCAC
AACCTGA----GAGGGATCCAGAT-CCAACGAACTCGTGAACACGTCTGTCTATAGTGTACGCATCCTCCTCAAAGAAA-
AAAAAGGTCTATAGTGTACGCATACTCTCCCACTCACACCCGAGAAGTTAGGAGGCATGGCGAGGAAGGCAGCGGCAGCG
GCAGCGGCCATGGACGGCAAGAGCTCCGAGCTCGCGAGGGCCGTGGCGGAGGCGGAGGCGCGGGAGGAGCGGCTGCGGCG
GGAGCTGGAGGCGGCGCTGGCGCGGGTGGCCGTGGCGGAGGAGGCCGAGGAGCGGCTGTGCGTGCAGCTCGGCGAGCTGG
AGGCGGAGGCCATGACGCAGGCCATGGAGTACCAGCAGCACGTCAGGGCGCTCTCCGAGAGGCTCGCCCTCATGGACGGC
CTGCTCAGGTCCTCCGGCCTCCACAGCGCCGTCGTGCAGTCCGGCCTTCACTGACGAACCGAATCTCACCATCCGTTTCC
TTGCTTATTACTACTATTATGTGCGATCATGCAAGGCTGTACCTGTACGGGTTCCTAAAT--TTTCCGCCGGCGTGTGTT
TGATGCCAACTCGTGCGTGGTGGTGGTGGAGCGTAGCGTAGGATGTACTGTACATTTTTCTTCTTCTTGATGAGA--TGT
AGGAGTATATAATGTCGTTTGTGTGGTACTACGAATATCTTGGGAGGACATCGAAATGTTGCCCCCGATCTGATGCAAAC
TTGAGCTGACGCATGCATTCATCTAATATCACACGCAGCGGATTCCTTGACAACGATCGAGCTTATGTGCATATAAAACG
AGATGATCACGAGCCAGATCCATTGGCGCAGAGTGCGTCGCGCTGGAGGACGACCCACAGGACGTTCGTTCTCTAAATTT
TCCTTCGATTGAATTGTTCGACTTTCAGGTTTCACCATCCTTACGAGCAGCCAGTTCCCAGGGGAAGCCGATGTTTCGGT
GTTCTTGACAAGTTCCTGGTTTCTCCTTGCCGCCAA------CATATTCTGGTCGAGAGATTGCTGACCACGTTGCCAAG
CTGTGTGCTGCCAACAGTTATACTATAGCAAGGAATTCTACTCGCAACGCGTATGCCCTGCTACGGAGTTC---------
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-------------------------------------------------------------------------TTCAAAT
CAATTTGGATCGATTAGATGGCACTACTGGAAAACGAGACGTCTGACGCCACACAGAAAACGACCGCACGAGCTGCTCAA
TTAAGCAACAAAAATA-AGGAAACTTCGGACCAACATCAT---ACAGCGCAAAGTTGACTGATATAATGCAATTGGAAAT
AGTAATGGCAAATCAGGGACCTCGGATATTTGACAGCAGCACGCATGTAATGAAAAAGAGAGGTATGAAATGGAGCATGG
AACTTTTGACCCTGAAAAATTGTCAATCTTCCAGATAGCTGACTGGAGGTGTGAAATGGCCATACTCTCCAGAAACGAAA
ACAATTCCACGGAATTACCATGGACGCGGA
>chr1A_434
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---------------------------------TTATAAACACACGTGTTGTGAATATTTACAAACAAACAGAAATATTT
AAATTTAACCATTCTTTTAAGTTTTATCATGG-AGCAGGTAAGCAATGGTATCGCCCGATATTCACCCTCGTCTGTCTCT
CCAATCCCCACTCTCCGACGCTCGATCGAACGGCCAGAATGTGCTAGACAAATCAGGCAAAAGTTGTGGTTGCTGGTGTT
TGACTATCCATCCGCCCACCACGTTCACCTCTCAACCAGGAGGAAATGCAATAAGAGAGAGACGTACGGGCAAAGCATTG
AATTATCAACGA-TGATGACCTCACCTTATATGTAGCAGCTCTGTAGGCGTACGCCGACACCTAACGTGCCCGATTGGTT
CATTGAACCTGGACACATTCCCGCTTTCCCTCCGCGGCGGCAGCCGGCCCGAGCGGCCCGGCCTATATAAAAGGCGCCAC
AACCTGATCAAGAGAGATCCAGATCCCAGCGAACTCGTAAACACGTCTGTGCATAGTGCTAT------------------
----------------TACGTATACTCCCCCACTCACCCCCGAGAAGTCAGGAGGCATGGCGAGGAAGGCA------GCG
GCAGCGGCCATGGACGGCAAGAGCTCCGAGCTCGCGAGGGCCGTGGCGGAGGCGGAGGCGCGGGAGGAGCGGCTGCAGCG
GGAGCTGGAGGCGGCGCTGGCGCGGGTGGCCGTGGCGGAGGAGGCCGAGGAGCGGCTGTGCGTGCAGCTCGGCGAGCTGG
AGGCGGAGGCCATGACGCAGGCCATGGAGTACCAGCAGCACGTCAGGGCGCTCTCCGAGAGGCTCGCCCTCATGGACGGC
CTGCTCAGGTCCTCCGGCCTCCACGGCGCCGTCGTGCAGCCCGGCCTTCACTGACGAACCGAATCTCATCATGCGTTCCC
TTGCCTGT------TATTATGTGTGATCATGCAAGGCTGTAGTGGTTGTTAAATTTTTCTCCTTTCCGCCGGCGTGTGTT
TGATGCCAACTCGTGCGTGCTGGTGGCGT---GTAGTGTAGGATGTACATTTCTTTTCTTTTCTTTTTGAGATGTACTGT
------ATATAACGTCGTTTGTGTAGTTCTACATATCTCTT--GAGAACATCTTAATGTTGCCCCCGATCTGTTGCAAAC
TTGAGCTGACGTATGCATTCACCTAATATCACACGCAACGGATTCCTTGACAACGATCGAGCGCATGTGCATATATACAT
GAGGAGCACACGCAAATGAGGTTCTTGATATGAAGACATAAAGAAATGAACTGGTCCCACATATAAATTCGAAAAATTAC
CAGTGCTATCCCAAGTTCTCAACTCCATTAA-------------------------------------------------
-------------------TCTTTCCTTCCCGCGAA------AAAATAACTCCATTAATCTTGCTTCAACTCCGTAACAA
AGCATAAAGCATATGCATTACGAGTAAAATTCCTTGACAAGCTATAATTGTTGGCGGCACACCGCGTGGCAACTGGTCAT
CAATCTCCCGACCAAAACTAATAATGTTGGCAACAAAGGCGGCAAGGAAAAACCATGAACCAGTCAAAAACACCGAAAAC
ATCCGTTTCACCTCGGAAATTTCGGCCGAAACTGACTTCTCGTAAGGATGATGAAACTTGGAAGTCTGAACAATTC-AAT
CAATTTGAATCACCTAGACAGCACTACTAGAAACA-AGACGTGTGACACCACGCAGAAAACGACCGCACCAGCTGCTCAA
TTAAAAAAGAAATATATAGGAAACTTCGGACCTCGGCTATTTGACAGCACAAAGTTGACTGGTTTAATGCAATTGGAAAT
TGCAATGGCAAATCAGGGACCTCGGACATTTGACAGTAGCATGCATGGA--------------------------CATGG
AACTTTTCATCCTGAAAT-TTGTCAATCTTCCAGATAGCTGACTGGAGGTGTGAAATGGCCATGCTCCCCAGAAACCAAG
ACAATTCCACGGAATTACCGTGAACGCGGA
>chr1B_529
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------------------------------------------------GTATCACCCGATATTCACCCTCGTATGTCTCT
CCAACCTCTACCCTCCGACGCTCGATCGAACGGCCAGAATGTGCTAGACAAATCAAGCAAAAGTTGTGGTTGCTGGTGTT
TGACTATCCATCCGCCCACCACGTTCACCTCTCAACCAGGAGGAAATGCAATAAGAGAGAGACGTACGGGCAAAGCATCG
AATTATCAACGAATGATGACCTCACCTTATATGTAGCAGCGCTGTACACGTACGCCGACACCTAACGTGCCCGATTGGTT
CATTGAACCTGGACACATTCCCGCTTTCCCTCGGCAGCTGCAGC---------CGGCCCGGCCTATATAAAAGGCGCCAC
AACCTGA----GAGGCATCCAGAT-CCAACGAACTCGTAAACACGTCTGTCTATAGTGTACGCATTCTCCTCAAAGAAAA
AAAAAGGTCTATAGTGTACACATATTCTCCCACTCATCCCCGAGAAGTTAGGAGGCATGGCGAGGAAGGCA---------
GCAGCGGCCATGGACGGCAAGAGCTCCGAGCTCGCGAGGGCCGTGGCGGAGGCGGAGGCGAGGGAGGAACGGCTGAGGCG
GGAGCTGGAGGCAGCGCTGGCGCGGGTGGCCGTGGCGGAGGAGGCCGAGGAGCGGCTGTGCGTGCAGCTCGGCGAGCTGG
AGGCCGAGGCCATGACGCAGGCCATGGAGTACCAGCAGCACGTCAGGGCGCTCTCCGAGAGGCTCGCCCTCATGGACGGC
CTGCTCAGGTCCTCCGGCCTCCACAGCGGCGTCGTGCAATCCGGCCTTCACTGACGAACCGAATCTCATCATGCGTTTCC
TTGCTTATTACTACTATTATGTGCGATTATGCAAGGCTGTACCTGTACGGGTTTCTAAAT--TTTCCGCCGGCGTGTGTT
TGATGCCAACTCGTCCGTGGTGGTGGAGC---GTAGTTTAGGATGTACTGTACATTTTTCTTCTTCTTGATGAGA--TGT
------ATATAATGTTGTTTGTGTAGTACTACGAATCTCTT-GGAGGACATCTAAATGTTGCCCCCGATCTGATGCAAAC
TTGAGCTGACGCATGCATTCATCTAATATCACACGCAACGGATTCCTTGACAACGATCGAGCTTATGTGCATATAAAACG
AGATGATCACGAGCCATATCCATTGGCGCAGAGTGCGTCGCGCTGGAGGACGACCCACAGGACGTTCGTTCTCTAAATTT
TCCCTCGATTGAATTGTTCGACTTTCAGGTTTCACCATCCTTACGAGCAGTCAGTTCCCAGGGGAAGCCGATGTTTCGGT
GTTCTTGACAAGTTCCTGGTTTCTTCTTGCGGGTGCGGCCAGCATATTCTGGTCGAGAGATTGCTGACCACGTTGCCAAG
CTGTGAGCTGCCAACAGTTATACTATAGCAAGGAATTCTACTTGCAATGCATACGCTCTGTTACGGAATTC---------
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-------------------------------------------------------------------------TTC-AAA
CAATTTGAATCGACTAGATGACACTGCTAGAAAACGAGACGTGTGACGCCACACAGAAAACGACCGCACCAGCTGCTCAA
TTAAGCAACAAAAGTA-AGGAAACTTCGGACCAACACCAT---ACAGCACAAAGTTGACTGATATAATGCAATTGGAAAT
AGTAATGGCAAATCAGGGACCTCGGATATTTGACAGCAGCACGCATGTAATGAAAAAGAGAGGTATGAAATGGGGCATGG
AACTTTTCATCCTGAAAAAATGTCAATCTTCCAGATAGCTGACTGGAGGTGTGAAATGGTCATGCTCCTCAGAAACCAAG
ACAATTCCACGGAATAACCATGAACGCGGA
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------------------S------------------
-----S----S--S--S------S--------S----SS-----S----------S-S------------S---S-----
-----------------S--------------------------------------------------------------
----------S-----------------------S---------------------------------------------
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--------------------------------------S--------------------------S--------------
-------------------------------------S---------------------------------SSSSSS---
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--------------------------------------------------------------------S---S-------
-----------------------------------------------------S--------------------------
--------------------------S-SSSS----S-------------------------------------------
SSSSSS------------------S-----------S----S----------S---------------------------
-------------------------------------S------------------------------------------
----------------S---------------------------------------------------------------
--------------------------------------------------S-----------------------------
---------------------------------S----------------------------------------------
-----S------------------------------------S----S--S--S--S---S-------------------
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----------------------------------------------------------------------------S---
-------S-----S--------------S-------------S--------------------------S----------
------------------------------------S-----------S-------------------------------
-------------------------------------------------------------------------S------
-------S-S-----------------------------------------------------S---S--------S--S
----------------------S-------
>forward_109
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---------TGACTCGACGCGTGATGAAA---------------------------------------------------
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>reverse_2203
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------------------------------------------CTGACGCCACACAGAAAACG------------------
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