>input_sequence_83958
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----------------------------------------------------------ATGTCGACGGAGAGCAGGGCGA
AGAGGAGCGGTTCGATGGCCGGCGGCGGAGGAGGGCGGACGCGGGGCGCGCAGGGGAAACGGGTGGGGGCGCAAGGGCAG
GGGGCGTCAGCCGCGACCGCGGGGTACTTCACGGCGGAGCTGGCCGTGCTGTTCCTCTGCCTGACCGCGCTGCTGGTGTT
CCTGCCGCTGGTCCTGCCGCCGCTCCCGCCGCCGCCGTCGCTGCTGCTGCTGGTCCCCGTGGGGCTTATGGCCGTCCTAC
TCGCGCTGGCCTTCGTGCCGTCCGACAGCCGGAGCATCGCCTCGTCGTGCCATTGA------------------------
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>chr1B_1_TraesCS1B01G271500
ATTCGTATGCAATCCCGTCCAATATGCTCCAAATCCAGCCCCAGCCAACTTGCGCTCGCTCG-CTTTACCATAGAGATAT
GCAAACACGGCGCGCGCC--TATGTATCCTAAGAAAAGCCGCTGCTCTCTGAACCCAGCAT-ATGCTGATACGCTGATAC
GATTCTGGGAGTACAGCACGGTCGCCTTGTTTAATCGCGCAGAAATATCCGGTGCATGCACGA--TGCATGGTTTCCGGC
CGGTCCGACTATCGTTAGCT-TGATCTTGTCTTGCCCCTGCCAAGGCCCAACGGGA---GGGAGTATCGGTGAAGAGATA
CTGCACATCTCGCCTGAGATCTTGCAACGACCGGCTATCAATCCAGCCAGTACATCGAGGCCATTACCGGAAACTAATTA
CTAG----------------------------------------------------------------------------
----------------------------------------------------------------------------TACT
AAAGAACTTCAAATCATCCTTACTGGAGACTGTCAACAGGGCATAATTATACTCCATTAGGTAAGCTAGCTATCTAGCTA
GCACCCCACCCGATAAGA---AAAGAGACCACGAGACGAGATTGTTGGACGGGCGGGATTCTCTCC--GCAGGGGGGAGG
AACCTGCATAACCTTAACAAGACTGAATCGGAGGCCATGTGAGGCTGTCTCGTCTGCTTGCATCACCAGTGGGAAAAGCA
GCCATCAAAGGATGACCAGCTGACCCTAGGTGCCAAAG-CGCCCGATACACTGCACCCGGGCCACCAAATCTTCAGGGTC
TGCCCCCCAACACAGGCCAATTGGCCGACGGGTACAGTTGCGCATCCGGGGCATCCTATAGACCCCGCACTCGCGCAG--
----CCACGCCCACGCCACCAGTATCTGTCCTTGGCCATTGCGCCGCCCGAATTCAGAGCTATCTTTCATCACATTCCGT
TGCAGCAAGTAGCAAGCCCTTCTGGTTAGTCCTTATATGTACCACGTACAAGTTGTCTGCTGCTGATACAATCAAGCAGT
GGCGGACATACTCGTTGCTCTCCGCTTGGAATTGGGACAGTCCACGC----CGATCGAATGTCGACGGAGAGCAGGGCGA
AGAGGAGCGGTTCGATGGCCGGCGGCGGAGGAGGGCGGACGCGGGGCGCGCAGGGGAAACGGGTGGGGGCGCAAGGGCAG
GGGGCGTCAGCCGCGACCGCGGGGTACTTCACGGCGGAGCTGGCCGTGCTGTTCCTCTGCCTGACCGCGCTGCTGGTGTT
CCTGCCGCTGGTCCTGCCGCCGCTCCCGCCGCCGCCGTCGCTGCTGCTGCTGGTCCCCGTGGGGCTTATGGCCGTCCTAC
TCGCGCTGGCCTTCGTGCCGTCCGACAGCCGGAGCATCGCCTCGTCGTGCCATTGAAGAGGACGACGCGCGGTAGTAGGA
GTGGAGAAATAATTTTGCTTTTTGTTT-----TTGAATTGACAGTTTTTTTTAACTGCTAACACGATCCATGTAGAAAAA
TCAGAGCTTTATTTAATCACGTGCGACCGTCAAAGAATACATTTTGTGCGTCAAGGATTTATCCAACTATTTTGTAGAAA
CTAGGATTTGT-AAGTGTTAGCCTTGAGTTAGGCCATCTCCAAGGGCAATCCGTAAATTTTGTCCCGCATCTGTATATTC
AACGCTATCCTGTATATACCCGCCAAATAGGCGGGTATTCCTCCTTTAAAAATAATA-----------------------
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----ATAACTGCCAATAAATTTAAATTTAAATGTATTTTGATCCACACAACGCGCCGGATCGCAT-GTCCGATCACCACA
ACAAAAAAAGGCAAGTATGCTTAGTTTTTA----CCCGAATTC--AAAAGAACACGAGTTTGACAGTCTGTGCATTTCTG
CCCTGCTGGACCGGCAATTCCTGTCGTCTGCTCCCTGATCAAGGGGGTCCCGCCGCTGTA---TAGGCAGCCTCCGCCTC
CTCGTCCACAACCGTGTACGCCTCGGCTGCGTCCACGTCGTCCGCCGCCGCCAACTACTGATCTTTCTGTCGCTGCAACA
TCTGGTAGCGGGCGGATTGCACGATGATTCTTGCGTCGGCATCCAAGGAGTCCCCATTCAAGGTCAACATCTTGGCCTCC
TCCACATTGGTGGCGATCATCACCTTCTTTTCCTCGAGCGTAGCCTTTCTCTCTTCGATCATGGTCCTCCTCTCTTCGAG
CTTGAGCTTCCCGTCCGTCGCCTCCATTAATAGTTTGAACCTCTCCGCCTTCTTCTCCCTCTTTTCCTCGAGCGCGGCCT
TCCTGTCTTCGGTCATGGTCATCCTCTCTTCGAGCTTGAGCTTCTTGCCCGCCGCCTCCATCAACAGTTTGAACCTCTCC
GCATTCTTCTCCTACTTGATGTCCGACCGCTTCACGCATGCCTGCTCCTTCGCCAAGAT
>chr1A_1
ATTCGCATGCAATCCCGTCCAATATGCTCCAAATCCAGCCCCAGCCAACTTGCGCTCGCTCG-CTTTACCATAGAGATAT
GCAAACACGCCGCGCACC--TATATATCGTAAGAAAAGCCGCTGCTCTCTGAACCCAGCTGCATGCTAATACGCTGATAC
GATTCTGGGAGTACAGCACGGTCGCCTTGTTTAATCGGCCAGAAATATCCGGTGCATGCACAA--TCCATGGTTTCC---
-AGTCTGATTATCGTTAGCTTTGATCTTGTCATGTCTCTGGCTCTCTGCCACTACCAAGGGGAGTATCAGCGAAGAGATA
CTGCACATCTCGCTTCAGATCTTGCAACGACCGGCTACCAATCCAGCCAGTACATCGAGGCCATTACCGGAAACTAATTA
CTACTCCCTCCGTTCCTAAATATTTTATCTTTCTAGAGATTTGAACAAATGACTACATACGAAGCAAAATGAGTGAATCT
ACACTCTAAAATATATCTATATAAATCCGTATGTGAAATCTCTAAAAAGACAAATATTTCGAAACGGAGAGAGTACTACT
AAAGAACTTCAAATCATCCTTACTGGAGACTGTCAACAGGGCATAATTACACCCCATTAGCTACGCTATCTATCTAGCTA
GCACCCCACCCGATAAGT---AAAGAGACCACGAGACGAGATTGTTGGACGGACGGGATTCTCTCTCGGCAGGGGGGAAG
AACCTGTATAACCTTAACAAGACTGAATCGGCGGCCATGTGAGGCTGTCTCGTCTGCTTGCATCACCGGGGGGGAAAGCA
GCCATCAAAGG-TGACCAGCTGACCCTAGGTGCCAAAGGCGTCCGATACATTGCACCCGGGCCTCCAAATCTCCAGGGTC
TGCCCCCCAACACAGGCCAATTGGCCGACGGGTACACTTGCGCATCCGGGGCAGCCGATCGACCCCGCACTCGCGCA---
---CCCACGCCCACACCACCGGTATCTGTCCTTGGCCATTGTGCCGCCCGAATTCAGAGCCATCTTCGATCACAATCCAT
TGCAACAAGTAGCAAGCCCTTCTGGTTAGTCCCTATATGTACCACGTACAAGTAGTCTGCTGCTGATACAATCAGTGGCA
TACTACTTGCTCTCGGG-TCTCCGCTTGGAATTGGGACGGTCCGCGG----CGATCGAATGTGGACGGAGAGGAGGGCGA
GGAGGAGCGGTTCCATGGCCGGCGGCGGAGGAGGGCGGGCGCGCGGCGCGGAGGGGAAACGGGCGGCGCCGCAGGGGCAG
AGGGCGCCCGCCGCGACCGCGGGGTACTTCACGGCGGAGCTGGCCGCGCTGTTCCTCTGCCTGACCGCGCTGCTGGTGTT
CCTCCCTCTGGTCCTGCCGCCGCTCCCGCCGCCGCCGTCGCTGCTGCTGCTGGTCCCCGTGGGGCTTATGGCCGTCCTGG
TCGCGCTGGCGTTCGTGCCGTCCGACAGCCGGAGCATGGCCTCGTCGTGCCATTGAAGAGGACAGCGCGCGGTAGTAGGA
GTGGAGAAATCATTTTGCTTTCTTGTTTTTGATTGAATTGACAGTTTTG-TTAACTGCTAACACGATCCATGTAGAGAAA
TCAGAGCATTATTTAATCACGTGCGACCGTCAAAGAGTACATTTGGTTCGTCAAGGATTTATCCAGCAATTTTGTCGAAA
CTAGGACTTGTCAAGTGTTAGTGCTGAGTTACGTCATTTCCA--------------------------------------
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>chr1D_1
ATTCGCATGCAATCCCGTCCAATATGCTCCAAATCCAGCCCCAGCCAACTTGCGCTCGCTCGCCTTTACCATAGAGATAT
GCAAACACGCCGCGCGCCTATATATATCGTAAGAAAAGCCGCTGCTCTCTGAACC---------GCTGATACGCTGATAC
GATCCTGGGAGTACAGCACGGTCGCCTTGTTTAATCGGCCAGAAATATCCGGTGCATGCACAAAATCCATGGCTTCC---
-GGTCTGATTATCTTTATCTT-GATCTTGCCATGTCCCTGCCAAGGCCCAACGGGA---GGGAGTATCGGTGAAGAGATA
CTGCACATCTCGCCTGAGATCTTGCAACGACCGGTTATCAATCCAGCCAGTACATCGAGGCCCTTACCGGAAACTAATTA
CT---CCCTCTGTTCGAAAATACTTGTCGGAGAAATGGATGTATTATAATTTTAAATACATTCATTTTTATTCATTTTCT
----------------------------------------------ACGACAAGTAATTTTGGACGAAGAGAA---TACT
AAAGAACTTCAAATTATCCTTACTGAAGACTGTCAACATGGCATAATTACACCCCATTAGA-------------TAGCTA
GCACCCCACCCGATAAGTCTCAAAGAGACTACGAGACGAGATTGTTGGACGGACGGGATTC--TCTCGGCAGGGGGGAGG
AACCTGCATAACCTTAACAACACTAAATCGGCGGCCATGTGAGGCTGTCTCGTCTGCTTGCATCACCGGGAGGAAAAGCA
GCCATCAAAGGATGACCAGCTGACCGTAGGTGCCAAAG-CGCCCGATACATTGCACCCGGGCCTCCAAATCTTCAGGGTC
TGCCCCCCAACACAGGCCAATTGGCCGACGGGTACACTTGCGCATCCGGGGCAGCCGATCGACCCCGCACTCGCGCAGCC
ACGCCCACACCCACGCCACCAGTATCTGTCCTTGGCCATTGTGCCGCCCGAATTCAGAGCCATCTTCGATCACAATCCAT
TGCAACAAGTAGCGAGCCCTTCTGGTTAGTCCCTATATGTACCACGTACAAGTTGTCTGCTGCTGATACAATCAGGCAGC
GGCGGACATACTCGTTGCTCTCCGCTTGGAATTGAGACGGTCCACGCCGGCCGATCGAATGTGGACGGAGAGGAGGGCGA
GGAGGAGCAGTTCCATGGCCGGCGGCGGAGGAGGGCGGGCGCGCGGCGCGGAGGGGAAACGGGCGGCGCCGCAGGGGCAG
AGGGCGCCCGCCGCGACCGCGGGGTACTTCACGGCGGAGCTGGCCGTACTGTTCCTCTGCCTGACCGCGCTGCTGGTGTT
CCTGCCGCTGGTCCTGCCGCCGCTCCCGCCCCCGCCGTCGCTGCTGCTGCTGGTCCCCGTGGGGCTTATGGCCGTCCTAG
TCGCGCTGGCGTTCGTGCCGTCCGACAGCCGGAGCATCGCCTCGTCGTGCCATTGAAGAGGACAGCGCGCGGTAGTAGGA
GTGGAGAAATCATTTTGCTTTTTGTTTTG-------ATCGACAGTTTTG-TTAACTGCTAACACGATCCATGTAGAGAAA
CCAGAGCATTATTTAATCAGGTGCGACCGTCAAAGAACACATTTTGTGCGT-AAGGATTTATCCAACTATTTTGTCGAAA
CTAGGATTTGTCAAGTGTTAGTGCTGAGTTAGGTCATTTCGAC-----AGCCACAAATTTCCTTCTGCATCTGTTCACGC
ATACGGACATAAGAGATCGTCGTCCAACGCTATTTTATACTCTCTCCGTTCCATAATATAAAAGTATTTTTGACACAGCA
TTTGGGTAAAAAATGTTCTTATTCAAAAATGCTCTTATACGTTCTTATTAAAAACGCTCTTATATTATGGCATGGGAGGA
GTATATATCTGTCAATAAATTCAAATTCAAACGTACTTCTATCCACACAGCGTGCCGGATCGGATCGCCTGAT---CACA
AC-AAAAAAGGCAACTATGCTTAGTTTTTACATGCCCGAATCC--AAAAGAATATCAGTCTGGTAGTCCGTGCATTTCTG
CCCTGCCGGACCGGCAATCCCAGTCGTCTGCTCCCTAATCAAGGTGGTGTCGCCGCCGCCGCGTAGGCAGCCTCCGCCTC
CTCGTCCACGTCCGCGTACGCCTCCGCCGCGTCCTCGCCGTCCACCGCCGCCAACTACTGATCTTTCTACCACTGCAACA
TCTAATAGCGGACGGATGGCATGATGGTTCTTGCGTCGACATCCAAAGAGTCCACATTCAAGGTCAACATCTTGGCCTCC
TCCGCATTGGCGGCGATCTTCACCTTCTTTTCATTGAGCATGGCCTTTCTCTCTTCGATCATGGTCCTCCTCTTTTCGAG
CTTGAGT-------------------------------------------------------------------------
-----------------------------------------TTCTTGTCCGTCGCCTCCATCAACAGTTTGAACCTCTCC
-----------------------------------------------------------
>chr5A_1642
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------------CAGTAAATTTAAATTCAAATGTACTCCGATCCACACAGCGCACTGGATCGCAT-GCCCGAT---CACA
ACTAAAAAAAGCAAATATGCTTAGTTTTTTACATTCCCTAATGCAAAAAGAACATCAGTCCAACAGTCCATGCATTTCTG
CCCTACTGGACCGGCAATCCCGGCCG-CTGCTCCCCGATCAAGGAGATGCCATCGCCGCCGCGTAGGCAGCCTCCTCCTC
TGTA------TCCGCGTCCGCCTCCGCCACGTCCTCATAGTCCGCCGCCGCCA---ACTCATCTTTCTGCCGCTGCAACA
TCTGGTAGCGGACAAATTGCATGTTTATTCTTGCATTGGCATCCAAAGAGTTGACATTCAAGGTCAACATCTTGGCGTCC
TCTCCATTGGCGGCGATCTTCACCCTTTCTTCCTCGAGCATGGCCTTCGTGTCTTTGATCATGGTCCTCCTCTCTTCGAG
CTTGAGC-------------------------------------------------------------------------
-----------------------------------------TTCTTGTCTGTTGCCTCCATCAACAGTTTGAACTTCTCC
GCCTTCTTCTCC-----------------------------------------------
>SNPs
-----S--------------------------------------------------------------------------
---------S-------------S----S------------------------------SS-------------------
-------------------------------------SS----------------------S----S----------SSS
S----S--S----------------------S--S---------------------------------------------
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---S----------------------------------------------------------------------------
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-------------------------------------------------S--S-------S--S----S-----------
-----------------S----------------------------------S------------S--------------
-------------------------------S-----------------------------------S-S----------
--------------------------------------------------S------------S----------------
------------------------------------S----------------S--S--S--------------------
-----------------------------------------S------------------S-----SS------S---S-
----S---------------------------S-----------------------------------------S----S
--------------------------------------S-----------------------S---------S-------
S------------S------------------------S----S------S------------S--S-S----S------
S-----S-S-----------------------------------------------------------------------
-------------------------------------------------------------------------------S
----------S----------------------------------------------------SS---------------
----------S-------------------------------------SS--------------------------S---
-------S-------------------------------------------------------------------S----
---------------------SSS---------S---S----SSSSSS-S--SS------SS-S-S--------SS-SS-
-SSSSS-SSSSSS-S--SSS--S-S--SSSSSSSS---S-SSS--SSSSSSSSS-SS-----------------------
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-------S---S---------------S-------S--S----------S-----------------S-----SSS----
--S-----------S---------------------------------------SS---S--------S-----------
------------------S--S----------------------S---S-------S-SS--------------------
---------SS---S---------S--S------S----------------------------------S----------
-----------S---------S------------------------S------S--------------------------
---S------S-------S--------------------S-S--------------------------------------
-------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------S---S----------------------------
--S---------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_658
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------------------------------------------------------------------------------TA
GCACCCCACCCGATAAGA--------------------------------------------------------------
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>reverse_2455
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------------------------------------------------------CTCCCTCTTTTCCTCGAGCG------
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