>input_sequence_83950
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-ATGGACACCGAGCCAATGAGGTGCACATGCTGCGACTTCAAAGAGGAGTGCACCCAGGAGTACATAAAGAGCGTCAAGG
CCAACTTTGGAGGGGAATGGCTCTGCGGCTTATGCTCGGAGGCCGTAGGGGATGAACTCAGTAGAGAAGGAAGGGGTCAG
GATGGCGTCAAAGAGGCTATCAAGGTGCATATGGCATTCTGCAGGATGGCTCTGTCAAGCCCAGCTGTACGAGTCGCCGA
TGGCATGAGGGAGATGCTCAGAAGGAGCTCAAGAGATAAGGGGAGGCCTTCAACATCAGCAAAGTCATGCTCACTCTAA-
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>chr1A_1_TraesCS1A01G327600
CACAGTCAGCAATTTTGTGACCATTCCAAATTACTTCACCCCTACACAAGATGACTCACACGAGAACAATAGTGCATGGC
TCTCAGTCTCAGGGACCTTCTGGGCCGCGCTACACACCAATCTACCATGTCTACCTTGAACAATCATTCGGTACATCATA
TCATCCATCCACCGTCGTAAAACAGTTCACCGGTCGCC-------------------ACACGACCGCGGGTTCCGCGAAG
GTATTACGTGCATCCACCGGTAAAGTTTAACTGCTTCTGGCAAGGCTGAGATGTGACAGTGT--CCATCTTAGCCTCCAA
GGCTTCAACAAAGCAGCAGCAGCTTGGTGGAGCTTCCCCTTATTCTCAACTTAACTCGCCACTAGTTATGAGCCACCACC
TGCGCAGCAAAAGTATAAGGTTACAATGG-----AGTTGAGCAAAGTAAAATTTCAGCTACTGGGGATCCACATGAGCAC
ATACGGAAGTAAGGCTCTAGGG-----------AACATGCAACGACCGTTAAGATGTACTACCTCTTTGTTCCTAAATAT
AAGATGTTTTGGCAGTTCAATGTAGCGCGAAAACCATAGAAGTACAAGGGGGCACCCATGGACTGCGCCAGCTGGGTTAC
TGTCATAGGATCATAGCTAATAAGACCAACAACATCT----TCTCCCACCTGTACCTTCAACGCAGCTGCAGCCATGTGA
ACTAGGTCTCTCCACATCGTCATTTTTACCAAGTAAAGTGTCAGCCCATCAATGCAAATACATTATGCTCTCACAACCTA
GTGCACTGCTCAAGATGCTATGGGCCAGGGCAAATCCTGGAATTTCAATAATCGATCAAGCTAACGCAGACAAGCCAAAG
GAAAAAACAAGCCCTTCGAAATTTTCCATACAAGTAGGCTAGCAACCTAGTCCCGAGGTCCCCTCGTCGCTCCCTTCTGT
TCGTCCACTCCCTCCCTCTTTCTCCAGCTCTGCTGCTACGCTCCTCCTGTTTTTCGCATATCGTCTCCATCAACACTGAA
GATGGACACCGAGCCAATGAGGTGCACATGCTGCGACTTCAAAGAGGAGTGCACCCAGGAGTACATAAAGAGCGTCAAGG
CCAACTTTGGAGGGGAATGGCTCTGCGGCTTATGCTCGGAGGCCGTAGGGGATGAACTCAGTAGAGAAGGAAGGGGTCAG
GATGGCGTCAAAGAGGCTATCAAGGTGCATATGGCATTCTGCAGGATGGCTCTGTCAAGCCCAGCTGTACGAGTCGCCGA
TGGCATGAGGGAGATGCTCAGAAGGAGCTCAAGAGATAAGGGGAGGCCTTCAACATCAGCAAAGTCATGCTCACTCTAAC
TAGGTGAGAAGCTTTTCGATGCAAGGAACATCCCAATGATGCTCTGAGTCATCTTTGGACATTA--CTGATGTGAGTCTG
CCAATCTACTGAAGAGTTGTATTTGTAGTAATTTAAGTTTGATATTTCTAGGCAACATGTCAATTGTAAATATGATTCAA
TCTTATGATATGAAGTTTTAATATCGTTATGTTTCCGAATGTATGCAAGCTTCATGCACTGGATATATATGAAACTGGTT
TTCTGCCTTCATTTTATTTTTCATGAGGAGAATATAACTTCCTCTACAATTGTTTGTCTTCGATTCTAAAATATGGTC-G
GTTCTCATTCACAATTGATGCAGTTGATATATAGTGAAAACA-AACTCTCATAATGATAATGTAGAGTGAGTGAACAGTT
ACTTTGCCAGTTCAACTCTGCAATTTCTGCTCAATGTGTTCCTTTGTTAC--CATATCGGCCAGAAAATTTGGAATAAGA
TTTGACCTAGCTGGATCTCACTGTGCTACTCTTCATAAATACCTAGAGCATCCCAGAGAAAACTGTCTACTGCCCACC-A
ACATGTACAAACAGATTAAAACATGAATAAAAGGGAAAATGCCTTAGGATTCAAGGTTTGGAATACTGTAAAGCCAGAAT
TACCACTAGTGTACCAACATCATAAAGTTCCTCGCGATGAAGATACAACTCACATTATGAAGTCAGTTTGGCCATTTATT
GGGATGTGTTGTTTCAGAATGTTGCTTACTGGGAAAGTCTACAGCATAGGTCAACAGCGTAGTTTTCTTTTTTTTTTTTT
TTTTGAGAAAACGCAGGGGACCCATGCGTTTCATTCCATTGAAAAGAGAGAGTTTGTAATTACAATCCTCCTAGGAGGCG
GTTTCAGATAGAAAGTAGATGCTAGTGCACATCCCATGAGGTGGGCAGCACGACTCTAAGGCCAGCAGCGCCAGCAGTGG
CCAGAGCCTGGCTTCGGCCTTGATCCTACTCACTAATACTGCTCTA
>chr1D_6
-----TCAGCAATTTTGTGACCATTCCAAATTACCTCCCGGCTACACAAGATGACTCACAAGAGAACAATAGTGCATGAC
TCTCAGTCTCAGGGACCTTCCGTGCCGCGCTACACGCCCTTCTACCATGTCTACCTTGAACAATCATTCGGTACATCATA
TCATCCATCCACTGTCGTAAAACAGTTCATCGGTCGCCGTTTGCGACGTGGTAAAACACGCGACCGCGCGTC-----AAG
GCATTACGTGCATCCACCGCTAAA-TTTAACTGCTTCTGGCAAGACGGAGATGTGACAGAGTATCCATCTTAGCCTCCAA
GGCTTCAACAAAGCAGCAGCAGCTTGGTAGAGCTTCCCCTTATTCTCAACTTAACTCGCCACTAGTTATGAGCCACCACC
TGCGCAGCAAAAGTATAAGGTTACAATGGACTGGAGTTGAGGAGAATAAAATTTCGGCTACT-GGGATCCACATGAGCAC
ATACGTAAGTAAGGCTCTAGCCATAACATAAGAAACATGCAACGACCGTTAAGATGTACTACCTCT--GTTCCTAAATGT
AAGACGTTTTTGCAGTTCAATGTAGCGCGAAAACCATAGAAGTACAAGGGGGCACCCATGGACAGGGCCAGCTGGGTTAC
CGTCATAGGATCATAGCTAATAAGACCAACAACATCT----TCTCCCACCTGTACCTTCAACACAGCTGCAGCCATGTGA
ACTAGGTCTCTCCACATCGTCATTTTTACCAAGTAAAGTGTCAGCCCATCAATGCAAATACATTATGCTCTCACAACCTA
GTGCACTGCTCAAGATGCTATGGGCCAGGGCAAATCCTGGAATTTCAATAATCGATCAAGCTAACCCAGACAAGCCAAAG
GAAAAAACAAGCCCTTTAAAATTTTCCATACAAGTAGGCTAGCAACCTAGTCCCGAGGTCCCCTTATCGCTCCCTTCTGT
TCGTCCACTCCCTCCCTCTTTCTCCAGCTCTGCTGCTACGCTCCTCCTGTTTTTCGCATATCGTCTCCATCAACGCTGAA
GATGGACACTGAGCCAATGAGGTGCGCATGCTGCGACTTCAAAGAGGAGTGCACCCAGGAGTACATAAAGAGCGTCAAGG
CCAACTTTGGAGGGGAATGGCTCTGCGGCTTATGCTCGGAGGCCGTAGGGGATGAACTCAGTAGAGAGGGAAGGGGCCAG
GATGGCGTCAAAGAGGCTATCAAGGCGCATATGGCATTCTGCAGGATGGCTCTGTCAAGCCCAGCTGTACGAGTCGCCGA
TGGCATGAGGGAGATGCTCAGAAGGAGCTCAAGAGATAAGGGGAGGCCTTCAACATCAGCAAAGTCATGCTCTCTCTAAC
TAGGTGAGAAGCTTTTCGATGTAAGGAACATCCCAATGATGCTCTGAGTCATCTTTGGACATTATAATGATGTGAGTCTG
CCAATCTACTGAAGAGTTATATTTGTAGTAATTTAAGTTTGATATTCCTAGGCAACATGTCAATTGTAAATATGAT-CAA
TCTTATGATATGAGGTTTCAATATCACTATGTTTCCGAATGTATGCAAGCTTCGTTCACTGGAGATATATGAAACTGGTT
TTCTGCCTTCATGTTATTTTTCATGAGAATC---TAACTTCATCTACATTTGTTTGTCTTTGATTCTAAAATATGGCTTT
GTTATCATTCTCAACTGATGCAGTTGATATATAGTGAAAAACTAACTCTCAAAATGATAATGTAGAGTGAGTGAACAGTT
ACTTTGCCAGTTCAACTCTGCAATTTCTGCTCAATGTGTTCCTTTGTTAC--CATATCAGCCAGAAAATTTGGAATAAGA
TTTGACCTAGCTGGATCTCACTGTGCTACTCTTCATAAATACCTAGAGCATTCCAGAGAAAACTGTCTACTGTCCACC-A
ACATGTACAAACAGATTAAAACATGAATAAAAGGGAAAATGCCTTAGGATTCAAGGTTTGGAATACTGTAAAGCCAGAAC
TACCACTAGTGTACCAACATCATAAAGTTCCTCGCGATGAAGATACAACTCACATTAGT-----------TCCATTTATT
GGGATGTGTTGTTTCAGAATGTTGTTTACTGGGAAAGTCTACAGCATAGGTCAACAGCGTAGTT----------------
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>chr1B_609
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-----TAGGATCATAGCTAACAAGACCAACCAACAACATCCTCTCCCACATGTACCTTCAACACAGCAGCAGCCATGTGA
CGAAGGTTTCCCCGCATCGCCAATTTTACCTAGTAAAGTGTCAGCAAACAATGCATATCACAC-ATGCTCTCGCAACCTA
GTGCACTGCTCAAGATGCTATGGGCCAGGGAAAATCCCGGAATTTCAATAATCGATCAAGCTAGCCCAGACAAGCCAAAG
GAAAAAACAAGCCCTTCAAATATTTCCATACAAGTAGGCTAGCAGCCTAGTCCCGAGGTCCTTAG--CGCTCCATTCTGT
TCGTCCACTCCCTCCCTCTTTCTCCAGCTCTGCTGCTACGCTCCTCCTGTTTTTCGCATATCGTCTCCATCAACACTCAA
GATGGACACTGAGCCAATGAGGTGCGCATGCTGCGACTTCAAAGAGGAGTGCACCCAGGAGTACATAAAGAGCGTCAAGG
CCAACTTTGGAGGGGAATGGCTCTGCGGCTTATGCTCGGAGGCCGTAGGGGATGAACTCAGTAGAGAGGGAAGGGGCCAG
GATGGCGTCAAAGAGGCTATCAAGGCGCATATGGCATTCTGCAGGATGGCTCTGTCAAGCCCAGCTGTACGAGTCGCCGA
TGGCATGAGGGAGATGCTCAGAAGGAGCTCAAGAGATAAGGGGACGACTTCAACATCAGCAAAGTCATCCTCACTCTAAC
TAGGTGAGAAGCTTTTCGAAGTAAGGAACATCGCAATGATGCTCTGGGTCATCTTTGGACATTATACTGATGTGAGTCTG
CCAATCTACTGAAGAGTTATATTTGTAGTAATTTAAGTTTGATATTCCTAGGCAACATGTCAATTGTAAATATGAT-CGA
TCTTATGATATGAGGTCTCAATATCATTATGTTTCCGAATGTATGCAAGCTTCATTCACTGGAGATATATGAAACTGGTT
TTCTGCCTTCATGTTATTTTTCATGAG---AATATAACTACATCTACATTTGTTTGTCTTTGGTTCTAAAATATGGCTTG
GTTATCATTCTCAACTGATGCAGTTGATATATAGTGAAAAACTAACTCTCACAATGATAATGTAGAGTGAGTGAACAGTT
ATTTTGCCAGTTCGACTCTGCAATTTCTGCTCAATGTGTTCCAGAGAAAACACATATCGGCCAGAAATTTTGGAATAAAA
TTTGACCTAGCTGGATCTCACTGTGCTACTCTTCATAAATACCTAGAGCATTCCAGAGAAAACTGTCTACTGCCCACCAA
ACATGTACAAACAGATTAAAACATGAATAAAAGGGAAAATGCCTTAGGATTCAAGGTTTGGAATACTGTAAAGCCAGAAT
TACCACTAGTGTACCAACATCATAAAGTTCCT-GCGATGAAGATACAACTCACATTATGAAGTCAGTTTGTCCATTTATT
GGGATGTGTTGTTTCAGAATGTTGTTTACTGGGAAAGTCTACAGCATAGGTCAACAGCGTAGTT----------------
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>SNPs
SSSSS-----------------------------S--S-SS-------------------S-----------------S-
--------------------S-S------------S--SS----------------------------------------
------------S----------------S-----------------------------S--------S--SSSSSS---
-S-----------------S----S-------------------S-S------------S--------------------
----------------------------S---------------------------------------------------
-----------------------------------------S-S-S---------S------S-----------------
-----S--------------SS--------------------------------------------SS----------S-
----S-----S----------------------------------------------------S-S--------------
S-------------------------------------------------------------S-----------------
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-----------------S----------------------------------------------SS--------------
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---------S---------------S------------------------------------------------------
-------------------------------------------------------------------S--------S---
-------------------------S------------------------------------------------------
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---------------------S----------------------------------------------------------
------------------S---------------------------S-----------------------------S---
-------------S----S------S-----------------------------S-------S----------------
------------S--------------S-S-----------S------S-----------S---------------SS--
---S------S---S-------------------------SS---------S----------------------------
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---------------------------------------------------S----------------------------
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----------------------------------------------------------------------S---------
------------------------S---------------------------------------SSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_265
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-----ACGTGCATCCACCGGTAAAG-------------------------------------------------------
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>reverse_2264
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-----------------------AGTGCACATCCCATGAGGTG-------------------------------------
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