>input_sequence_83918
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-------------------------------------------------------------------ATGGGTTGTGTGC
GCAGTGCACTTGCCCGGTCAGGAGGATGTGTGTGCGTAATGAGAAGTAAACGTCGCAGACAGGTTGGCGCTGTTGCGCGT
CCTGCCTGTGTGGCGGCTGTGCATGCACTGCTCAAGCTGGGAGCTGATGTGGAGGCTGGAGCTGCTACGGGG-----GAT
GTTGGCTGCGTGCTGCTGAAGCTGGGAGGAG-----------------------ACGGGGAGGTCCCGGACCCGACCCCT
CTGCGCAGCGGCGCTAATATGGTTGTGCTTGATGGGCAGGCAGATGTACCGGCGCCTGGCAGCGAGGGCTGCTTCGTGCC
GCCTGCTCGGGCTTGA----------------------------------------------------------------
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----------------------------------------------------------
>chr7B_1_TraesCS7B01G189700
TTTTCCGTCCTCCCTCCCACCTCAACCTTCACTTGTTTTTTTTCGTCGGTTTTTTTTCGTCTGGTTTTTTCTGACCTCCC
ACGCATTATTTTCTCCAGTTCTTTTGCCCCGCATCAATGGTCTTTTTCTGATACAGATACTACACGCACAACATGCAATG
GCACCCTGCTCGATCTGGATCTCGGCGGCGGCGGCGGCTCCTCCCTCTAACCGCGCACCCTGCTCGATCTAGATCTCGGC
GA---------------------------CGCTACCACTATGGCGATTCCATTCTTGAGGCGTAGTGGAGGTGACGGAAG
CCCGACGGCATCGGCTTGCCGGAGATGAAGAAGACGGCCCAGTGCTGCAGTACTCGGGAGGAGGAATTAGCGAGGGAGGT
GGCTCCACTTGGATGTCGCGGACCAACCACTGGACGGAGTCGAAGCGGGACGATGTGGTTCGGTGGTCAACGCGGGCCAG
GAGGCGGCCATGGCGATCCGGCCGCGGCGGTGTTTCTCGATCCGGAGAGGAGGCGTCCTCCGATCAGCTCTGCCGTCTCC
CCCGCCGGCGTCGCTCTCCACTCACCTTCTTTCCTTCGCCGCCACACCTCTCCCTATCTGGATCTGAGCCAACACCGGTT
GTTCGTCACCCTCCCTCCCATCTTACCAACCGCTTAACACAATCCTGGGTGTAGTGGTCGCGGTGGTTCAAATCCTGCAC
GGCGGCGGTGCGGTTCCCTGGCTGCACGGCGAGCAGGAACAAGCAGCGGCGACTTACGGGCTTTGGCGGCGCGAGGACAC
CCGCGGGACCGGAGATGGCACAGTGGGCGTCCCGAACACAAGGAGTGTCGTGCCCGGCGTTCGTGATTTGGCAGACTATG
GAATCGTGCGCACCGTCGTCGATTGGGAGCGCGAACCAACGGATTTTCAGCTCAGTCCACTGATTTGGAGCATTCGATTA
TGTCCAAGAAACACTTTGTTGGTATGGATGTATTCATGAATGCAGAGATTTCAGGCAGCCGTGGAGGATGGGTTGTGTGC
GCAGTGCACTTGCCCGGTCAGGAGGATGTGTGTGCGTAATGAGAAGTAAACGTCGCAGACAGGTTGGCGCTGTTGCGCGT
CCTGCCTGTGTGGCGGCTGTGCATGCACTGCTCAAGCTGGGAGCTGATGTGGAGGCTGGAGCTGCTACGGGG-----GAT
GTTGGCTGCGTGCTGCTGAAGCTGGGAGGAG-----------------------ACGGGGAGGTCCCGGACCCGACCCCT
CTGCGCAGCGGCGCTAATATGGTTGTGCTTGATGGGCAGGCAGATGTACCGGCGCCTGGCAGCGAGGGCTGCTTCGTGCC
GCCTGCTCGGGCTTGATCTCTTCATCAATCCTTTCCCCGGTGAGCTTTCATTCCTTCTTGGTTTTGGTTGTGCGTGGCTT
TGATTTGTGGAAATCCAATCAGATTAATTTCAAATATCTTGCGCTGCTTGCAGCAGGACAAGGTCTGTATGGAACTCGAT
TAGTATGAAATTTGAACATTCAAAGGTTATTGTGATATATATAGTTGCACGTACGTTAATGACTTTTTGGGTGTTAGAAA
CTTGGAATCCGACCGTCCTAAATGAGTAGATGCAGTGCGAATCACCGCCCGGAGCTGAATTTAGTGATTTAGGCTATGTT
ATCTGATTTATGTGTCGGTGGCTTTGGGTAGACTGGTTTGAATCTGAATTCAGTGGTTGATGAGAGGAGCAATGAAGCTA
AATCATAGAATAAAAAGCAAAGGAGGTTATGAGACAGTATATATTTTTCATTCAACACCCACTTCCAACATTGCAAGGGT
AAAGCTAGAAACTCCAATAGGAATGTTTAGTCATTGACGTTTTCCCTGATACATGAATGCCCGCATGCTCTCTAAAAAGA
-AACTCTTCTCGGATTACCTG-TTGTATTTTGTTCCCTCTCTAATGAGGCATTAAATCAGTCGTGTTGGTCTTATCGGTG
TATCATATAGATATAATTATGTTCTTCAGCATTCATTCGGGTTAAGGCTGGACAATGAAAAACTTCTCTCTATAGACTTA
TGTTATTTGTCGGTGATGAGACACATAAGTACTAATTAATATATTTCATGCGAGAAGGTATAATTTGTGGCTTTAATTTT
CTCTTTATGTTTATGTTTTCTCTCTTTTGTTGATCCCGATGCATTTTGTACTGATATGTTGTGGTAGCTGATCATGAGAG
GAAGGGTGAAAATTTCACTTCAAAGTGATGCTTACTGAGAAGAAGAGTGAGGGGTAATGACAAAAATGGCGGAGAAAAAG
ACTGCTCTATTTGGTCATGAAAGCATATTTTCTCACTAGATAAGCTATTTTTGGTAGC
>chr2A_89
TTTTCGC-------------------------------------------------------------------------
--------------CCGGTTCTTTTCCCCTGCAGCACCGGTCTTTTTCCGATAGAGATACTACACGCACGACATGCAACG
CCACCCCGCTCGATCTAGATCTCGGCGGCGGCGGCGGCTCCTCCCTCTACTCGCGCACGAACGGATCCCCTAGAGCCCTC
CCCACCTCCTCCCTTCTCAGCGCCCATATCGCCACCCCTATGGCGATTTGAGC-------CGTAGTGGAGGTGACGGAAG
TCCGACGGCGTCGGCTTGCCAGAGAT------------------------------------------------------
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--------------------------------------------------------------------------GAAGAG
GACAACCCAGTGCTGCGGTACTTGGGAGGAGGAATTGGCGACGGAGGTGGCTCCACCTGGATGTCGCCGACCGCCCACCG
GAAGGAATCGAAGCGGGAC--GATGTGGTTCAGTGGCC-----AACGCAGGGCAGGAGGCGGCCATGGCGTTCCCGGCCA
TGGCGG------------TCTTTCTCGATCCGAAGAGGAGACGTC-----------------------------------
------------CTCCAATCAGTT--------------------------------------------------------
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------------CCGCCCTCTCCCC-------------------------------------------------------
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---------------------------------------------------------TGCCGGCTTCGCCCTCCACTCAC
CTTCTTTCCTT---------------------------------------------------------------------
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>chr3B_1148
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------------------------------------------------------GCCGGAGCTGCTACGGGCGGGGAGAT
GCTAGCGGCGTGCTGTTGGAGCTGGGAGGAG-----------------------ACGCGGAGGCCCCGGACCAGATA-CT
CTGTGCAGCGT-GCTTAGATGGTTGTGCATGATGGGGAGGCGGAAGGACCGGCGCCTGCCGGCCAGGGCAGCTTCGTGCC
GCGGGCTCGGGTGCGATCTCTTCCTCAATCCTTTCCCCGGTGAGCTTTCATTGCTTCTTAGTTTTGGTTGTGCGTGGCTG
AGATTTGTGGAACTCCAATCAGATTAATTTCAAATTTATTGCGTTGCTTGCAGCATGACAAGGTCTGCATGGAACTCGAT
TAGTATGAAATTTGAACATTTGTAGGTTGTTGTGATATATAGTTGC------ACGTTAATGATTTTTTGGTTGTTAGAAA
CTTGGAATCGGACCGCCCTGAATGAGTACATGCAGTTTGAATCACCACCCCGAGTTGAACATAGTGATTTAGGCTATGTT
GCCTGATTTATGTGTTGGTGGCTTTGGGTAGGCTGGTTTGAATCTGAATTCAATAGCTG------------ATGAAGGTA
AATCCTTGAACAAAACATGAAGGAGTTTATGAGACAGTATATATTTTTCATTCAACACCCACTTCCAACATTGTAAGAGT
AAAGCTAGAAATCTTGATAGGGATGTTTAGACATTGATGTTTTCCCTAATATGTCAATGCCCGCATGCCTCTCTAAAAAA
-TACTCTTCTCAGATTACTTGTTTGTGTTTTGTTCCCTCGCTACTGAGG-------------------------------
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>chr6A_1148
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------------------------------------------------------GCCGGAGCTGCTACGGGCGGGGAGAT
GCTAGCGGCGTGCTGTTGGAGCTGGGAGGAG-----------------------ACGCGGAGGCCCCGGACCCGATA-CT
CTGTGCAGCGT-GCTTAGATGGTTGTGCATGATGGGGAGGCGGAAAGACCGGTGCCTGCCGGCCAGGGCAGCTTCGTGCC
GCGGGCTCGGGTGCGATCTCTTCCTCAGTCCTTTTCCCGATGAGCTTTCATTGCTTCTTAGTTTTGGTTGTGCGTGGCTG
AGATTTGTGGAACTCCAATCAGATTAATTTCAAATTTATTGCGTTGCTTGCAGCATGACAAGGTCTGCATGGAACTCGAT
TAATATGAAATTTGAACATTTGTAGGTTGTTGTGATATATAGTTGC------ACGTTAATGATTTTTTGGTTGTTAGAAA
CTTGGAATCGGACCGCCCTGAATGAGTACATGCAGTTTGAATCACCACCCCGAGTTGAACATAGTGATTTAGGCTATGTT
GCCTGATTTATGTGTTGGTGGCTTTGGGTAGGCTGGTTTGAATCTGAATTCAATAGCTG------------ATGAAGGTA
AATCCTTGAACAAAACATGAAGGAGTTTATGAGACAGTATATATTTTTCATTCAACACCCACTTCCAACATTGTAAGAGT
AAAGCTAGAAATCTTGATAGGAATGTTTAGACATTGATGTTTTCCCTAATATGTCAATGCCCGCATGCCTCCCTAAAAAA
-TACTCTTCTCAGATTACTTGTTTGTGTTTTGTTCCCTCGCTACTGAGG-------------------------------
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>chr1A_1148
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------------------------------------------------------GCCGGAGCTGCTACT-----GGAGAT
ACTAGCGGCACGCTGTTGGAGCTAGGAGGAG-----------------------ACGCGGAGGCCCCGGAGCCGACTCCT
CTGTGCAGCTT-GCTTACATGGTTGTGCATGATGGGGAGGCGGAAGGAACGGCACCTGGCGGCCAGGGCTGCTTCGTGTC
ACGGGCTCGGGCTCGATCTCTTCCTCAATCGTTTCCCCGGTGAGTTTTCATTGCTTCTTAGTTTTGGTTGTGCGTGGCTG
AGATTTGTGGAACTCCAAACATATTAATTTCAAATTTATTGCGTTACTTGTAGCATGCCAAGGTTTGCATGGAACCCTAC
TAATATGAAATTTGAACATTTGCAGGTTGTTGTGATATATAGTTGC------ACGTTAATGATTTTTTGGTGGTTAGAAA
CTTGGAATCCAACCGTCCTAAATGAGTAGATGCAGTTCGAATCATCACCCCGAGTTGAATATAGTGATTTAGGCTATGTT
GCCTGATTTATGTGTTGGTGGCTTTGGGTAGGTTGGTTTGAATCTAAATTCAGTAGCTG------------ATGAAGGTA
AATCCTTGAACAAAAAGTGAAGAAGTTTATGAGACAGTATATATATTTCATTCAACACCCACTTCCAACATTCCAAGAGT
AAAGCTAGCAATCCTGATAGGAATGTTTAGTCATTGACGTTTTCC-TGATATGTCAATGTCCGCATGCCTCTCTAAAAAA
-TACTCTTCTCAGATTACTTGTTTGTGTTTTGTTCCCTCAGTACTGAGG-------------------------------
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>chr7A_1151
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---------------------------------------------------------GGAGCTGCTACGGGCGGGGAGAT
GCTAGCGGCGTGCTGTTGGAGCTGGGAGGAG-----------------------ACGCGGAGGCCCCGGACCCGATA-CT
CTGTGCAGCGT-GCTTAGATGGTTGTGCATGATGGGGAGGCGGAAGGACCGGCGCCTGCCGGCCAGGGCAGCTTCGTGCC
GCGGGCTCGGGTGCGATCTCTTCCTCAATCCTTTCCCCGGTGAGCTTTCATTGCTTCTTAGTTTTGGTTGTGCGTGGCTG
AGATTTCTGGAACTCCAATCAGATTAATTTCAAATTTATTGCGTTGCTTGCAGCATGACAAGGTCTGCATGGAACTCGAT
TAGTATGAAATTTGAACATTTGTAGGTTGTTGTGATATATAGTTGC------ACGTTAATGATTTTTTGGTTGTTAGAAA
CTTGGAATCGGACCGCCCTGAATGAGTACATGCAGTTTGAATCACCACCCCGAGTTGAACATAGTGATTTAGGATATGTT
GCCTGATTTATGTGTTGGTGGCTTTGGGTAGGCTGGTTTGAATCTGAATTCAATAGCTG------------ATGAAGGTA
AATCCTTGAACAAAACGTGAAGGAGTTTATGAGACAGTATATATTTTTCATTCAACACCCACTTCCAACATTGTAAGAGT
AAAGCTAGAAATCTTGATAGGAATGTTTAGACATTGACGTTTTCCCTGATATGTCAATGCCCGCATGCCTCTCTAAAAAA
-TACTCTTCTCAGATTACTTGTTTGTGTTTTGTTCCCTCGCTACTGAGG-------------------------------
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>chr2A_1152
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----------------------------------------------------------GAGCTGCTACT-----GGAGAT
ACTAGCGGCACCCTGTTGGAGCTGGGAGGAG-----------------------ATGTGGAGGCCCCGGAGCCGACTCCT
CTGTGCAGCTT-GCTTACATGATTGTGCATGATGGGGAGGCGGAAGGAACGGCACCTGGCGGCCAGGGCTGCTTCGTGTC
ACGGGCTCGGGCTCGATCTCTTCCTCAATCGTTTCCCCGGTGAGTTTTCATTGCTTCTTAGTTTTGGTTGTGCGTGGCTG
AGATTTGTGGAACTCCAAACATATTAATTTCAAATTTATTGCGTTACTTGTAGCATGCCAAGGTTTGCATGGAACCCGAC
TAATATGAAATTTGAACATTTGCAGGTTGTTGTGATATATAGTTGC------ACATTAATGATTTTTTGGTGATTAGAAA
CTTGGAATCCAACCGTCCTGAATGAGTAGATGCAGTTCGAATCATCACCCCGAGTTGAATATAGTGATTTAGGCTATGTT
GCATGATTTATGTGTTGGTGGCTTTGGGTAGGTTGGTTTGAATCTGAATTCAGTAGCTG------------ATGAAGGTA
AATCCTTGAACAAAAAGTGAAGAAGTTTATGAGACAGTATATATATTTCATTCAACACCCATTTCCAACATTCCAAGAGT
AAAGCTAGCAATCCTGATAGGAATGTTTAGTCATTGACGTTTTCCCTGATATGTCAATGTCCGCATGCCTCTCTAAAAAA
-TACTCTGCTC-GATTACTTGTTTGTGTTTTGTTCCCTCAGTACTGAGG-------------------------------
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>chr7B_1200
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------------------------------------------------------ACGCGGAGGGCCCGTACCCAACTTTT
CTGTGCAGCTT-GCTTACATGGTTGTGCATGATGGGGAGGCAGAAGGACTGGCGCCTGCCGGCCAGGGCTGCTTCGTGTC
GCGGGCTCGGGCTCGATCTCTTCCTCAATCGTTTCCCCGGTGAGCTTTCATTGCTTCTTAGTTTTGGTTGTGCGTGGCTG
AGATTTATGGAACTCCAATCAGATTAATTTCAAATTTATTGCGTTGCTTGTGGCATGACAAGGTTTGCATGGAACCCGAC
TAATATGAAATTTGAACATTTGCAGGTTGTTGTGATATATAGTTGC------ACGTTAATGATTTTTTGATGGTTAGAAA
CTTGGAATCCAACCGTCCTGAGTGAGTAGATGCAGTTCTAATCACCACCCAGAGTTGAATATAGTGATTTAGGCTATGTT
ACCTGATTCATGTGTCGGTGGCTTTGGGTAGGCTGGTTTGAATCTGAATTCATTAGCTG------------ATGAAGGTA
AATCCTTGAACAAAAAGTGAAGAAGTTTATGAGACAGTATATATTTTTCATTCAACACCCACTTCCAACATTCCAAGAGT
AAAGCTAGCAAACCTGATAGGAATGTTTAGTCATTGACGTTTTCCCTGATATGTCAATGCCCGCATGCCTCTAAAAA-GA
-TACTCTTCTCAGATTACCTGTTTGTGTTTTGTTCCCTCGCTACTAAGG-------------------------------
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>chr1B_1200
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------------------------------------------------------ACGCGGAGGGCCCGGACCCGACTCCT
CTGTGCAGCTT-GCTTACATGGTTGTGCATGATGGGGAGGCAGAAGGACTGGCGCCTGCCGGCCAGGGCTGCTTCGTGTC
GCGGGCTCGGGCTCGATCTCTTCCTTAATCGTTTCCCCGGTGAGCTTTCATTGCTTCTTAGTTTTGGTTGTGCGTGGCTG
AGATTTATGGAACTCCAATCAGATTAATTTCAAATTTATTGCGTTGCTTGTGGCATGACAAGGTTTGCATGGAACCCAAC
TAATATGAAATTTGAACATTTGCAGGTTGTTGTGATATATAGTTGC------ACGCTAATGATTTTTTGGTGGTTAGAAA
CTTGGAATCCAACCGTCCTGAGTGAGTAGATGCAGTTCTAATCACCACCCCGAGTTGAATATAGTGATTTAGGCTATGTT
GCCTGATTCATGTGTCAGTGGCTTTGGATAGGCTGGTTTGAATCTGAATTCATTAGCTG------------ATGAAGGTA
AATCCTTGAACAAAAAGTGAAGAAGTTTATGAGACAGTATATATTTTTCATTCAACACCCACTTCCAACATTCCAAGAGT
AAAGCTAGCAAACCTGATAGGAATGTTTAGTCATTGACGTTTTCCCTGATATGTCAATGCCCGCATGCCTCTCAAAAAAA
ATACTTTTCTCAGATTACCTGTTTGTGTTTTGTTCCCTCGCTACTAAGG-------------------------------
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>SNPs
-----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSS--S--------S---S---S--SS----------S----S---------------S--------S-
S-----S---------S--------------------------------SS-------SSSSSSSSSS-SSSSSSS-SS-
SS------------------------------S---S-----------SS-SSSSSSSSS--------------------
S--------S----------S-----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--S--------------S--------
-S-S--S-----------S--------------------------------------S------------------S---
---S------SS---S-S--------------------------S-S-------------S--S----------------
--SS---------S---------S----------------------------S------S-------------------S
S-----------S----------------------S-S-----S-----------S-----------S------------
--------------------SSS-----S------------SSSSSSSSSSS----------S-------S---------
------------------------------------S---------S---S---S-----S-------------------
-S-----------------------------S----------------------S-S--SSSSSSSSSSSS------S--
----S-S---S------SS------S---------------------------------------------------S--
-----------SS-SS-----------------------------------SS-S-------------S-S-S-------
-S---------S--------------S------------S---S-----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_649
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---------------------------------------------------------------------CAACACCGGTT
GTTCGTCAC-----------------------------------------------------------------------
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>reverse_2307
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------------------------------------------------------------------TGGCGGAGAAAAAG
ACTGCT----------------------------------------------------
