>input_sequence_83901
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--------------------ATGCCTCCTGGTAGCGAGGACGAGAGTGCGCCCC---TGAGCGCCACCGACCGCATCGGT
GCACTCCCCGACCATATTCTCCACCACCTGCTCTCTTACCTCCCAGCGCAGGCAGCCGCGCGGACGTGCGTGCTTGCCTG
GCGCTGGCGCCACCTTTGGAAGTCCACTACAGGCCTGCGCATCGTCGGCCTTGACGATGAGGAGACTGTCCAAGTTCAAG
ACCTCCGGAAGTTCATGGATCATTGTCACGCCTTCCTCCAATTCGGCGGACAGCGAGTCGCCGGCTCCAGACTCCCTGAC
AAATGGACCGGCGAACGACGATGA--------------------------------------------------------
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>chr6A_1_TraesCS6A01G070300
TCTCATCAGACCGAATCCGAGAGCCCATTGGCTGACACAATGGATTCCGCTAGATCAAATCTGACCTTAGTCGGGCGCAC
TTCTCACACGAGCAGCGAGAGCCTTGCGGTCGACCAAATCCTCCTCGCCCCCGCATGGGACGATGTCCCAGTCGACGGAT
CGGGAGTGTCTGGATCGGGTCCACTGTCCGCCATGC----------CGGAGATGGCCGGAAGAGAGTTTGGGGGCCGGAG
TGGAGTTGGACGGTTAGAGTTTGGTTTGGGATGCGGATGAGGACAAATATATGTGGGGTTTAGGTAGGCTACCGTGGATC
GGACCCGACTTGCCGGACACACCCATGCGCGTTCGAACCTCTTCATGTCGCCTTAGATTTTGGGCTGGATACGAAGAGTG
TCGGTCAATCCAGGCATATGGGACCAATATGAGATTTTTTTTATCGATTAGTGAACAATCCATCCGTCGGGCGTAGGGAG
GGGGTAGTGTTGTGTTGGGCAAAGCT-----------------------CAGTCCGACACATGCTAATTGTGGCAGGCAC
GACACGGTCCACGGGGGCATGTTTAGTAAGCGGGTCATGCGGTGCCGGCCCACGTGTTGCACCTCCAGGCCCAGGCACAG
CCTAGTT--TAGACGGGCCGGCACGTTGGCCCGTTTAGCCG---------------------------------------
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------------------------------------------------------------------------GTGATGTG
CTTGGCCCATGGCGGGCCGTGCCGGCGTGCTCGCGGGATGGCCCGGCCCATTTGAGGCTAGATGATCTTACTAGTACTAC
GGCTTTGACAGCCACTCACCTCCAACGATTGTCTCAAAAAAAAA---------------ACCTCCGACGAATTTGAAAAG
GAAAAGCC------------------------------------------------------------------------
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-------------------------------------------------------------------GGAGTCCGACCTC
CGATTCTTGTGGCGGCGAGTGGAAATCTGGATTTGCCGGCGGGCAGGCAAGGTACGTGAGGCGGCGGCGGCGCCGCAAAA
CTTTATTCCGTCTCATGCATGCCCACTCTCTCCACCCTCTCGTCGTTTGATCGTTTCTCTGCTACGCAGCGCCGACGACG
CCCACCGTCTGTTCGACGGAATGCCTCCTGGTAGCGAGGACGAGAGTGCGCCCC---TGAGCGCCACCGACCGCATCGGT
GCACTCCCCGACCATATTCTCCACCACCTGCTCTCTTACCTCCCAGCGCAGGCAGCCGCGCGGACGTGCGTGCTTGCCTG
GCGCTGGCGCCACCTTTGGAAGTCCACTACAGGCCTGCGCATCGTCGGCCTTGACGATGAGGAGACTGTCCAAGTTCAAG
ACCTCCGGAAGTTCATGGATCATTGTCACGCCTTCCTCCAATTCGGCGGACAGCGAGTCGCCGGCTCCAGACTCCCTGAC
AAATGGACCGGCGAACGACGATGACGTGGACGATGAATAGTTACTGTGAGCTGTCGCGT-GGGTGTGTCCCACCTGTAAG
TGTAGAGTGGTATAACTAGGAGATGAGCAGTGGTGCTCGGGGTGTGTTGTAATTGAATCCTGTGAACCTTCTCAT---CT
TTTCAGCTGATAATCTCATCCCCTT-TCGTCTGATATCTCATCCCCTTCTCCAAGCTATCCTCTGATCCCTAGATCTCCA
GATCGGGACACCACAATTGGTAATCAGAGCCTGTGATTGCTCCCCTCGCGCTCACAA-TCCGAGATCAATCCGTAAAATT
CCACTACGAAAGGTGCCTTGATTTGCTTCGGCTCATCGGCTCGAAATCCTTAGCGGGGTTGGATTCGATTCAGGAGAGCC
GCGACGACGCTGTCCAAGATCACGAAGCCCTCGGCGCAGACGGAAATTTTGTTGGGCACAATGGAGAAGATGCAGGCGAC
GTTGGATGAGATCCTGACCCGCTTCACCGCCATGGATACCA-CGTCAAGACCGTCTCCGAGGAGGTCACCAGCCTGCGCA
AACAGGTAGAGGAGTTTGGCGACGAGATGTACCACATCAAGCGCCGCGTCCACGACACCGGCAAGTCAACCCCATCGTCC
TCGTCCGCGCTGCATCAGGAGACC-----------------GCTCCGCCACCTGCCGACAAGGGCCATGGAGTGCCGCTG
CTCGTCAATAATCATCCGCCGCTGCTTGAAACTCCTCAACAGCAGCCGTCCGGATTTCACACCGCGCTGTCATCACCACA
TGAGCAGGATGTGCGGCCCACCCTCCACGCCCAACCAGATCAGGAGGAGTACCGGCCGCGTCAACCACGCCATGATTTTC
CACGTTTCCATGGTGAGATGCCCCTGCTTTGGATAGACCAGTGCTTGACTTATTTCGAGATGTACCGAGTGCCTGTTCAT
CACTGGGTCAGTACTGCTACTCTGTACTTGGATGGATTGGCTGCGATGTGGTTTCAGGCATATAAGTGTTTGCATAGACG
TCTCACTT
>chr6D_1
TCTCGTCAGACCGAATCCGAGAGCCCATTGCC-GACACAATGGATTTCGCTAGATCGAATCTGACCTTAGTCGGGCGCAC
TTCTCACGGGAGCAGAGAGGGCCTTGCGGGTGGCCAAATCCTCCTCGCCCTCGCATGGGACGATGTTCCAGTTGATGGAT
TGGGAGTGGCTGGATCGGATCAGCTGCCCGCCATGCTGGAGAAGTTCGAAGATCGTCGGAAGAGAGTTTGGGGGCTGGAA
TTGAGTGGAGTGACCAGAGTTTGGTCCGGGATGCGGATGAGGACAAATATATGTGGGGTTGGATGC-GCTACTATGGGCC
GGATCCGACATGACAGACGCGCCCGGGTGCGTTCGGACCTTTTCATGTTGCTTTAGA-TTTGGGCTGGATACGAAGGGTG
TCGGTCGATCCAGGCATATGGGACCGATATGAGATTTTTTG-ATCGATCAGTGACCGGGCCGTCTGCCGGGCGTAGGGAG
GGGGTAATGTTATGTTGGGCAAAGCTGGCCAAACCGGCCCAGCATGGCACAGCTCGACCCATGCTAATCGTGCCAGGCGC
AGCATTGTCCACAGGGGCACGTTTAGTAAGCGGGTCGTGCCATGCCGACCCATGTGTTGCGCCTCCAGGCCCAGGCACGA
CCTAGTTAGTAAACGGGACGGGACGTTGGCCCGTTTAGCATGGTGGGCTGCACATTTTCAACCTGTTGGGCTGATTTTTA
GCCATATTGGGCTGTATTTTAGGTATATGTACAAACAAATTATGAAAAAATATATAAAAATAAAACGGGCTGTGCCATGC
CGACCCGCATGCCCAGCCTCTAGGCCCAGGCACGGCCCAGACGTGCCGCGACGGGCACGGCTCATTTGGCTCGTGCTGTG
CCTAGCCCATGGCGTGCTCGCGGGTTGGCCTGAT----TGGCCCAGTCCGTTTGAGGCTAGATGATCTTACTAGTACTAC
GGCTTTGACAGCCACTCACCGCCAACGAGTTTCGAGACCGCTCAAAAACGAGTTTCGAGACCGCTGACGAATTTGAAACG
GAAACACTAACGCCCACACGTGTGGGCGTTTGCATCTCGCCCCCACACGTGGATTCGCGTTCGTTTGTGGGTGCACAAAT
TTTGGCATGTTTGTGGTGCCACGTAGGACTGGGCTGGTGTGTGGGCATTCATTCGGTCCCCCACACGTCCGTTTCACCAC
ACGGAGGGGCCGGTGTGTGGGTGTTTAGCAGTTCGTCCACACGTCAGTTTTCACTCACGCACGGGCTGGTGTGTGGGCAT
TTGCCATCTCGCCCACACGCCTGTCTCCTCTCTCCACACCCAAGCTGCCAGTTGCTATGCGTTTTACAATGTACATGGCA
ACTGCCCTAGCGTACTTGTAAGCAGATGTCAACTCTTTCTTTTTTTTACCCGAACATGTCAGTTGCCATGTGTTTTGCAG
GGTACACGGCAACTGCCCTAGTGTGCTTGTAAGCAGATGGCAACTCTTTTTTTATCCGAACATGTTGTTTTGCCATGTCT
CTTTGTAGCGCTATAGCGCTACACGACAACTGCCTAGTGTTAGTAGGTGGCACTCCTAAGGTTTTCAAATCATGGCAACT
GTAGTAAACCAGACCATACATGGCAATTGATTAGTGTTAGTAGGTGACAACCTCTAAAGTTTTCAAATCATGGCAACTAT
AGTAAACCAGACCATACATGGCAACAGCTGCAGTTGTCCAAAATGCCATCTGACACTTGACCTGAGATGGCAACTGCAGT
TGAGCAACCATGGCAACTGTAGTTGTTCGACATGGCAACTGTAGTTCAGTGACATGGCAACTGCAGTTAAACGGATAATG
AAGAGGGTCCGGACCATGGCAACTGCGGGAACGCGTGGTGACTGTCACGCGGGGCGTGCGGGACCGTGAGGTAGGTGGTT
GAAAGAGCTAGTGTGGGCGTTAGTTGTTTTGTCCACACATGGGCGCTAGTTATTTTGTCCACACATAAGCGTGTGGGCTG
GTCCTTTTAGACACCACACAAAACATGATGTAGGAAGACCCGTGTGACAGTTCGAAAAGGGCAAGCGGGAGTCCGACCTC
CGATTCTTGTGGCGGCGATTGGAAATCTGGATTTGCCGGCGGGCAGACAAGGTACGTGAGGCGGCGCCGCG---GCAAAA
CTTCATTCCGTCTCATGCATCCCCACTCTCTCCATCCTCGCGTCGTTTGATCGTTTCTCTGCTACGCAGCGCCGACGACG
CCCACTGTCTGTTCGACGGAATGCCTCCTGGTAGCGAGGGCGAGAACGCGCCGCTGATGAGCGCCACCGACCGCATCGGC
GCACTCCCTGACCATATGCTCCACCACCTGCTCTCTTTCCTCCCAGCGCAGGCAGCCGTGCGGACGTGCGTGCTTGCCCG
GCGCTGGCGCCACCTTTGGAAGTACACTACAGGCCTGCGCATCGTAGGCCTTGGGGATGAGGGGCCTGTCCATGTCCATG
ACCTCCAGAAATTCGTGGACCAT---------------------------------------------------------
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>chr7D_1241
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-----------------------TGTCACGCCTTCCTCCAATTCGGCGGACAGCGAGTCGCCGGCTCCAGACTCCCTGAC
GAGTGGACCGGCGAACGACGATGACGTGGACGATGAATAGTTACTGTAAGCCATCGCGT-GGGTGTGTCCCACCTGTAAG
-GTAGAGTGGTATAACTAGGAGATGAGGAGTGGTGCTCGGGTTGTGTTGTAATTGAATCCTGTGAACCTTTCTCATCCCT
TTTCTGCTGATAATCTCATCCCTTT-TCGTCTGATATCTCATCCCCTTCTCCAAGCTATCCTCTGACCCCTAGATCTCCA
GACCGGGACACCACAACTGGTAATCAGAGCCTATGATTGCTCCGCTCGCGCTCACAA-TCCGAGATCAATCCGTAAAATT
CCACCTCGAAAGGTGCCTTGATTTGCTTCGGCTCATCGGCTCGAAATCCTTAGCGGGGTTGGATTTGATTCAGGAGAGCC
GCGACGGCGCCGTCCAAGATCACGAAGCCCTCGGCGCAGACGGAAATTTTGTTGGGCACAATGGAGAAGGTGCAGGCGAC
GTTGGAGGAGATCCTGACCCGCTTCACCGCCATGGATACCAGCGTCAAGACCGTCTCCGAGGAGGTCACCAGCCTGCGCA
AACAGGTAGAGGAGTTTGGCGACGAGATGGACCACATCAAGCACCGCGTCCACGACACCGGCAAGTCAACCCCATCGTCC
TCGTCCGCGCTGCATCAGGAGACC-----------------ACTCCGCCACCTGCCGACAAGGGCCATGGAGTGCCGCTG
CTCGCCAATAATCATCCACCGCTGCTTGGAACTCCTCAACAGCAGCCGTCCGGATTTCACACCGCGCTGTCATCACCACA
CGAGCAGGATGTGCGGCCCACCCTCCACGCCCAACCAGATCAGGAGGAGTACCGGCCGCGTCAACCACGCCATGATTTTC
CACGTTTCCATGGTGAGATGCCCCTGCTTTGGATAGACCAGTGCTTGACTTATTTCGAGATGTACCGAGTGCCTGTTCAT
CACTGGGTCAGTACTGCTACTCTGTACTTGGATGGATTGGCTGCGATGTGGTTTCAGGCATATAAGCGTTTGCATAGACG
TCTCACTT
>chr1D_1241
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-----------------------TGTCACGCCTTCCTCCAATTCGGCGGACAGTGAGTCGCCGGCTCCAGACTCCCTGAC
GAGTGGACCGACGAACGATGATGACGTGGACGATGAATAGTTACTGTAAGCCGTCGCGT-GGGTGTGTCCCACCTGTAAG
TGTAGAGTGGTATAACTAGGAGATGAGGAGTGGTGCTCGGGTTGTGTTGTAATTGAATCCTGTGAACCTTTCTCATCCCT
TTTCTGCTGATAATCTCATCCCTTT-TCGTCTGATATCTCATCCCCTTCTCCAAGCTATCCTCTGACCCCTAGATCTCCA
GACCGGGACACCACAACTGGTAATCAGAGCCTGTGATTGCTCCGCTCGCGCTCACAA-TCCGAGATCAATCAGTAAAATT
CCACCGCGAAAGGTGCCTTGATTTGCTTCGGCTCATCGGCTCGAAATCCTTAGCGGGGTTGGATTTGATTCAGGAGAGCC
GCGACGGCGCCGTCCAAGATCACAAAGCCCTCGGCGCAGACGGAAATTTTGTTGGGCACAATGGAGAAGGTGCAGGCGAC
GTTGGAGGAGATCCTGACCCGCTTCACCGCCATGGATACCAGCGTCAAGACCGTCTCCGAGGATGTCACCAGCCTGCGCA
AACAGGTAGACGAGTTTGGCGACGAGATGGACCACATCAAGCACCGCGTCCACGACACCGGCAAGTCAACCCCATCATCC
TCGTCCGCACTGCATCAGGAGACC-----------------GCTCTGCCACCTGCCGACAAGGGCCATGGAGTGTCGCTG
CTCGCCAATAATCATCCACCGCTGCTTGGAACTCCTCAACAGCAGCCGTCCAGATTTCACACCGCGCCGTCATCACCACA
TGAGCAGGATGTGCGGCCCACCCTCCACACCCAACCAGATCAGGAGGAGTACCGGCCGCGTCAACCACGCCATGATTTTC
CACGTTTCCATGGTGAGATGCCCCTGCTTTGGATAGACCAGTGCTTGACTTATTTCGAGATGTACCGAGTGCCTGTTCAT
CACTGGGTCAGTACTGCTACTCTGTACTTGGATGGATTGGCTGCGATGT-------------------------------
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>chr7B_1241
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-----------------------TGTCACGCCTTCCTCCAGTTCGGCGGACAGCGAGTCGCCGGCTCCTGACTCCCTGAC
GAGTGGACCGGCGAACGACGATGACATGGACGATGAATAGTTACTGTGAGCTGTCGCGTGGGGTGTGTCCCACCTGTAAG
TGTAGAGTGGTATAACTAGGAGATGAGCAGTGGTGCTCGGGGTGTGTTGTAATTGAATCCTGTGAACCTTTCTCATCC--
TTTCTGCTGATAATCTCATCCCCTTTTCGTCTGGTATCTCATCCCCTTCTCCAAGCTATCCTCTGACCCCTAGATCTCCA
GATCGGGACACCACAATTGGTAATCAGAGCCT-TGACTGCTCCGCTCGCGCTCACAAATCCGAGATCGATCCGTAAAATT
CCACCGCGAAAGGTGCCTGGA-TTGCTTCGGCT-ATCGGCACGAAATCCTTAGCGGGGTTGGATTCGATTCAGGAGAGCC
GCGACGGCGCCGTCGAAGTCCGTGAAGCCGTCCCCGCAGACGGAAATTTTGTTGGGATCGATGGAGAAGATGCAGCAGAC
CCTGGATGAGATCCTGACGCGTTTCACCACCATGAACACCAAAGTGAAGGCCGTCTCTGATGAAGTGCTCAGCCTGCGGA
AGCAGGCGGAGGATTTCGGCGATGATCTGGACAACATCAAGCGCCGCGTCCATGACTCGGGCAAGCCG------------
--------GCTGCATCATCGACATCAGCGGCACAACTTACAGCGCCGCCATAAGCAGAAAAGGGAACTGGGGCGCCGCTG
TTAGCCAACAACGGACCACCGCTACTCGAGGCCCCACAACTA---------GGTTTCCAGACAGCTCCATCATCACCTCA
TGAGCAGCAAAAAGATCCCACCCACCACATCCAGGTCGAGCGCGAGGAGTATCGTCCGCGCCAACCATGACATGATTTTC
CTCGGTTTCATGGTGAGATGCCCTTGCTCTGGATAGACCAGTGTTTGACATATTTTGACATGTATCATGTGCCTGAGCAT
CATTGGGTTAGTACCGCCACTTTGTATTTGGATGGATTGGCTGCACTGTGGTTCCAGGCGTACAAG--------------
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>chr3A_1456
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--TCAGCTGATAATCTCATCCCCTT-TCGTCTGATATCTCATCCCCTTCTCCAAGCTATCCTCTGATCCCTAGATCTCCA
GATCGGGACACCACAATTGGTAATCAGAGCCTGTGATTGCTCCCCTCGCACTCACAA-TCCGAGATCAATCCGTAAAATT
CCACTGCGAAAGGTGCCTTGATTTGCTTCGGCTCATCGGCTCAAAATCCTTAGCGGGGTTGGATTCGATTCAGGAGAGCC
GCGACGGCGCTGTCCAAGATCACGAAGCCCTCGGCGCAGACGGAAATTTTGTTGGGCACAATGGAGAAGATGCAGGCGAC
GTTGGATGAGATCCTGACCCGCTTCACCGCCACGGATACCAGCGTCAAGACCGTCTCCGAGGAGGTCATCAGCCTGCGCA
AACAGGTAGAGGAGTTTGGCGACGAGATGGACCACATCAAGCGCCGCGTCCACGACACCGGCAAGTCAACCCCATCGTCC
TCGTCCGCGCTGCATCAGGAGACC-----------------GCTCCGCCACCTGCCGACAAGGGCCATGGAGTGCCGCTG
CTCGTCAATAATCATCCGCCGCTGCTTGGAACTCCTCAACAGCAGCCGTCCGGATTTCACACCGCGCCGTCATCACCACA
TGAGCAGGATGTGCGGCCCACCCTCCACGCCCAACCAGATCAGGAGGAGTACCGGCCGCGTCAACCACGCCATGATTTTC
CACGTTTCCATGGTGAGATGCCCCTGCTTTGGATAGACCAGTGCTTGACTTATTTCGAGATGTACCGAGTGCCTGTTCAT
CACTAGGTCAGTACTGCTACTCTGTACTTGGATGGATTGGCTGCGATGTGGTTTCAGGCATATAAGCGTTTGCATAGACG
TCTCACTT
>SNPs
----S-------------------------S-S-------------S---------S-----------------------
-------SS------S---S---------SS-S-----------------S---------------S-----S--S----
S-------S---------S--SS---S---------------------S----S-S-------------------S---S
-S----S-SSS-SSS----------SS---------------------------------SSSSSSS-----SS---SS-
---S-----S--S-S---S-S---SS-S-------S----S-------S--S-----S------------------S---
------S------------------S--------------SS------S-----S-SSS--S--S-S-------------
------S----S----------------------------------------SS----S---------S---S-----S-
SS--SS------S------S----------------S---SS-----S----S-------S-----------------SS
-----------S-----S---S-----------------SS---------------------------------------
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---------------------------------------------------------------------------S----
-S-S----------S--SSSSSS-SS-SS--SSSSSSS------S-S--S------------------------------
--------------------S-------S-S--SSS-SSSSSS-------------------S-S-------------S-
----SS-S------------------------------------------------------------------------
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------------------S---------------------------S-------------------S--SSSSS------
---S----------------S-------------S----S----------------------------------------
-----S---------------------------------S-----SS-----S--------------------------S
--------S--------S-------------------S--------------------S-------------------S-
-----------------------S---------------------S-------SS-------S-S-------S--S--S-
------S---S---S----S------------------------------------------------------------
S-S-----------------------------------------------------------------------------
----------------------------------------------------------------------SSSSS-----
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-----S--------------------------------------------------------------------------
------S-------------------------------------------------------------------------
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-----------------------------S--------------------------------------------------
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>forward_161
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-------------------------------------------------------------GATGTCCCAGTCGACGGAT
C-------------------------------------------------------------------------------
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>reverse_2500
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-------------------TCATTGTCACGCCTTCCTCC-----------------------------------------
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>forward_372
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--------------------------------TCGAACCTCTTCATGTCGCC----------------------------
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>reverse_2967
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------ACGCTGTCCAAGATCACGAA------------------------------------------------------
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