>input_sequence_83900
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------ATGGAGGGGCTTTCTCAGGCCTTGATGAGA
AGTAATCTGCCGGTGATGGTAGAATTGGATTCTCTACAAGCTGTTAGAATGATTCAGTCTGGCGACAATGACAGATCGGT
TTACTCTTCCTTGGTTGAGGAGATAAAGCTACTCCTAAACCTACATAGAGCTAGTATTACTGATATTAGACGCTCACAAC
ATAAGGTTGGCAATTGTTTGGCTATCTTTGCTTGTGTGGAAGGCAAAACTATGATTTGGCTAGGGTCTGGCCCTCCTCGT
GAGGCGATTGAGTTGAACAATGTTGATTGTAATCCTCTTCTCGTTGAGTAA-----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------
>chr5D_1_TraesCS5D01G264600
ATTGGTAAGCTAAAATTTTAAAAATTATCATAGTTTAAGCAGAATATGTCCTTTTGCCCCCCCATAACTCGGCTTTGCCC
CCTCAACAATCTCTGTCAAGCTCCGCCACTGGCCATAGGTTGATTCAGTAACAGCCAACAGGGACCTTTTTATGGACTGA
TAAAGGGCAAACTATTTCTGCTTGATTGTCTCTGTTGACAGGGCAAACAGCACGCTC----CGGCCCTGAAGATCATTTG
ACATCCGTCATGAGGGATGGACTCCAGAAGACATGTGCTTTCATCCTTCTAGCGCAATCGATAAAATTTCATGGGTTGCT
GAAACAGCATCATTGTCTGCGTGATTCCTGGGAGGAAAGTAGACCTGCATTTGGAGGCACAATCTCCGACTGGAAACACA
CTTCAGATGGCTTTATTTTCCAGGTAAACATTCCCAACAACCTATCTTGCTCATACGTGCAAATGAATGATAGTCTGCCG
ATTTCCGGAACCTAATTTCCACACCGGATAAATTCCAGAGAGAGAACAATTTAGATATCCGTAATTCTACAAGTGTATGG
CTGGGTGATTTTGCTACATATGCACGGTGTGCATTTCAGGGTATATCGGGTTCAGCTCAGAGCTCACGAAGCACAATGCA
CGGTGATTTTGCTAACCATTGCCCTCTGGGACTGATGATGGCTCTTTTGTAGTCACTTGCTCGTCGTTCTTTCGGTCCAT
GCTCCTCGTGCACTACTCCACAAAATATGTCCCTTTTGGAACTGCCAGAAGCCTCTGGGA------ATATGCGTGGTTGT
TCTGCTCTGCTACTGGAGGTGATTGTCCAACAAAAGGATGCACTTATGTTCCAGCCATGACTTGTGCCGAAATGTATACT
ACGTACTCCGCAAAAATATTTGCTCCACAGTCCACACAAGTGTGTGGGTGTCGTTGGTATCTTGATCGTGATCATAGCGG
AGGGCCTACTCTACTCCTAGGACGGTTTGGAAGCTGAATTTGGTGCGTGTATGGAGGGGCTTTCTCAGGCCTTGATGAGA
AGTAATCTGCCGGTGATGGTAGAATTGGATTCTCTACAAGCTGTTAGAATGATTCAGTCTGGCGACAATGACAGATCGGT
TTACTCTTCCTTGGTTGAGGAGATAAAGCTACTCCTAAACCTACATAGAGCTAGTATTACTGATATTAGACGCTCACAAC
ATAAGGTTGGCAATTGTTTGGCTATCTTTGCTTGTGTGGAAGGCAAAACTATGATTTGGCTAGGGTCTGGCCCTCCTCGT
GAGGCGATTGAGTTGAACAATGTTGATTGTAATCCTCTTCTCGTTGAGTAATACAAGTGTTTTACCCGCAAAAAAAAGAG
ATCGTGATTATAATGATATTGGGGAGGTTTTACTTGATGCATCTTCATTTGTTTCTGTTA--------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------GTGTCAAAGAGCGTGGCTGTAGGTAAGTCGACTGAGTTTTCAATTAGGGTCAGCCGATTCGTTTTGGACG
TCGGATGCAGATCCAACGGTCCGCGGCCCTTCT---TCCTGGAGCCCAACGTACCACCAGCCACCACTGCCTGCG----G
CTGGCGGCGCTCCCTTGTAGCCTCGCTGCCCACCATGCTGCCCCTCCCCCACCGCTAGCAAGCCCCTTCCTTCCCTCCGG
CGTCTTCTTCTTCCCTTCGGTGCCTGCTTCCTTCTTCTAGCGAAAACCGACCGGCCCAAATTGGATTTTCAGGCGACTAA
CGTTTAACTATTGTGTAAAGTTGTCTAAAAAAACTATTGCGTTAAAAAAAGGCATCCATCAACGCCCATCTCGTTGGTGC
GCTACTACGATCAGCATACCAACGAACACACCTTGTTCCATCGACAAGAAACTGAACACCCCGCCCATCTCGCCAATGGA
TCCAGGCAACAACG----TTTGTTAAACGAGCACTGCGACTTACTAGCATGCATTCGTTAAGAGTTTCAAAAAAAGAAGC
AGCATTCGTTAGAGTTTCAAAAAAAAAAGAAGCATTCGTTGGCATTTTTTTTCCCTTCAGCGGAGCATGCACCGGCTGGC
AATGCCAGCCCTAGCTGCACGGGCCGCCTGGGCCTGGCGTGCACGTCTCCATCGGTACATTCTGCATGAACATAATGCAT
GCTCCCCCACCGG---------TCTCCCCGTTATATACTCCGATCCCACCACCCCCTTCCCAGGAGCTCGACATCGCGAC
GTCGACGTACGGGCCCTCTCCTTCGTCGTCTCGATCAGGCCTCTCGTCTCGTCTCAGGTGCGTCGCGTGCATGCTGTCGC
CGTCGCCGCCATGCGTATGATATTATATGGTTTGAAGCTAGGTCAGGTCGAGAGGCCGGAT
>chr5B_111
--------------------------------------------------------------------------------
------------------------------GGCCATGGTTTGATTCAGTAACAGCCAACAGGAACCTTTTTATGGACTGA
TAAAGGGCAAAGTTTTTCTGCTTGATTGTCTCTGTTGACAGAGCAAACAGCACG-----TGCGGCCCTGAAGATCATTTG
ACATCCTTCATGAGGGATGAACTCCAGAAGACATGCACTTTCATCCTTGTAGCGCAATCACTAAAATTTCGCAGGTTGCT
AAAACAGCATCATTGTCTTCATGATTCCTGGGAGAAAAGTAGACCTCCATTTGGAGGCACAATCTCCGACTGGAAACACA
CTTCAGATGGCTTTATTTTCCAGGTAAACATTCCCAACAACCTATCTTGCTCATACGTGCAAACGAATGATAGTCTGCGG
ATTTCCTGGACCTAATTTCCACACCGGATAAATTCCAGAGAGAGAACAATTTAGATATCCGTAATTCTACAAGTGCAAGG
CTGGGTGATTTTGCTACATATGCATGGTGTACATTTCAGAGTATATCGGGTTCAGCTCAGAGCTCACGAAGCGCAATGCA
CGGTGATTTTGCTAACCATTGCCCTTTGGGACTGATGATGGCTCTTTTGTAGTCACTTGCTCGTCGTTCTTTCGGTCCAT
GCTCCTCGTGCACTACTCCACAAAATATGTCCCTTTTGGAACTGCCAGAAGCCTCTGGGACTGGGAATATGCGTGGTTGT
TCTGCTCGGCCACTGGAGGTGATTGTCCAACAAGGGGATGCACT------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------TGATTCAGTCTGGCGACAGTGACAGATCGGT
TTACTCTTCCTTGGTTGAGGAGATAAAGCTACTCCTAAACCTACGTAGAACTAGTATTAATCATGTTAGACGCTCACAAC
ATAAGGTTAGCAATTATTTGGCTATCTTTGCTCGTGTGGAAGGCAGAACTATGATTTCGCTAGGGTCTGGCCCTCCTCGT
GGGCCGATTGAGTTGAACAATGTTGATTGTAATGCTCTTCTGGTTGAGTAATACAAGTGTTTTACCCGCAAAAAATA-AG
ATCGTGATTATAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNGTGTAAAAGGGTGTGGCTACAGGCAAGTCGACTGAGTTTTCAATTAGGGTCAGTCGATTAGTTTGGGGTG
TCGGATGCAGATCCAATGGTCCGCGGCCCTTCTCCTTCCTCCAGCCCAACGTACCACCAGCCACCACCGCCTGCATGCAG
CCGGCGGCACTCCCTCATAGTCTCGCTGCC--------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------
>chr5A_111
--------------------------------------------------------------------------------
------------------------------GGCCGTGGGTTGATTCAGTAACAGCCAACAGGAACCTTTTTATGGACTGA
TAAAGGGCAAACTATTTCTGCTTGATTGTCTCTGTTGACAGAGCAAACCGCAAGCATGCTGCGGCCCTGAAGATCATTTG
GCATCCTTCATGAGGGATGGACTCCAGAAGACATGTGCTTTCATCCTTATAACGCAATCACTAAAATTTCGCAGGTTGCT
AAAACAGCATCATTGTCTGCATGATTCCTGGGACAAAAGTAGACCTCCATTTGGAGGCACGATCTCCGACTGGAAACACA
CTTCAGATGGCTTTATTTTCCAGGTAAACATTCCCAACAACCTATCTTGCTCATACGTGCAAATGAATGATAGTCTGCCG
ATTTCCGGAACCTAATTTCCGCACCTGATAAATTCCAGAGAGAGAACAATTTAGATATCCGTAGTTCTACAAGTGTAAGG
CCGGGTGATTTTGCTACATATGCATGGTGTGCATTTCAGGGTATATCGGTTTCAGCCCAGAGCTCACGAAGCGCAATGCA
CGTTGATTTTGCTAAGCATTGCCCTCTGGGACTGATGATGGCTCTTTTGTAGTCGCTTGCTCGTCGTTCTTTCGGTCCAT
GCTCCTCGACAAGGAACCC-------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------AACACCCCGCCCATGTCGCCAACGGA
TCCAAGCAAAAACGAACGTTTGTTAAACGAGCACTGCGAGTTACCAGCATGCATTCGTT-AGAGTTTCAAAAATAAAG--
AGCATTCGTTAGAGTTTCAAAAAAAAAT---GCATTCGTTGGCATTTTTTTTCC-TTCAGCGGGGCATGCACCGGCTGGC
AATGCCAGCCCTAGCTGCCCGGGCCGCCTGGGCCTGCCGTGCACGTCTCCATCGGTACATTCTGCATGAACATAATGCAT
GCTCCCCCACCCTCTCCACCGATCTCCCCGTTATATACTCCCACCAC----CCCCCTTCCCAGGAGCTCGACATCGCGAC
GTCGACGTACGGGCGCTCTCCTTCGTCGTCTCGATCAGGCCGACC-TCTCGTCTCAGGTACGTGCATGC-----------
-------------------------------------------------------------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------S-------------------------S-----------------
-----------------------------------------S-------------SS-----------------------
------S-----------------------------------------S----------SS---------SSS-------
S-------------------S-------------S-----------S---------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------S--
------------------------S-----------------------------------------------S-------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------S--S----------------------SS---------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------------S------------
--------------------------------------------S----S---------S-S--S---------------
--------S------S----------------S------------S-----------S----------------------
-S-S-----------------------------S-------S---------------------------------S-S--
--------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------S----S-S------SS---S-----------------------------S-----S----S--SS-
----------------S-----------------------SS-------------------------S------S-----
-S------S------SS---S---------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------S-------S---
----S----S-----------------------------S----S--------------S-------------S-S-SSS
---------------------------SSSS-----------------------S--------S----------------
------------------S-----------------S-------------------------------------------
-----------SS----------------------------S-S-S-SSSS-----------------------------
--------------S--------------------------SSS-S-------------S---SSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_935
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------ACAAGTGTGTGGGTGTCGTT-------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------
>reverse_2596
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------AGCTAGGTCAGGTCGAGAGG------
