>input_sequence_83859
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------------------------------------------------------------ATGGAGGCGGGTGCGGGGCC
TCCGAAGCCCGCGGCCACGGCGAAGGTGGCGTCGTCGTCGTCGTCGTGGTGCTCGTCCGTGGCCGCCACGGCGGCGAGCC
TGGTGGCGGTGGGCCTGGGCGGCGCGGCGCTGCTGGTGTGGTGGGCGCTGGCGTTCCACCCGGCGCACGCGCGGCTCTGG
ATGGTGCCCGCGGGGCTGGTCCTCCTCGGCACGCCCGTCCTCGCCTGGCTCTCCCTCTTCGCCTCCGGCCCGTGCCGCTG
CGGCCGCCGCC---CGGTCGACGCGCCGGAGCCTCCGGCGCCGGGCGCACACGCAGCCGCTTAG----------------
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>chr2D_1_TraesCS2D01G394600
ACGTCGGGCCGCTGGGATGCATACCGTACGTCCGCGCCCTGGAGTTCATCCCTGCGGGCGAGTGCTCGGCGGCTGTGAAC
AAGCTCTGCGAAGGCTACAACAAGAGGCTGAAGAGGATGATCGGCAGGCTGAACCAGGAGACGGGCCCGGAGAGCGCGTT
CGTCTACACCAACACCCACGGCATCGTCATGGAGATCATCCGGCAGCACCGTCAATACGGTAGCAGGATTTTCTTTCTTG
CGTGCTGCAGA----TTCGCATTTCGTGGACTGAGAGTTGGATCTGTGT-CGTAGGTTTCGAGGAGGCGCTGGACCCTTG
CTGCGGCGGCAGCTTCCCGCCGTTCCTCTGCACCGGCGTCGCCAACTCGAGCTCCGCCACCCTGTGCGAGGACCGCTCCA
AGTACGTGTTCTGGGACGCGTTCCACCCGACCGAGGCCGTCAACTTCATCGTCGCCGGCAGGATCGTCGACGGCGGCGCC
GCCGATGCGTCGCCCGTCAACGTCCGCGCCTTGTTCCAGCGTCGATACGGATGAACGAGGAGGTCGCCTTGCGTGCGTGC
GTGCGTGCATGCACCGCATCGCGGAATATCTCCTCCTTCCCTCGCGCAGCACTTGCTGCACGTCTTCAAACGTGTAGAAC
GTGACGGGCGACGGTGACTTTGACGCGCGGCATTTTTTCTTTTCTTTTTCCTTGTCT-CTGCTGTTGCCTTTGGCTCCTT
TGTGAAGGCCGGAAAGAAGATCGCTGTTGTCGAAAGGAACAATTCGGAACGAC---CGACGGACGGTAATATATACTGGC
GTACGTGCGGTCTACAGAGGCGCATAAGTGCGGAGCAGTAGAGACTAGAGACTGGTAGCGCACGTTT---TTTTACGGGA
CTGTTCTGCACAGCGCCGCCGGTGCAGCTTCCAGCCACGCCACGCCACGCCA--------CGCGGGTATATATGCGTGCA
ACACTTGGACTCGATCTGTTGACGGCGGCCGGGCGGTGCCAGGCACGTACGTAGCCTTCCATGGAGGCGGGTGCGGGGCC
TCCGAAGCCCGCGGCCACGGCGAAGGTGGCGTCGTCGTCGTCGTCGTGGTGCTCGTCCGTGGCCGCCACGGCGGCGAGCC
TGGTGGCGGTGGGCCTGGGCGGCGCGGCGCTGCTGGTGTGGTGGGCGCTGGCGTTCCACCCGGCGCACGCGCGGCTCTGG
ATGGTGCCCGCGGGGCTGGTCCTCCTCGGCACGCCCGTCCTCGCCTGGCTCTCCCTCTTCGCCTCCGGCCCGTGCCGCTG
CGGCCGCCGCC---CGGTCGACGCGCCGGAGCCTCCGGCGCCGGGCGCACACGCAGCCGCTTAGCGACCTG----CTTGT
ACGTAGCTTGCAGTTGCTTCACCTGCCGAAT-CCATTCTTCCGTACGCATGCAGTAGCTTCTCTTCTCTCGGCACGTACG
TGCGTGTTTAATTAGTTTGCTCTGCTGCTTCTTGCTCGCTCCGGGATCAGATCGGACCTGACCAGATGTACACAGCCA--
-TACATATGTTCAGCTTTTGTTTCTATGTCCAG--------GATCACTACTGCTGCTTCGGTTTCTTCGTTACTTTGCAG
TGTTCTTGCCCTTGCTCTTGTTCACCCCGCAGACGTTCTTCCCGATGCTGACGACCGATCAAGTGCCAACTTTCTCATCC
GTTCACGCGCAAACGATTTTGTTCGTTCACGCGGCGCCGAAAGTCTAAAGCGGGCAGGCGAGCGAGAGTGTGCGTGTGCC
GAATCCTACGCCGCCACACTCCGCTCCGTCGGATCGGTCTCGATCGGCGGTCGGATCGGGAGGTGGACGTGCACTACGCG
CGCGCGGGGCCCCAGGGAATGCTCGCTCCCCTCTTGCCGGATAGGGACGGGTTCCACTTCCACTCGGGCAGCGATCTTTC
GGT-GTTTACAACGGGTGTTATCTTAGGTAGGTGGTGCGATTAGCGATAAGGATTTAGG---------------------
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--------------------------------------------------------TATTGGAGCTGGAACTTATGAGT-
--CTAGGCCTATCGTAAGAGGATCCAAGTAAACTTTTGTCATCTTGTCATCCTAGTTTAACA---AGATAGCGCGTTAGG
TTCGAGTCCAGTCACCGCGCACAATGGTCTGATAGTACGTGTGATGAGAGATTCCCAGGTTACTACTCCTACTTGACAGG
GCAGGCGGATGCGATAGGAGCCTAGTTCCTGATAGGACAGTACATAGTTCAATGTAAAAACTAGTAGTTCTGAATTACAA
GATGTTCTACTTGGAGCATGTTTTAGTGTGTTTGTTTACTCATTTCAGTCTATGTAGTTCATATTGACATCTTCTAATAG
TGAATGGAGGGAGTAGAGTAATATTGCGAGGGGAATTTGGAAAC
>chr2B_1
ACGTCGGGCCGCTGGGCTGCATACCGTACGTCCGCGCCCTGGAGTTCATCCCTGCCGGGGAGTGTTCCGCAGCTGTGAAC
AAGCTCTGCGAAGGCTACAACAAGAGGCTGAAGAGGATGATCGGCAGGCTGAACCAGGAGATGGGCCCGGAGAGCGCGTT
TGTCTACACCAACACCCACGGCATCGTCATGGAGATCATTCGGCAGCACAGTCAATACGGTAGTAGGATTTTCTTTCTTG
CGTACTGCAGGCGGGTTCGCATTCCGTGGACTGAAACTTGGTCATGCGCACGTAGGTTTCGAGGAGGCGCTGGACCCTTG
CTGCGGCGGCAGCTTCCCGCCGTTCCTCTGCATCGGCGTCGCCAACTCGAGCTCCGCCACCCTGTGCGAGGACCGCTCCA
AGTACGTGTTCTGGGACGCGTTCCACCCGACCGAGGCCGTCAACTTCATCGTCGCCGGCAGGATCGTCGACGGCGGCGCC
GCCGATGCGTCGCCCGTCAACGTCCGCGCCTTGTTCCAGCGTCGATACGGATGAACGAGGAGATCGCCTTGT--------
GTGCGTGCGTGCACCGCATCGTGGAATATCTTCTCC---CCCCGCGCAACACTTTCCGCACGTCTTCAAACGTGTAGAAC
GTGACGGGCGACGGTGACTTTGACGCGCGGCAA-TTTTCTTTTCTTTTTCCTTCTCTGCTGTTGTTGCCTTTGGCTGCTT
TGTGAAGGCCGGAAAGTAGATCGCTGTTGTAGAAAGGAACAATTCGGAACGACGACCGACGGACGGTAATATATACTGGC
GTACGTGCGGTCTACAGAAGTGCATAAGCGCGAAGCAGTAGAGAGGAGTA----GTAGCGCACATGCATATTTGACGGGA
CTATTCTGCACACCGCCGCCGGTGCAGCTTCCAGCCACGCCACGCCACGCCAG--------GCGGGTATATATGCGCGCA
ACACTTGGACTCGATCTATTGACGACGGCCGGGCGGTGCCAGGCGCGTACGTAACCTTCCATGGAGGCGGGTGCGGGGCC
ACCGAAGCCCGCGGCCACGGCGAAGGTGGCGTCGTCGTCGTCGTCGTCGTTCTCGTCCGTGGCCGCCACGGCCGCGAGCC
TGGTGGCGGTCGGTCTGGGAGGCGCGGCGCTGCTGGTGTGGTGGGCGCTGGCGTTCCACCCGGCGCACGCGCGGCTCTGG
ATGGTGCCCGCGGGGCTGGTCCTCCTCGGCACGCCCGTCCTCGCCTGGCTCTCCCTCTTCGCCTCCAGCCCGTGCCGCTG
CGGCCGCCGCC---CGGTCGA------GGCGCCTCCGGCGCCGGGCGCACACGCAGGCGCTTAGCGACCCGCCTCC----
ACGTAGCTTACAGCTTG---------------CCATTCTTCCGTGCGCATGCAGTAGCTTCTCTTCTCCCGACACGTACG
TGCCTGTTTAATTAGTTTGCTCTGCTGCTTCTTGCTCGCTCCGGGATCAGTTGAGATCATACCACATGTACACAGCCA--
-TACATATGTTCAGCTTTTGTTTCTATGTCCAG--------GATCACTTCTGCTGCTTGGGTTTCTTCGTTACTTTGCAG
TGTTCTTGCG------CTTGTTCACGCCGCAGACGTTCTTCCCGATGCTGACGATCGACCAAGTGCCAGCTTTCTGATCC
GTTCACGCGCAAACGATTTTGTTCGTTCACGCGGCGCCGAAAGTCTAAAGCGAGC----------GAGTGTGCGTGTGCC
GAATCCTACGCCGCCACACTCCGCTCCGTCGGATCGGTCTCGATCAGCGGTCGGATCGGGAGGTGGACGTGCACTATGCG
CGCGCA-GGCCCCAGGGAATGCCCGCCCCCCTCTTGCCGGATTGGGACGGGTTCCACTCGGCAAGCAAAAAAGATCTTTC
GCTGGTTTACAACGGGTGTTATCTTAGGTAGGTGATGCGATTAGCGATAAGGATTTAGG---------------------
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--------------------------------------------------------TATTGGAGCTGGAGCTTATGAGT-
--CTAGGCCTATCGTAAGAGGATCCAAGTAAACTGTTGTTATCTTGTCATCCTAATTTAACA---AGATAGCGCGTTCGG
TTCGAGTCCAGTCACTGCGCACAATGGTCTGGTAGTACGTGTGATGAGAGATTCCCAGGT----------ACTTGACAGG
GCAGGCGGATGTGATCGGAGCCTCGTTTCTGATAGGACAGTACATAGTTCAACGTAAAAACTAGTAGT------------
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>chr2A_1
ACGTCGGCCCGCTGGGCTGCATACCGTACGTGCGCGCCCTGGAGTTCATCCCTGCGGGCGAGTGTTCGGCGGCTGTGAAC
AGGCTCTGCGAAGGCTACAACAGGAGGCTGAAGAGGATGATCGGCAGGCTGAACCAGGAGACGGGCCCGGAGAGCGCGTT
CGTCTACACCAACACCCACGGCATCGTCATGGAGATCATCCGGCAGCACCGTCAATACGGTAGCAGGATTTTCTTTCTTG
CGTGCTGCAGGCAGGTTCGCATTTCGTGGACTGAGAGTTGGATCTGTGT-CGTAGGTTTCGAGGAGGCGCTGGACCCTTG
CTGCGGCGGCAGCTTCCCGCCGTTCCTCTGCATGGGCGTCGCCAACTCGAGCTCCGCCACCCTGTGCGAGGACCGCTCCA
AGTACGTGTTCTGGGACGCGTTCCACCCGACCGAGGCCGTCAACCTCATCGTCGCCGGCAGGATCGTCGACGGCGGCGCC
GCCGATGCGTGGCCCGTCAACGTCCGCGCCTTGTTCCAGCGTCGATACGGATGAACGAGGAGATCG--------------
--GCGTGCATGCACCGCATCGCGGAATATCTCCTCC---CCG-GCGCAACACTTGCTGCACGTCTGCAAACGTGTAGAAC
GTGACGGAGGACGGTGACTTTGACGCGCGGCAA-TTTTCTTTTCTTTTTCCTTCTCTCCGCTGTTTGCCTTTGGCTCCTT
TGTGAAGGCCGGAAAGTAGATCGCTGTTGTCGAAAGGAACCATTCGGAG---CGACCGACGGACGGTAATATATACCGGC
GTACGTGCGGTGTACAGAGGTGCATAAGTGCGAAGCAGTAGAGAGTAGAGACTGGTAGCGCACG-TT---TTTTACGGGA
CTGTTCTGCGCAGCGCCGCCGGTGCAGCTTCCGGCCACGCCACGCCACGCCACGCGCCCACGCGGGTATATATGCGCGCA
ACACTTGGACTCGGTCTGTTGACGACGGCCGGGCGGTGCCAGGCGCGTACGTAGCCTTCCATGGAGGCGGGTGCGGGGCC
TCCGAAGCCCGGGGCCGCGGCGAAGGTGGCGTCGTCGTCGTCGTCGT---TCTCGTCCGTGGCCGCCACGGCGGCGAGCC
TGGTGGCGGTGGGCCTGGGCGGCGCGGCGCTGCTGGTGTGGTGGGCGCTGGCGTTCCACCCGGCGCACGCGCGGCTCTGG
ATGGTGCCCGCGGGGCTGGTCCTCCTCGGCACCCCCGTCCTCGCCTGGCTCTCCCTCTTCGCCTCCGGCCCGTGCCGCTG
CGGCCGCCGCCGCCCGGTCGACGCGCCGGAGCCTCCGGCGCCGGGCGCACACGCAGCCGCTTAGCGACCTGCTTACTTGT
ACGTAGCTTGCAGTTGCTTCACCTGCCGAATACCATTCTTCCGTGTGCATGCAGTAGCTTCTCTTCTTTCGACACGTACG
CGCCTGTCTAATTAGTTTGCTCTGCTGCTTCTTGCTCGCTCCGGGATCAGATGAGATCAGACCAGATGTACACAGCCATA
CTACATATGTTCACCTTTTGTTTCTATGTCCAGCCGTCCAGGATCACTACTACTGCTTGGGTTTCTTCGTTACTTTGCAG
TGTTCTTGCTCGCGCCCAAACGTTTTCC---GACGTTCTTCCCGATGCTGACGGCCGATCAAGTGGCGACTTTCTGATCC
GTTCACGCGCAAACGATTTTGTTCCTTCACGCGGCGCCGAAAGTCTAAAGCGAGCTAGCGAGCGGGAGTGTGCGTGTGCC
GAATCCTACGCCGCCACACTCCGCTCCGTCGGATCGGTCTCGATCAGCGGTCGGATCGGGAGGTGGACGCGCACTACGCG
CGCGCG-GGGCCCAGGGAATGCTCGCCCCCCTCTTGCCGGATAGCGACGGGTTCCACTCGGCAGGCAAAAAAGATCTTTC
GCTGGTTTACAACGGGTGTTATCTTAGGTGGGTGATGCAGTTAACGATAAGGATTTAGGCCCTTCCCAGTGCTCCAGTGT
GGACAGATGCTAAGCATGCCACATAAGCGGAAAAATGACATGGCACATCATTTAAAAAGGGGAGAGAGCACTTTGGTGAT
CCCAGGAAGAATCAATGCCAAGCGCGAGAACCTAGGCAAACCACTTAAATGAAACAATTTGACCAATGCATGAAAGACTT
TAGGTGTTAACTCATTAAATAAAGTGTGATTAGTAACAACAAGTTAAGCACATATGCATTGGGGGGTTGAGTTGCTAAGG
TATTTAATGCACTTAGCACCTCATCTAAGCACCATTGCATTGGGAGAGGTCTAAGGTATTGGAACTGGAACTGGTGAGCC
TACTAGGCCTATCGTATGAGGATCGAAGTAAACTTTTGTTATCTTGTCATCCTACTAGTTTTAGCAGATTGCGCGTTCGG
TTCGAGTCCAGTCACCGCGCACAATGCTCTGACAGTACGTGTGATGAGAGATTCCCAGGTT---------ACTTGACAGG
GCACGCGGATGCGATCGGAGCCTCCTTTCTGATAGGACAGTACATAGTTCAATGTAAGAACTAGTAGTTCTGAATTACAA
GATGTTCTACT---------------------------------------------------------------------
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>SNPs
----------------S-----------------------------------------------S---------------
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----------S---------------------------------------------------------------------
--------------------------------S-----------------------------------------------
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--------------------------------------------------------------S--------SSSSSSSSS
------------------------------------SSS--S------S-------------------------------
--------------------------------SS-------------------S-------S------------------
----------------S---------------------------------------------------------------
--------------------S-----------S-----------S-----------------------------------
----------------------------------------------------------------------------S---
------------------------S-------------------S-----------------------------------
-----------------------------------------------S--S-----------------------------
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--------------------------------------------S--------------------------S--------
---S------------------------------------------------SS--S-S---------------------
----------------------------------------------------------S---------------------
---------S-SS--S---------S-------------------------------------------------S----
----------------------------------------------------S--SS-------S---------------
---------------------------------------------S----------------------------------
------S-------------------S-------------------------------SSSSSSSSSSS-SS--------
-S--------------------------------S---------------------------------------------
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---------------------------------------S--------------S----------------------S--
-------------------------------------------------------------SSSSSSSSS----------
---------------S-------S---S----------------------------------------------------
-----------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_985
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-----TGGACTCGATCTGTTGACGG-------------------------------------------------------
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>reverse_2466
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-----------------------------------------------------------------CTCCTACTTGACAGG
GCAGG---------------------------------------------------------------------------
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