>input_sequence_83845
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---------------------------------ATGCGACTGTTCTTCAAGCTCTTCGCCGTCTTGGCCATCATGGCTGC
TCTGTCGGCCACAAATGTGCCGTCGCTAGTTGGTGTATGGGGGAGGACGCCGGGGAGAGCCCCACCTTCGCCGAGGTCGT
CCCCGCGTAGGAGTTCCGCGAAACCGACTCGTCCCAGGCCACCGCCTCCGCCACCGGCGCAGAAGGGCAGAGTGAGGCCA
CTGCGTTCACCGCCCCCGCCTCCACCACCACCACCACCACCACCGCCACC---ACCATATCGCCAACGAGGCGTCCGCCC
TACGCAGTCTCCTGCACTACCACTACCGTGCCACTAG-------------------------------------------
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>chr1A_1_TraesCS1A01G179200
TCACATGGGTGGGCCCAAACTGATGAAATACAGTGGCTGAAATGAAGAAAACAGTGGAATACAAAGATACAACTTAGTAC
AGCTTTTGAGGTGGCAGGACTCTATTGGCTGTGTAAAAAGAGGTTTGCGGGGCACATGCACATTAACCATTGGTGTGTCC
GT----------CAGATGTTGGCACTGCTCATGCACAGGCACAGCATTCATCACGGGCATTTAGTTTGCTGCATAAATTC
AGCCCACAATGGAATGG-CACCTAAAGTCTGAGAGCATTTCCCTTCGCCAACAATGGCAAGATTCCTCTCCTGCTTTCTG
GCTCAGGCTCTCCTAATCCTAGTAGCAACGTTGGTCACTTCGAAGGCCACAGAGGAAGGCCGAGCTCGCTCCTGCTACAC
GCCACCGGTGCCAACTCCGGCGTCTTCTGGCCAACGTGACCAGACCCCAGCAGCATCAGTGGGACTTCTTGGTTCGAGAT
CACCACTAGAAGCTCCGCCGCCGCCAGAACCACACCGTCTCCGCCACCGGTACCCGAGGGGGGCTCCACCCGAACAGCCG
CCTCCGCCACCACCACTCTCGCCGCCA---------------------------CCGCCGCCACCACGATTCTCGCCTCC
GCCTCCGC------CATCGCCACTCTCGCCGCCA---------------------CTTAATTAGC---------------
-------ACTTTCACTTCCCCGCATTGCCATATTTCTCAGCATCACCACGTTGTATCTGCACTTTA---CATGTTTTAAG
C---TAGTTTTCGGAGCAATGTAACACTATGGATTTTTATCTTCCTTTGCCCAGTGAGAAATTTTTCGAGCCAGTGAGGA
TATCGAAGTATTCTCTCGATTTTTTTGTTTGCCTGCCCAAGTGCCCG---AGTACTTCAGGGCAGAAAACCTTGACCTTG
GGTTTCTACATGGCCAAACGCTGGATGCGTTGACGCGACAGCTCGATCATCTTTCACAGCTGTAAACTCAGGCCATGATT
CCCGAACAAATGCAAGTCAAGTCAACTACTCCAAGTTTTCAGTATAAGTTCGGCT-------------------------
--------------------------------GATGCGACTGTTCTTCAAGCTCTTCGCCGTCTTGGCCATCATGGCTGC
TCTGTCGGCCACAAATGTGCCGTCGCTAGTTGGTGTATGGGGGAGGACGCCGGGGAGAGCCCCACCTTCGCCGAGGTCGT
CCCCGCGTAGGAGTTCCGCGAAACCGACTCGTCCCAGGCCACCGCCTCCGCCACCGGCGCAGAAGGGCAGAGTGAGGCCA
CTGCGTTCACCGCCCCCGCCTCCACCACCACCACCACCACCACCGCCACC---ACCATATCGCCAACGAGGCGTCCGCCC
TACGCAGTCTCCTGCACTACCACTACCGTGCCACTAGATCTAGGTTTCGACTTAA-------------------------
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TCTTGTATCCATTTTGCTTATGATTTGCGAAGACCTTGATCTGGACATGTTAATCTTGGACGATGCTTCGGTGCCTATGA
CATGTGGATCCAACAGGTGACTGACCCACATGTCAGTGACCCAAAGGCAGGTGCCTTTAAGCCACCGAAGCTGCGTCCGT
TAATCTTTGACGCATCTTTGAAAAAAAAAAGG------------------------------------------------
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----------------------------------------------------------------------TTGTTATCTG
ATTAAAGAAGGTTTGTCATGTATTTAAAAACGTGTTTACATGTTTACAATAAAAGTATTCGTCCCAATTTTGGACTAGCG
TTCTTTAAGTTTAAGATATTTCTAAAAAAGTGTTTACATGTTTACAATA-AAAGTATTCGTCCCAATTTTGGACTAGCGT
TCTTTAAGTTTAAGATATTTCCTTATCAGTTCTGTAAAAAGAGTATAGGGTGGTCATAATACAAGGTTTTTGGAAGATTG
GTGGGTTGATGACAAGGCACCTAAATTGCTTACCCTATATCACATTAACTGAAGCTATTGATAAAGGTGGAGTGGGTTCA
GATTCAGAAGAATTCTATATGGGAAGTTTTCGGATCTGTGGAATAGTTTAAAACAT-AATCTAAAGAGGTTGAAATGGGA
TCTAGTAAAGATAAAATCAGATGGATGTTGACAACTCACAA-TTTTTTGTCAAGTCTCTTTACAGGAAATTAATTGAACA
TCT------ATGTAACTTTCCT-AAAAAAACTCTTTGCAAGGTCGGAGTACCTACTAAGATCAAAGATTTTCTTTGGCTT
ATGGTTAGAAAAAACTATCTCACTAACGATAACCTACTTAGGAGTGGGTGAGCTGGAAACAAAATGGGCATTTTCTATGG
CATGGATGAAACAATAAACCATCTGTTTTTTTAATCCTCTATTGCTAATTTTGTCTGAGAGTTTGCTGAAATGTACTTTT
AGTTTAAATTCTACTCTAACTGCACTGAATGATTGTTTTGGAATCTGGATTGGAAGTTTTCTAAAGAATG
>chr1B_127
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----------------------------------------------GCGGGGCACATGCACATTAACCATTGGTGTGTCC
CTAGGGTGGATACAGATGTTGGCACTGCTCATGCACAGGCACAGCATTCATCACTGGCATTTAGTTTGCTGAATAAATTC
AGCCCACAATGGAATGGGCACCTAAAGTTTGAGAGCATTTCCCTTCGCCAACAATGGCAAGATTCTCTCATGCTTTGCTG
GCTCAGGCTCTCCTGATCCTAGTAGCAACGTTGGTCACTTCGAAGTCCACAGAGGAAGGCCGAGCTCGCTCCTGTTACAC
GCCACCGGTGCCAACTCCGGCGTCTTCTGGCCAACGTGACCAAACCCCAGCAGTATCAATGGGACTTCTTGGTTCGAGAT
CACCACTCGAAGCTCCGCCGCCGCCAGAACCACACCGT---------CGGTACCGGAGGGGGGCTCCACCCGAACAGCCG
CCTCCCCCACCACCACTCTCGCCGCCGCCTCCGCCTCCGTCATCGCCACTCTCGCCGCCGCCGCCACCATTCTCGCCTCC
GCCTCCGCCTCCGTCATCGCCACTCTCGCCGCCA---------------------CTTAATTAGCGGTACTATCACGTGG
GTGTAGCACTTTCACTTCCCCGCATTGCAATATTTCTCAGCATCACCACATTGTATCTGCAGTTTA---CAAGTTTTAAG
C---TAGTTTTCAAAGCAATGTAACAC--TGGATTTTTATCTTGCTTTGCCCAGTGAGAAATTTTCCGAGCCAGTGCGGA
TATCGAAGTATTCTCTCGATTTTT--GTTTGCTCGCCCAAGTGCCCGAGTAGTACTTCAGGGCAGAAAACCTTGACCTTG
GGTTTCTACATGGCCAAACGCTGGATGCGTTGACGCGACGGCTC----ATCTTTCACAGCTGTAAACTCAAGCCATGATT
CCGGGACAAATGCAAGTCAAGTCAACTACTCCAAGTTTTCAGTATAAGTTGGGTTGATGAGCAGGCCATCTCACCGAGAG
CAGCAGTGTTCAGTTTCTTTTTGTTTGGCCAAGATGAGACTGTTCTTCAAGCTCTTCGCCGTCTTGGCCATCATGGCTGC
TCTGTCGGCCACAAATGTGCCGTCGCCGCTTGGTGTATGGGGGAGGACGCCGGGGAGAGCCCCACCTTCGCCGAAGTCGT
CCCCGCGTAGGAGTTCCGCGAGGCCGACTCGTCCCCGGCCACCGCCTCCGCCACCGGCGCAGAAGGGCAGAGTGAGGCCA
CTGCGTTCACCGCCCCCGCCTCCA---------------------CCACC---ACCATATCGCCAACGAGGCGTCCACCC
TACGCAGTCTCCTGCACCGCCGCTACCGTGCCACTAGATC-AGGTTTCGACTTAA-------------------------
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TCTTGTATCCATTTAGC---------------------------------------------------------------
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>chr1D_129
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------------------------------------------------GGGGCACATGCACATTAACCATTGGTGTGTCC
GT----------CAGATGTTGGCACTGCTCATGCACAGGCACAGCATTCATCACGGTCATTTAGTTTGCTGCTTAAATTC
AGCCCACAATGGAATGGGCACCTAAAGTCTGAGAGCATTTCCCTTCGCCAACAATGGCAAGATTCTTCTCATGCTTGCTG
GCTCAGGCTCTCCTGATCCTAGTAGCAACGTTGGTCACTTCGAAGGCCACAGAGGAAGGCCAAGCTCGCTCCTGCTACAC
GCCATCGGTGCCAACTCCGGCGTCTTCTAGCCAACGTGACCATACCCCAGCAGCATCAGTGGGACTTCTTGGTTCGAGAT
CACCGCTCGAAGCTCCGCCGCCGCCAGAACCACACCGT---------CGGTACCGGAGGGGGGCTCCACCCGAACAGCCG
CCTCCACCACCACCACTCTCGCCTCCGCCACT---------------------------------ACCATTCTCGCCTCC
GCCTCCGC------CACCGCCACTCTCGCCGCCGCCAGCCCACGACCACAACAATCTTAATTAGCAGTACTATCACGTGG
GTGTAGCACTTTCACTTCCCCGCATTGCAATATTTCTCAGCATCACCACATTGTATCTGCAGTTTATTACATGTTTTAAG
CTATTAGTTTTCAAAGCAATGTAACACTATGGATTTTTATCTTCCTTTGCCCACTGAGAAATTTTCCGAGCCAGTGCGGA
TATCGAAGTATTCTCTTGATTTTT--GTTTGCCCGCCCAAGTGCCCGAGTA---CTTCAGGGCAGAAAACCTTGACCTTG
GGTTTCTACATGGCCAACCGCTGGATGCGTTGACGCGACGGCTC----ATCTTTCACAGCTGTAAACTCAGGCCATGATT
CCGGGACAAATGCAAGTCGAGTCAACTACTCGAAGTTTTCAGTATAAGTTGGGTTGATGAGCAGGTCGTCTCACCGAGAG
CAGCAGTGTTCAGTTTCATTTTGTTTGGCCAAGATGCGACTGTTCTTCAAGCTCTTCGCCGTCTTGGCCATCATGGCTGC
TCTGTCGGCCGCAAATGTGCCGTCGCCAGTTGGTGTATGGGGAAGATCGCCGGGGAGAGCGCCACCTTCGCCGAAGCCGT
CCCCGCGTAGGAGTTCCGCGAGGCCGACTCGTCCCAGGCCACCGCCTCCGCCACCGGCGCAGAAGGGCAGAGTGAGGCCA
CTGCGTTCACCGCCCCCGCCTCCA---------------------CCACCGCCACCGTATCGCCAACGAGGCGTCCACCC
TACGCAGTCTCCTGCACCGCCGCTACCGTGCCACTAGATCTAGATTTCGACTTAACTAGCAAAAAAAAAGACCCGTGTGT
TGCAACAGGAGTAAAGAACACCATACACTCTTAATTTACAAAAAAGTCTATAATCTGAGTATTTGTAGTTATGACCCAAA
CAAAGATGGTCTTTGCTTACAACAGCGCAAGTTCAAGATTCACATGTCTTCTATTTAAACACGGCTTGCATGTAGATTTA
ATACATACAAAGAAACGAGCAAGTGATCTTCAATTTTATCTCAAACCCTCATTTTGCTGAGATGTTCATCCACAATTCAA
TATGAAAGAAAGACGGATAATGCACTATTGATTGAGATTGCACTCTAGATAGTATTTTTTAAAATGTTTAACAGATAAAA
TAACATCATATTCAGATTCTATATATTTTTCTAATCAAATTCCATATATAACATGTTAAATTTGGAGTTACGGTTTAGAA
GATATGTATTTTCAAAAACATTTGATATGTACCGCGGGTTTAGTGTCAGAAACATTAGGGGTTTCTATAAAATAGCATGA
CGGACTATGAATACCTATTTCTTTTATTAGTAGGTATAGATCTGGGAAAATATCATATGGTACCACCATTCACATGCTAC
CATGCTCCAAGTTTTGAAAAATGGCATTTAAATGTTTCAAAAAAATTCTAAAAAATTTGTGGATGTTCACAAGACATATG
TTATAACCCTTAAAAAATCCAGATCAAAATTCAAAATGTACATCGAGAAACAAAAAAGACAAATCTAGAATGAATTGTGT
CAAAAGAAGACAAAATATGAATAGTGTAAAAAATGACACTATTCACATATGAATTTGTCTTTTTTTTTCTCAATTTACAT
TTCAAATTTTGATCTGATTTTTTTAGGGGTTATAGACATATGTCTTGTGAACATCCATAAAAAAATTCAGAATTTTTTGA
AACATCTAAATATGACTTTTCAAAATTTGTATCATGGGAGCATCTAAAGTGTGGTATCACCTGATATCTACCGGTATAGA
TCTTGTATCCATGCAGCTTATGATTTGCGAAGACCTTGATCTGGATA---------------------------------
-----------------------------------------------------------------------------CGT
TAATCTTTGACGTATCCTTGAAAAAAGACATGATTATTTTTGCCAACAATGTTTCCGTGCAGTGCTTTTGATTTCTCAAA
CGGTCCTTTTTACTACTCCCTCCATTCCATAATATAATGGGTTCATGTTTTTTAAGATTTAACTTTGATCATAAATTTAA
GCAACATGGACGACTGCGGCGGGAGCATGACAGATACCTTTGAATTCGTAAGTCAAATCTCGAAAAACGTGAGCACACTA
CATTATGGAACGAAGTGAGTAATACCTCCGTTCCCAAATATATGGCATATAAATTTGGTCAAAAGGTCAATGCTCTCCAA
CTTTGACCAAGTATATATACAAAATATTAAGATAAATAATATTAAATCAATATCAATATATCCACCCTTACATTCACAAA
AAAAACCACCGTGAACAACTATAATGTTGTGAAAATATAACAACAACTACTATACTCGTCGTTGCTTGAAGCGCCCCCCC
ATAAATGGGATATACCCGGTGCGGGAGGGGGCATGCAGATCTGCCAAACACCTATATGTCTACGCAGGTAAGGATGTACA
TTATGTGTTTTTTCTTTCTTTTTGCTTGTGGTTTTTTCTTCGGTTTCTTTTCAAAATGCTCTAACAAATAGATTGGGAAT
ATGTAGAAGAATGTTCATATCCTTTGAAAAAGGGTTTTTTGCAAATGTTCAGTGTGTGCTTTAAAAGGGTTTGTTGTGTG
ATTAAAGAAGGTTTGTCATGTA----------------------------------------------------------
--------------------TCTAAAAAAGTGTTTACATGTTTACAATA-AAAATATTCATCCCAATTTTGGACTAGCGT
TCTTAAAGTTTAAGATATTTCCGTATTAGTTATATAAAAAGAGTTTACGGTGGTCATAATACAATATTTTTGGAAGATTG
GTGGGTTGATGACAAGCCACCTAAATTTCTTACCCTGTATCACATTAACTGAAGCTATTGATTAAGGTGGAGTGGGTTCA
GATTCAGAAGAACTCTATATGGGGAGTCTCCGGATCTGTCGAATAGTTTAAAACATAAATCTGAAGAGGTTG-AAATGGA
TCTAGTAAAGATAAAATCAAATGGATGTTGACAACTCACAATTTTTTTGTCAAGTCTCTTTACAGAAAACTAATTGAATA
TCTATGTAAATGTAACTTTCCTGAAAAAAAATCTTTGCAAGGTCAAAGTACCTGCTAAGATCAAAGATTTTCTTTGGCTT
ATTGTTAGAAAAAACTATCTTACTAACGATAACCTACTTAGGAGTGGGTGGGCTGGAAACAAAGTGTGCATTTTCTGTGG
CATGGATGAAACAATAAACCATCTGTT-TTTTACTACTCTGTTGCTAATTTAGTCTG-GAGTTTGCTGAAATGTACTTTT
AGTTTAAATTCTACTCTAACCGCACTGAATGATTGATTTGGAATCTGGATTGGAAGTTTTCTAAAGAATG
>chr1B_1642
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--------------------TCTGAAAAAGTGTTTACATGATTACAATAAAAAATATTCATCCCAATTTTGGACTAGCGT
TCTTAAAGTTGAAGATATTTCCTTATCACTTCTGGAAAAAGAGTTTAGAGTGGTCATAACACTAGATTTTTGGAAGATTT
GTGGGTTGATGACAGGCCACCTAAATTGCTTACGCAATATCACATTATCTGAAGCTATTGATAAAGGTGGAGTGGGTTCA
GATTCAGAAGAATTATATATCGGGAGTTTCCGGATCTATGGAATAGTTGAAAACAT-AATCTAAAGAGGTTC-AATGGGA
TCTAGTAAAGATAAAATCAAATTGATGTTGACAACTCACAATTTTTT-GTCAAGTCTTTTAACAAGAAACTAATTGAATA
TCTATGTAACTTTCCT--------AAAAAAATATTTGCAAGGTCAAAGTACCTGCTAAGATTAAAGGTTTTCTTTGGTTT
ATGGTTAGAAAAAAGTATCTCACTAACGATAACCTACTTAGGAGTGGGTGGGCCGGAAAGAAAACGTGCATTTTCTGTGG
CATGGATGAAACAATAAACCATCTGTTTTTTTAATGCTCTGTTGCTAATTTAGTCTG-GAGTTTGCTGAAATGTACTTTT
AGTTTAAATTCTACTCTAGCTACACTGAATGTTAGTTTTGGAATCTGGATTGGAAGTTTTCTAAAGAATG
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------------------------
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-----------------------------------------------------------------S----S-----S---
--------------S-----------------------------------------------------------------
------------------------------------------S-------------------------------------
-------S------------------------------SSSSSSSSS-------S-------------------------
-----S--------------------S-----------------------------------S----S------------
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----------------------------S--------------------S-----------S------------------
------------SS---------------------------------------------------S----------S---
------------------------SS-------S----------------------------------------------
---------------------------------------S----SSSS--------------------------------
--S-S---------------------------------------------S--S--------------------------
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--------------------------S-----------------------------------------------S-----
---------------------SS---------------------------------------------------------
------------------------SSSSSSSSSSSSSSSSSSSSS-------------------------------S---
-----------------SS--S----------------------------------------------------------
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--------------S------------------------------S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---
------------S---S---------S-S-S-------------------------------------------------
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---------------------------------------------------------------------------S-S--
----------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSS---------------------------------S-----S--------------------
----S---------------------------------------S--------------------S--------------
----------------S---------------------------------------------------------------
-----------------------S-----S------------------------------------------S-------
-------------------S-------------------------------------------------S--------S-
------------------------------S-------------SS-------S--------------------------
--------------------------------------------------S---------------S---------S---
-----------------------------------S----S----------S-----S----------------------
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>forward_335
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---------------------------------------------------------------------------TTCTG
GCTCAGGCTCTCCTA-----------------------------------------------------------------
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>reverse_2585
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------------------------CCCACATGTCAGTGACCCAA------------------------------------
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